Wall clock time and date at job start Tue Mar 31 2020 19:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47187 * 2 1 4 4 C 1.52998 * 109.47323 * 175.00137 * 3 2 1 5 5 C 1.52998 * 109.47231 * 185.00046 * 4 3 2 6 6 N 1.46497 * 109.47058 * 295.00193 * 3 2 1 7 7 C 1.46762 * 124.34850 * 120.19340 * 6 3 2 8 8 C 1.54479 * 105.53509 * 163.21275 * 7 6 3 9 9 H 1.09001 * 110.99877 * 143.34173 * 8 7 6 10 10 C 1.50698 * 110.97021 * 267.08919 * 8 7 6 11 11 O 1.21279 * 120.00477 * 353.83695 * 10 8 7 12 12 N 1.34782 * 119.99866 * 173.83317 * 10 8 7 13 13 C 1.46924 * 120.62984 * 359.97438 * 12 10 8 14 14 C 1.53188 * 108.77486 * 233.58487 * 13 12 10 15 15 C 1.53040 * 109.32001 * 305.36783 * 14 13 12 16 16 C 1.53036 * 109.53267 * 61.36501 * 15 14 13 17 17 H 1.09003 * 109.50307 * 58.59181 * 16 15 14 18 18 C 1.50707 * 109.49696 * 178.65300 * 16 15 14 19 19 H 1.07999 * 119.99649 * 119.99711 * 18 16 15 20 20 C 1.37870 * 119.99910 * 300.00305 * 18 16 15 21 21 N 1.31517 * 120.00163 * 359.97438 * 20 18 16 22 22 Si 1.86801 * 120.00141 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.47059 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47335 * 119.99459 * 22 20 18 25 25 H 1.48503 * 109.47100 * 239.99982 * 22 20 18 26 26 C 1.46928 * 120.62809 * 179.72589 * 12 10 8 27 27 C 1.54623 * 101.76448 * 25.20998 * 8 7 6 28 28 C 1.34417 * 124.35094 * 300.02103 * 6 3 2 29 29 O 1.21283 * 124.94355 * 0.43141 * 28 6 3 30 30 H 1.09006 * 109.47337 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47104 * 299.99726 * 1 2 3 32 32 H 1.08992 * 109.47187 * 59.99927 * 1 2 3 33 33 H 1.09002 * 109.47104 * 240.00274 * 2 1 3 34 34 H 1.09006 * 109.47289 * 120.00314 * 2 1 3 35 35 H 1.09004 * 109.47122 * 55.00032 * 3 2 1 36 36 H 1.09000 * 109.46928 * 304.99890 * 4 3 2 37 37 H 1.08998 * 109.47175 * 64.99900 * 4 3 2 38 38 H 1.09005 * 109.46994 * 60.00197 * 5 4 3 39 39 H 1.09002 * 109.47233 * 179.97438 * 5 4 3 40 40 H 1.09004 * 109.47279 * 300.00210 * 5 4 3 41 41 H 1.09004 * 110.38933 * 44.10688 * 7 6 3 42 42 H 1.08994 * 110.04470 * 282.14598 * 7 6 3 43 43 H 1.08998 * 109.58664 * 353.37873 * 13 12 10 44 44 H 1.09006 * 109.58301 * 113.80220 * 13 12 10 45 45 H 1.08998 * 109.49480 * 65.32638 * 14 13 12 46 46 H 1.09008 * 109.49511 * 185.38058 * 14 13 12 47 47 H 1.08997 * 109.46106 * 181.38384 * 15 14 13 48 48 H 1.09003 * 109.45809 * 301.36131 * 15 14 13 49 49 H 0.97000 * 119.99966 * 180.02562 * 21 20 18 50 50 H 1.09001 * 109.58116 * 246.19991 * 26 12 10 51 51 H 1.08999 * 109.58924 * 6.62277 * 26 12 10 52 52 H 1.09000 * 110.48720 * 216.52574 * 27 8 7 53 53 H 1.08997 * 110.48721 * 93.88170 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4443 0.1257 5 6 4.0644 2.8850 0.2511 6 7 1.6524 2.0975 -1.2518 7 6 0.8109 3.2971 -1.3326 8 6 1.0262 3.8585 -2.7556 9 1 0.1010 4.2726 -3.1562 10 6 2.1252 4.8895 -2.7681 11 8 2.6278 5.2528 -1.7258 12 7 2.5498 5.4077 -3.9376 13 6 1.9512 4.9771 -5.2084 14 6 3.0693 4.5177 -6.1494 15 6 4.1047 5.6360 -6.2893 16 6 4.7191 5.9387 -4.9208 17 1 5.1819 5.0360 -4.5220 18 6 5.7620 7.0170 -5.0650 19 1 5.6542 7.9478 -4.5280 20 6 6.8537 6.8152 -5.8826 21 7 6.9852 5.6815 -6.5362 22 14 8.1461 8.1520 -6.0619 23 1 7.7674 9.3216 -5.2289 24 1 9.4628 7.6308 -5.6148 25 1 8.2352 8.5666 -7.4851 26 6 3.6162 6.4181 -3.9654 27 6 1.4478 2.5908 -3.5341 28 6 2.0245 1.6788 -2.4737 29 8 2.7174 0.7081 -2.6943 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6053 1.9815 0.8418 36 1 3.8570 0.8801 1.0113 37 1 4.0029 0.9836 -0.7597 38 1 3.6263 3.3457 1.1365 39 1 5.1507 2.8863 0.3411 40 1 3.7721 3.4494 -0.6345 41 1 1.1211 4.0296 -0.5873 42 1 -0.2357 3.0299 -1.1869 43 1 1.2637 4.1510 -5.0270 44 1 1.4132 5.8107 -5.6598 45 1 3.5476 3.6284 -5.7391 46 1 2.6489 4.2859 -7.1280 47 1 4.8888 5.3209 -6.9777 48 1 3.6206 6.5328 -6.6762 49 1 7.7534 5.5394 -7.1111 50 1 3.2113 7.3670 -4.3173 51 1 4.0275 6.5430 -2.9637 52 1 2.2044 2.8350 -4.2797 53 1 0.5815 2.1272 -4.0060 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597913611.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:15 Heat of formation + Delta-G solvation = -102.311841 kcal Electronic energy + Delta-G solvation = -31834.775077 eV Core-core repulsion = 27897.832296 eV Total energy + Delta-G solvation = -3936.942781 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.20284 -40.60219 -38.43591 -37.59908 -36.63948 -35.36416 -33.12741 -33.02894 -32.43587 -31.32933 -28.67944 -27.59541 -26.95962 -26.31004 -23.76101 -23.28875 -23.01660 -22.90199 -21.36771 -19.95107 -19.63186 -18.71884 -18.15016 -17.77979 -17.09527 -16.72639 -16.63147 -16.10680 -15.84514 -15.60683 -15.32938 -15.08386 -14.84316 -14.72118 -14.67147 -14.25871 -14.19224 -13.91511 -13.79537 -13.76465 -13.58499 -13.43788 -13.23288 -12.91842 -12.84301 -12.60375 -12.56684 -12.50257 -12.47148 -12.02449 -11.98903 -11.86441 -11.81441 -11.78708 -11.75440 -11.59184 -11.25154 -10.85823 -10.62766 -10.57716 -10.43148 -9.58652 -9.44840 -8.12371 -6.28128 1.37233 1.39493 1.50659 1.60604 1.65058 2.06993 2.14814 2.41706 3.14032 3.29092 3.36323 3.50062 3.73717 3.91456 4.01348 4.09216 4.13781 4.25185 4.32343 4.34672 4.38055 4.45969 4.54143 4.56082 4.59080 4.60341 4.63111 4.69617 4.76610 4.82218 4.85791 4.89085 4.90954 4.97163 4.98959 4.99827 5.11897 5.13032 5.16970 5.24276 5.29596 5.35854 5.41472 5.48427 5.58065 5.60182 5.76337 5.92520 6.13774 6.22562 6.33046 6.60428 6.82838 7.22561 7.25225 7.40491 8.91070 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016643 B = 0.003316 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.943686 B = 8440.668116 C = 8899.257352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.136 4.136 3 C 0.160 3.840 4 C -0.136 4.136 5 C -0.145 4.145 6 N -0.602 5.602 7 C 0.116 3.884 8 C -0.111 4.111 9 H 0.174 0.826 10 C 0.505 3.495 11 O -0.578 6.578 12 N -0.605 5.605 13 C 0.104 3.896 14 C -0.130 4.130 15 C -0.105 4.105 16 C 0.042 3.958 17 H -0.024 1.024 18 C -0.536 4.536 19 H 0.053 0.947 20 C 0.015 3.985 21 N -0.914 5.914 22 Si 0.955 3.045 23 H -0.266 1.266 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.133 3.867 27 C -0.153 4.153 28 C 0.505 3.495 29 O -0.577 6.577 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.040 0.960 38 H 0.066 0.934 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.084 0.916 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.089 0.911 45 H 0.036 0.964 46 H 0.091 0.909 47 H 0.057 0.943 48 H 0.041 0.959 49 H 0.260 0.740 50 H 0.065 0.935 51 H 0.050 0.950 52 H 0.094 0.906 53 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.011 -7.518 9.229 24.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.174 4.174 3 C 0.058 3.942 4 C -0.174 4.174 5 C -0.203 4.203 6 N -0.334 5.334 7 C -0.007 4.007 8 C -0.132 4.132 9 H 0.191 0.809 10 C 0.294 3.706 11 O -0.459 6.459 12 N -0.336 5.336 13 C -0.018 4.018 14 C -0.168 4.168 15 C -0.144 4.144 16 C 0.023 3.977 17 H -0.005 1.005 18 C -0.574 4.574 19 H 0.071 0.929 20 C -0.184 4.184 21 N -0.553 5.553 22 Si 0.780 3.220 23 H -0.191 1.191 24 H -0.212 1.212 25 H -0.201 1.201 26 C 0.010 3.990 27 C -0.193 4.193 28 C 0.294 3.706 29 O -0.457 6.457 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.129 0.871 36 H 0.108 0.892 37 H 0.059 0.941 38 H 0.085 0.915 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.102 0.898 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.107 0.893 45 H 0.054 0.946 46 H 0.109 0.891 47 H 0.076 0.924 48 H 0.060 0.940 49 H 0.069 0.931 50 H 0.083 0.917 51 H 0.069 0.931 52 H 0.112 0.888 53 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -20.271 -7.928 9.622 23.798 hybrid contribution 2.018 0.703 -0.415 2.177 sum -18.252 -7.225 9.207 21.682 Atomic orbital electron populations 1.21669 0.93783 1.02004 1.02296 1.21882 0.97764 0.95216 1.02548 1.21177 0.93602 0.93954 0.85504 1.21902 0.96333 0.97075 1.02119 1.21683 0.99997 0.96676 1.01905 1.48379 1.50389 1.28951 1.05725 1.22262 0.96469 0.85972 0.95966 1.22413 0.99531 0.93043 0.98185 0.80870 1.21081 0.84283 0.82385 0.82823 1.90643 1.59367 1.62968 1.32873 1.48295 1.36995 1.41122 1.07217 1.22168 0.95269 1.01740 0.82598 1.21937 0.96824 0.97886 1.00203 1.21407 0.97169 0.96588 0.99191 1.18924 0.91857 0.94140 0.92775 1.00545 1.21486 1.07021 1.01949 1.26991 0.92858 1.25718 0.99827 0.97597 0.95300 1.70035 1.29995 1.25375 1.29934 0.85557 0.78761 0.79560 0.78090 1.19068 1.21152 1.20059 1.21566 0.87742 0.90227 0.99435 1.22708 1.05019 0.94139 0.97424 1.21280 0.79126 0.84558 0.85621 1.90668 1.40041 1.30394 1.84642 0.92467 0.91169 0.92975 0.93410 0.89758 0.87109 0.89209 0.94118 0.91455 0.94299 0.94300 0.89763 0.85907 0.86115 0.89294 0.94564 0.89087 0.92404 0.94008 0.93053 0.91694 0.93129 0.88821 0.82452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.80 71.98 0.71 -1.21 16 2 C -0.14 -2.56 5.36 30.59 0.16 -2.39 16 3 C 0.16 3.34 2.25 44.99 0.10 3.45 16 4 C -0.14 -3.59 5.36 30.59 0.16 -3.42 16 5 C -0.15 -4.37 9.80 71.98 0.71 -3.67 16 6 N -0.60 -13.53 1.74 -794.05 -1.38 -14.91 16 7 C 0.12 1.93 6.68 86.83 0.58 2.51 16 8 C -0.11 -1.98 2.60 -10.49 -0.03 -2.01 16 9 H 0.17 1.38 8.05 -2.39 -0.02 1.36 16 10 C 0.51 15.50 7.10 87.66 0.62 16.12 16 11 O -0.58 -22.30 13.59 -3.03 -0.04 -22.34 16 12 N -0.61 -20.01 2.94 -818.13 -2.41 -22.41 16 13 C 0.10 2.59 5.41 86.36 0.47 3.05 16 14 C -0.13 -4.32 5.90 30.67 0.18 -4.14 16 15 C -0.11 -4.72 4.96 30.62 0.15 -4.57 16 16 C 0.04 2.15 2.26 -11.33 -0.03 2.12 16 17 H -0.02 -1.43 8.14 -2.39 -0.02 -1.45 16 18 C -0.54 -30.01 8.57 25.60 0.22 -29.79 16 19 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 20 C 0.01 0.82 5.30 84.65 0.45 1.26 16 21 N -0.91 -53.63 11.31 21.44 0.24 -53.39 16 22 Si 0.95 44.33 29.54 68.60 2.03 46.36 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 26 C 0.13 5.68 5.68 86.50 0.49 6.17 16 27 C -0.15 -3.10 4.99 30.59 0.15 -2.94 16 28 C 0.51 14.29 7.37 87.90 0.65 14.94 16 29 O -0.58 -21.60 15.02 -3.04 -0.05 -21.65 16 30 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.05 0.73 7.75 -2.39 -0.02 0.71 16 33 H 0.05 1.23 6.62 -2.39 -0.02 1.21 16 34 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.11 1.79 8.07 -2.38 -0.02 1.77 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.04 1.38 6.65 -2.39 -0.02 1.36 16 38 H 0.07 1.72 8.14 -2.38 -0.02 1.71 16 39 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.04 1.43 6.38 -2.39 -0.02 1.41 16 41 H 0.08 1.72 6.94 -2.38 -0.02 1.70 16 42 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.12 1.98 4.54 -2.39 -0.01 1.97 16 44 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 45 H 0.04 1.36 7.41 -2.39 -0.02 1.34 16 46 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 47 H 0.06 3.04 6.04 -2.39 -0.01 3.02 16 48 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 49 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 50 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 51 H 0.05 2.41 7.00 -2.39 -0.02 2.39 16 52 H 0.09 2.40 5.12 -2.39 -0.01 2.39 16 53 H 0.16 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -78.52 397.33 5.03 -73.49 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.88 Total: 19.37 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 5.75 Total: -4.52 kcal Atomic # 7 Polarization: -87.17 SS G_CDS: -3.54 Total: -90.71 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -0.09 Total: -43.99 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -78.52 5.03 -73.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597913611.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.819 kcal (2) G-P(sol) polarization free energy of solvation -78.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds