Wall clock time and date at job start Tue Mar 31 2020 19:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47186 * 2 1 4 4 C 1.52994 * 109.46771 * 119.99990 * 2 1 3 5 5 C 1.53000 * 109.46934 * 174.84385 * 4 2 1 6 6 H 1.09006 * 109.52368 * 51.93438 * 5 4 2 7 7 C 1.53252 * 109.52476 * 172.05753 * 5 4 2 8 8 C 1.53237 * 108.56976 * 175.58389 * 7 5 4 9 9 C 1.50591 * 109.16010 * 304.38901 * 8 7 5 10 10 O 1.21229 * 119.35394 * 209.09265 * 9 8 7 11 11 N 1.34137 * 121.28211 * 29.11428 * 9 8 7 12 12 C 1.46502 * 118.70511 * 179.43026 * 11 9 8 13 13 N 1.46905 * 109.46858 * 90.00346 * 12 11 9 14 14 C 1.46843 * 110.99943 * 205.00221 * 13 12 11 15 15 C 1.53042 * 109.52424 * 185.84109 * 14 13 12 16 16 C 1.53124 * 109.27326 * 300.81876 * 15 14 13 17 17 C 1.50701 * 109.51990 * 177.55908 * 16 15 14 18 18 H 1.07999 * 120.00412 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99842 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99876 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99921 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46728 * 90.00206 * 21 19 17 23 23 H 1.48503 * 109.47215 * 209.99830 * 21 19 17 24 24 H 1.48495 * 109.47447 * 330.00275 * 21 19 17 25 25 C 1.53112 * 109.16339 * 57.65284 * 16 15 14 26 26 C 1.46849 * 110.99695 * 329.20759 * 13 12 11 27 27 C 1.34146 * 122.58974 * 359.71225 * 11 9 8 28 28 O 1.21219 * 119.36147 * 180.26901 * 27 11 9 29 29 H 1.08995 * 109.47148 * 300.00205 * 1 2 3 30 30 H 1.09006 * 109.47038 * 60.00242 * 1 2 3 31 31 H 1.09001 * 109.47370 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47148 * 239.99795 * 2 1 3 33 33 H 1.08998 * 109.46952 * 300.00110 * 3 2 1 34 34 H 1.08995 * 109.47244 * 59.99854 * 3 2 1 35 35 H 1.08997 * 109.46985 * 179.97438 * 3 2 1 36 36 H 1.09000 * 109.47449 * 54.84593 * 4 2 1 37 37 H 1.08996 * 109.47523 * 294.84117 * 4 2 1 38 38 H 1.08998 * 109.61942 * 55.86013 * 7 5 4 39 39 H 1.08996 * 109.77015 * 295.40242 * 7 5 4 40 40 H 1.08996 * 109.52496 * 184.48337 * 8 7 5 41 41 H 1.08999 * 109.52260 * 64.29076 * 8 7 5 42 42 H 1.08997 * 109.47306 * 330.00247 * 12 11 9 43 43 H 1.09000 * 109.47471 * 209.99883 * 12 11 9 44 44 H 1.08991 * 109.46722 * 65.82108 * 14 13 12 45 45 H 1.09002 * 109.45404 * 305.84653 * 14 13 12 46 46 H 1.08991 * 109.50319 * 180.88088 * 15 14 13 47 47 H 1.08998 * 109.50528 * 60.75708 * 15 14 13 48 48 H 1.09007 * 109.51932 * 297.74647 * 16 15 14 49 49 H 0.96997 * 119.99638 * 180.02562 * 20 19 17 50 50 H 1.08999 * 109.50571 * 62.28596 * 25 16 15 51 51 H 1.08998 * 109.50741 * 182.40634 * 25 16 15 52 52 H 1.08998 * 109.46699 * 294.17278 * 26 13 12 53 53 H 1.08995 * 109.46283 * 54.16175 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5644 -0.8345 1.1861 6 1 3.9952 0.1485 0.9951 7 6 4.0935 -1.3751 2.5190 8 6 5.6064 -1.5844 2.3947 9 6 5.8858 -2.4877 1.2226 10 8 6.8702 -3.1950 1.2389 11 7 5.0668 -2.5247 0.1610 12 6 5.3995 -3.4152 -0.9538 13 7 4.7840 -4.7302 -0.7304 14 6 5.5222 -5.7838 -1.4384 15 6 4.7735 -7.1118 -1.3038 16 6 4.6369 -7.4669 0.1794 17 6 3.8482 -8.7432 0.3210 18 1 3.4809 -9.2515 -0.5583 19 6 3.5963 -9.2626 1.5731 20 7 2.9085 -10.3767 1.6967 21 14 4.2334 -8.3847 3.0939 22 1 3.2163 -7.4109 3.5658 23 1 4.5007 -9.3790 4.1641 24 1 5.4896 -7.6661 2.7609 25 6 3.9074 -6.3316 0.9029 26 6 4.6813 -5.0263 0.7042 27 6 3.9580 -1.7743 0.0773 28 8 3.2567 -1.8578 -0.9079 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.1300 1.4424 0.0005 36 1 1.6032 -1.7188 1.2966 37 1 1.7540 -0.1569 2.1368 38 1 3.6100 -2.3252 2.7463 39 1 3.8870 -0.6597 3.3150 40 1 5.9868 -2.0434 3.3071 41 1 6.0955 -0.6229 2.2382 42 1 6.4818 -3.5269 -1.0190 43 1 5.0214 -2.9903 -1.8836 44 1 6.5179 -5.8829 -1.0062 45 1 5.6085 -5.5209 -2.4927 46 1 5.3297 -7.8967 -1.8162 47 1 3.7827 -7.0176 -1.7482 48 1 5.6273 -7.5994 0.6149 49 1 2.7310 -10.7419 2.5776 50 1 2.9030 -6.2251 0.4933 51 1 3.8448 -6.5592 1.9670 52 1 5.6809 -5.1290 1.1265 53 1 4.1567 -4.2134 1.2062 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781571707.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:40 Heat of formation + Delta-G solvation = -90.555367 kcal Electronic energy + Delta-G solvation = -31867.947566 eV Core-core repulsion = 27931.514583 eV Total energy + Delta-G solvation = -3936.432982 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.06621 -40.31758 -39.71071 -37.75247 -36.62839 -35.88628 -34.66318 -33.21169 -31.85350 -30.78014 -28.79846 -27.94798 -26.35201 -26.25044 -24.51374 -24.06642 -23.52184 -22.62609 -20.95528 -20.59358 -19.51674 -18.88791 -18.37997 -18.25241 -17.83663 -17.06875 -16.49267 -16.05120 -15.80197 -15.66813 -15.57166 -15.42488 -15.16800 -14.93668 -14.87528 -14.70339 -14.64909 -14.03419 -13.77995 -13.65214 -13.52975 -13.49548 -13.26992 -13.13474 -12.95803 -12.84377 -12.69126 -12.44964 -12.26718 -12.19081 -12.10256 -11.79046 -11.77818 -11.53529 -11.41105 -11.30881 -11.20659 -11.17514 -11.02234 -10.89200 -10.67616 -10.55193 -9.35201 -8.33999 -6.36878 0.52682 1.21920 1.28930 1.39445 1.41485 1.75729 2.27196 2.83155 2.97779 3.00388 3.49506 3.61099 3.67548 3.85585 3.93592 4.00445 4.09889 4.15589 4.19383 4.20925 4.23334 4.27613 4.36484 4.40582 4.43779 4.48725 4.54330 4.63009 4.65344 4.77143 4.79741 4.83375 4.85703 4.89805 4.96625 4.99907 5.04604 5.06917 5.12051 5.12339 5.19564 5.20149 5.41287 5.43154 5.56370 5.58828 5.68309 5.70421 5.88107 5.95853 6.01507 6.28078 6.48580 6.69246 6.77570 7.28033 8.83213 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012930 B = 0.003716 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.989684 B = 7532.916965 C = 7795.142598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C -0.142 4.142 4 C -0.093 4.093 5 C -0.102 4.102 6 H 0.146 0.854 7 C -0.117 4.117 8 C -0.134 4.134 9 C 0.512 3.488 10 O -0.539 6.539 11 N -0.573 5.573 12 C 0.265 3.735 13 N -0.547 5.547 14 C 0.068 3.932 15 C -0.090 4.090 16 C 0.013 3.987 17 C -0.517 4.517 18 H 0.035 0.965 19 C 0.013 3.987 20 N -0.948 5.948 21 Si 0.947 3.053 22 H -0.263 1.263 23 H -0.293 1.293 24 H -0.258 1.258 25 C -0.108 4.108 26 C 0.068 3.932 27 C 0.520 3.480 28 O -0.508 6.508 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.047 0.953 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.045 0.955 37 H 0.105 0.895 38 H 0.062 0.938 39 H 0.139 0.861 40 H 0.123 0.877 41 H 0.147 0.853 42 H 0.067 0.933 43 H 0.112 0.888 44 H 0.031 0.969 45 H 0.097 0.903 46 H 0.063 0.937 47 H 0.052 0.948 48 H 0.013 0.987 49 H 0.266 0.734 50 H 0.053 0.947 51 H 0.038 0.962 52 H 0.027 0.973 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.058 30.898 2.504 31.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.137 4.137 3 C -0.199 4.199 4 C -0.131 4.131 5 C -0.123 4.123 6 H 0.164 0.836 7 C -0.155 4.155 8 C -0.172 4.172 9 C 0.304 3.696 10 O -0.414 6.414 11 N -0.317 5.317 12 C 0.054 3.946 13 N -0.275 5.275 14 C -0.060 4.060 15 C -0.128 4.128 16 C -0.006 4.006 17 C -0.555 4.555 18 H 0.053 0.947 19 C -0.184 4.184 20 N -0.589 5.589 21 Si 0.774 3.226 22 H -0.189 1.189 23 H -0.220 1.220 24 H -0.183 1.183 25 C -0.146 4.146 26 C -0.060 4.060 27 C 0.312 3.688 28 O -0.380 6.380 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.124 0.876 38 H 0.081 0.919 39 H 0.157 0.843 40 H 0.141 0.859 41 H 0.165 0.835 42 H 0.085 0.915 43 H 0.129 0.871 44 H 0.049 0.951 45 H 0.116 0.884 46 H 0.082 0.918 47 H 0.071 0.929 48 H 0.031 0.969 49 H 0.075 0.925 50 H 0.071 0.929 51 H 0.056 0.944 52 H 0.045 0.955 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.653 30.401 1.914 30.577 hybrid contribution 0.735 -0.993 0.587 1.367 sum 3.387 29.409 2.502 29.709 Atomic orbital electron populations 1.21789 0.95502 1.00867 1.01976 1.21449 0.95754 0.97182 0.99355 1.21844 1.01029 0.94883 1.02130 1.21528 0.90916 1.00931 0.99735 1.21756 0.99340 0.99321 0.91855 0.83639 1.21901 0.92509 1.03807 0.97254 1.22102 0.99396 1.01100 0.94648 1.22104 0.80968 0.82465 0.84022 1.90759 1.28578 1.41993 1.80101 1.46975 1.25186 1.39479 1.20020 1.22308 0.97920 0.84155 0.90185 1.62302 1.52443 1.02190 1.10552 1.22094 0.94159 0.90619 0.99102 1.21378 0.99896 0.95102 0.96429 1.19128 0.94561 0.92393 0.94473 1.21357 1.33639 1.07493 0.92974 0.94661 1.25847 0.94857 0.95409 1.02249 1.70043 1.41912 1.22231 1.24676 0.85856 0.79949 0.77863 0.78887 1.18904 1.22027 1.18262 1.21833 0.99732 0.94604 0.98459 1.22005 0.98231 0.97055 0.88686 1.21805 0.78064 0.79541 0.89419 1.90655 1.49161 1.64570 1.33620 0.91580 0.92972 0.94393 0.90704 0.93350 0.91284 0.92209 0.93622 0.87644 0.91930 0.84327 0.85883 0.83532 0.91530 0.87059 0.95087 0.88443 0.91818 0.92873 0.96883 0.92482 0.92853 0.94389 0.95456 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.19 71.98 0.66 -1.65 16 2 C -0.12 -1.90 2.76 -10.79 -0.03 -1.93 16 3 C -0.14 -1.54 8.96 71.98 0.65 -0.89 16 4 C -0.09 -1.26 3.98 30.59 0.12 -1.14 16 5 C -0.10 -1.23 2.32 -11.49 -0.03 -1.25 16 6 H 0.15 0.91 6.24 -2.38 -0.01 0.89 16 7 C -0.12 -1.02 5.37 30.76 0.17 -0.85 16 8 C -0.13 -1.42 6.07 29.89 0.18 -1.24 16 9 C 0.51 11.58 5.76 87.72 0.51 12.08 16 10 O -0.54 -16.67 14.84 -2.87 -0.04 -16.72 16 11 N -0.57 -13.97 1.56 -768.12 -1.20 -15.16 16 12 C 0.27 7.59 5.51 170.80 0.94 8.53 16 13 N -0.55 -19.19 4.91 -908.71 -4.46 -23.65 16 14 C 0.07 2.35 5.29 86.33 0.46 2.81 16 15 C -0.09 -3.81 5.32 30.65 0.16 -3.64 16 16 C 0.01 0.67 1.75 -11.46 -0.02 0.65 16 17 C -0.52 -30.92 9.14 25.60 0.23 -30.69 16 18 H 0.04 2.31 7.99 -2.91 -0.02 2.29 16 19 C 0.01 0.81 5.45 84.65 0.46 1.27 16 20 N -0.95 -61.05 13.96 21.45 0.30 -60.75 16 21 Si 0.95 47.10 24.37 68.60 1.67 48.78 16 22 H -0.26 -12.30 6.89 99.48 0.69 -11.62 16 23 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 24 H -0.26 -12.38 6.53 99.48 0.65 -11.73 16 25 C -0.11 -4.97 4.84 30.65 0.15 -4.83 16 26 C 0.07 2.61 4.16 86.33 0.36 2.97 16 27 C 0.52 11.44 6.89 87.72 0.60 12.05 16 28 O -0.51 -14.51 13.03 -2.84 -0.04 -14.55 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 1.71 5.26 -2.39 -0.01 1.70 16 33 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.06 0.53 6.41 -2.39 -0.02 0.52 16 36 H 0.04 0.86 8.13 -2.39 -0.02 0.84 16 37 H 0.11 0.81 8.13 -2.39 -0.02 0.79 16 38 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.14 0.15 8.14 -2.39 -0.02 0.13 16 40 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.15 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.07 1.90 7.01 -2.39 -0.02 1.89 16 43 H 0.11 3.05 7.29 -2.39 -0.02 3.03 16 44 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.10 2.79 8.12 -2.39 -0.02 2.77 16 46 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 47 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 48 H 0.01 0.67 7.19 -2.38 -0.02 0.66 16 49 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 50 H 0.05 2.56 8.14 -2.39 -0.02 2.54 16 51 H 0.04 1.79 3.39 -2.39 -0.01 1.78 16 52 H 0.03 1.12 6.62 -2.39 -0.02 1.10 16 53 H 0.07 2.28 6.11 -2.39 -0.01 2.27 16 Total: -1.00 -79.05 388.00 2.61 -76.44 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.80 Total: 13.38 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: 5.57 Total: -7.75 kcal Atomic # 7 Polarization: -94.21 SS G_CDS: -5.36 Total: -99.57 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -0.08 Total: -31.27 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.67 Total: 48.78 kcal Total: -79.05 2.61 -76.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781571707.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.117 kcal (2) G-P(sol) polarization free energy of solvation -79.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds