Wall clock time and date at job start Tue Mar 31 2020 21:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47356 * 2 1 4 4 C 1.53004 * 109.46798 * 120.00069 * 2 1 3 5 5 H 1.09004 * 112.81453 * 65.57547 * 4 2 1 6 6 N 1.45816 * 113.50422 * 294.67371 * 4 2 1 7 7 C 1.46503 * 133.17610 * 65.28086 * 6 4 2 8 8 N 1.46901 * 109.47042 * 73.14644 * 7 6 4 9 9 C 1.46899 * 111.00123 * 202.50258 * 8 7 6 10 10 C 1.50699 * 109.47717 * 169.99602 * 9 8 7 11 11 H 1.08006 * 119.99353 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00599 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99744 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00149 * 180.27457 * 12 10 9 15 15 H 1.48502 * 109.46890 * 179.72683 * 14 12 10 16 16 H 1.48499 * 109.47299 * 299.72734 * 14 12 10 17 17 H 1.48497 * 109.46808 * 59.73035 * 14 12 10 18 18 C 1.46902 * 111.00499 * 78.54645 * 8 7 6 19 19 C 1.53001 * 109.47013 * 278.81068 * 18 8 7 20 20 C 1.53000 * 117.49769 * 241.95351 * 19 18 8 21 21 C 1.52997 * 117.49951 * 173.28941 * 19 18 8 22 22 C 1.33962 * 93.64998 * 245.02382 * 6 4 2 23 23 O 1.21288 * 133.35145 * 180.27743 * 22 6 4 24 24 C 1.49509 * 93.30717 * 0.25593 * 22 6 4 25 25 C 1.53970 * 115.23136 * 244.40258 * 24 22 6 26 26 C 1.55407 * 102.09306 * 207.21149 * 25 24 22 27 27 C 1.54983 * 100.99515 * 33.77640 * 26 25 24 28 28 O 1.42750 * 116.04515 * 116.59547 * 24 22 6 29 29 H 1.08995 * 109.47629 * 186.73631 * 1 2 3 30 30 H 1.09001 * 109.46747 * 306.73639 * 1 2 3 31 31 H 1.09000 * 109.46944 * 66.73177 * 1 2 3 32 32 H 1.08999 * 109.46886 * 239.99538 * 2 1 3 33 33 H 1.09007 * 109.47274 * 193.64410 * 3 2 1 34 34 H 1.09000 * 109.47551 * 313.64735 * 3 2 1 35 35 H 1.08996 * 109.47266 * 73.64757 * 3 2 1 36 36 H 1.08992 * 109.47287 * 313.14430 * 7 6 4 37 37 H 1.08998 * 109.47498 * 193.13917 * 7 6 4 38 38 H 1.09001 * 109.46975 * 49.99590 * 9 8 7 39 39 H 1.09001 * 109.46942 * 289.99984 * 9 8 7 40 40 H 0.96993 * 119.99885 * 179.97438 * 13 12 10 41 41 H 1.08996 * 109.46897 * 38.80654 * 18 8 7 42 42 H 1.08998 * 109.47249 * 158.80985 * 18 8 7 43 43 H 1.09009 * 115.54911 * 27.61866 * 19 18 8 44 44 H 1.08997 * 117.50121 * 359.97438 * 20 19 18 45 45 H 1.08995 * 117.49799 * 145.02468 * 20 19 18 46 46 H 1.09000 * 117.50078 * 214.97651 * 21 19 18 47 47 H 1.08999 * 117.49844 * 359.97438 * 21 19 18 48 48 H 1.08997 * 110.90812 * 325.41091 * 25 24 22 49 49 H 1.09003 * 110.90472 * 89.00885 * 25 24 22 50 50 H 1.09002 * 111.11330 * 275.84735 * 26 25 24 51 51 H 1.08999 * 111.15296 * 151.72651 * 26 25 24 52 52 H 1.09001 * 110.30208 * 204.88340 * 27 26 25 53 53 H 1.09001 * 110.30244 * 82.73217 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.7891 -1.7821 1.2569 6 7 1.7075 -0.0362 2.4928 7 6 0.4408 0.2580 3.1675 8 7 -0.1007 -0.9761 3.7522 9 6 -1.5514 -0.8693 3.9568 10 6 -2.1082 -2.2212 4.3220 11 1 -1.4500 -3.0744 4.3953 12 6 -3.4576 -2.3688 4.5637 13 7 -4.2589 -1.3297 4.4750 14 14 -4.1464 -4.0430 5.0239 15 1 -5.6121 -3.9337 5.2365 16 1 -3.8758 -5.0079 3.9281 17 1 -3.4991 -4.5182 6.2731 18 6 0.5850 -1.3088 5.0081 19 6 1.9089 -2.0095 4.6962 20 6 2.0848 -3.4436 5.1994 21 6 2.8487 -2.2981 5.8684 22 6 2.9874 0.2200 2.7939 23 8 3.5280 0.7800 3.7241 24 6 3.5014 -0.4423 1.5559 25 6 4.3650 -1.6949 1.7919 26 6 5.2737 -1.7062 0.5313 27 6 5.4515 -0.1870 0.2814 28 8 4.1875 0.4024 0.6320 29 1 -0.3634 -1.0205 0.1205 30 1 -0.3633 0.6147 0.8236 31 1 -0.3633 0.4060 -0.9441 32 1 1.8933 -0.5139 -0.8899 33 1 3.1028 1.4521 -0.2424 34 1 1.4925 2.0215 -0.7436 35 1 1.8884 1.8814 0.9860 36 1 -0.2702 0.6607 2.4462 37 1 0.6110 0.9897 3.9572 38 1 -2.0229 -0.5181 3.0389 39 1 -1.7538 -0.1634 4.7623 40 1 -5.2083 -1.4336 4.6447 41 1 0.7810 -0.3945 5.5682 42 1 -0.0454 -1.9707 5.6019 43 1 2.3625 -1.7528 3.7387 44 1 1.2576 -3.8878 5.7530 45 1 2.6545 -4.1303 4.5734 46 1 3.9206 -2.2318 5.6822 47 1 2.5241 -1.9884 6.8618 48 1 4.9600 -1.5919 2.6994 49 1 3.7465 -2.5915 1.8338 50 1 4.7729 -2.1864 -0.3094 51 1 6.2306 -2.1844 0.7404 52 1 5.6776 -0.0003 -0.7684 53 1 6.2433 0.2105 0.9162 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839989399.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:13 Heat of formation + Delta-G solvation = -13.456419 kcal Electronic energy + Delta-G solvation = -32404.046077 eV Core-core repulsion = 28470.956356 eV Total energy + Delta-G solvation = -3933.089721 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.12063 -39.63634 -38.81556 -38.05348 -36.93677 -35.00102 -34.56023 -33.15777 -31.30154 -29.27344 -28.25389 -27.87993 -26.54241 -25.66434 -23.66185 -23.23730 -22.83400 -22.42947 -21.41807 -21.32470 -19.56465 -18.59486 -18.48741 -17.63916 -17.33370 -17.12368 -16.69696 -16.53099 -16.40378 -15.75754 -15.37112 -15.29270 -14.98246 -14.72036 -14.54973 -14.39910 -14.21503 -13.90356 -13.79631 -13.45653 -13.33992 -13.12137 -13.09200 -12.87495 -12.79072 -12.71632 -12.60949 -12.39996 -12.36329 -12.09435 -12.04257 -11.96428 -11.75595 -11.51419 -11.47833 -11.38733 -11.15282 -11.12288 -10.79467 -10.61045 -10.24177 -9.85003 -9.19136 -8.19725 -6.28847 1.27280 1.42377 1.44205 1.52021 1.84989 2.41058 2.74109 2.84873 2.89714 3.13588 3.22440 3.32692 3.52733 3.82906 3.90933 3.99589 4.04031 4.06071 4.12119 4.13924 4.19634 4.23839 4.40722 4.40978 4.55155 4.61882 4.65242 4.72120 4.73996 4.77951 4.80474 4.85394 4.86466 4.93745 5.01328 5.03921 5.08406 5.10984 5.13353 5.19481 5.25455 5.26117 5.29460 5.36929 5.45681 5.57613 5.62386 5.69258 5.73618 5.93213 6.01356 6.25363 6.48785 6.84931 7.14089 7.40326 8.90915 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013670 B = 0.004075 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.779289 B = 6869.803648 C = 7824.737403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.078 4.078 3 C -0.149 4.149 4 C 0.134 3.866 5 H 0.110 0.890 6 N -0.590 5.590 7 C 0.294 3.706 8 N -0.535 5.535 9 C 0.215 3.785 10 C -0.515 4.515 11 H 0.064 0.936 12 C 0.007 3.993 13 N -0.933 5.933 14 Si 0.964 3.036 15 H -0.286 1.286 16 H -0.266 1.266 17 H -0.271 1.271 18 C 0.097 3.903 19 C -0.153 4.153 20 C -0.163 4.163 21 C -0.177 4.177 22 C 0.509 3.491 23 O -0.555 6.555 24 C 0.073 3.927 25 C -0.131 4.131 26 C -0.136 4.136 27 C 0.027 3.973 28 O -0.340 6.340 29 H 0.051 0.949 30 H 0.036 0.964 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.019 0.981 36 H 0.095 0.905 37 H 0.035 0.965 38 H 0.016 0.984 39 H -0.038 1.038 40 H 0.264 0.736 41 H 0.009 0.991 42 H 0.066 0.934 43 H 0.106 0.894 44 H 0.084 0.916 45 H 0.111 0.889 46 H 0.102 0.898 47 H 0.085 0.915 48 H 0.078 0.922 49 H 0.103 0.897 50 H 0.099 0.901 51 H 0.107 0.893 52 H 0.116 0.884 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.344 -2.424 -11.784 22.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.097 4.097 3 C -0.205 4.205 4 C 0.031 3.969 5 H 0.128 0.872 6 N -0.325 5.325 7 C 0.083 3.917 8 N -0.261 5.261 9 C 0.089 3.911 10 C -0.554 4.554 11 H 0.082 0.918 12 C -0.191 4.191 13 N -0.573 5.573 14 Si 0.789 3.211 15 H -0.211 1.211 16 H -0.191 1.191 17 H -0.196 1.196 18 C -0.031 4.031 19 C -0.172 4.172 20 C -0.200 4.200 21 C -0.215 4.215 22 C 0.295 3.705 23 O -0.432 6.432 24 C 0.029 3.971 25 C -0.169 4.169 26 C -0.173 4.173 27 C -0.048 4.048 28 O -0.258 6.258 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.127 0.873 33 H 0.114 0.886 34 H 0.075 0.925 35 H 0.039 0.961 36 H 0.112 0.888 37 H 0.053 0.947 38 H 0.034 0.966 39 H -0.021 1.021 40 H 0.073 0.927 41 H 0.027 0.973 42 H 0.085 0.915 43 H 0.124 0.876 44 H 0.103 0.897 45 H 0.129 0.871 46 H 0.120 0.880 47 H 0.103 0.897 48 H 0.097 0.903 49 H 0.121 0.879 50 H 0.118 0.882 51 H 0.125 0.875 52 H 0.133 0.867 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 19.248 -2.183 -11.586 22.572 hybrid contribution -1.303 0.382 1.588 2.089 sum 17.945 -1.801 -9.998 20.621 Atomic orbital electron populations 1.21906 0.95321 1.01680 1.01521 1.21139 0.95246 0.96861 0.96461 1.22119 1.03308 0.95083 1.00003 1.22619 0.90863 0.98318 0.85136 0.87213 1.50007 1.04933 1.55129 1.22479 1.21857 0.84514 0.90178 0.95154 1.61753 1.05299 1.32675 1.26383 1.19332 0.81635 0.96024 0.94075 1.21305 0.92856 0.94996 1.46222 0.91803 1.25805 0.97334 1.00550 0.95428 1.70065 1.04783 1.31757 1.50692 0.85512 0.76893 0.79659 0.79025 1.21123 1.19095 1.19627 1.21556 0.93666 0.97402 0.90451 1.22378 0.96408 0.99388 0.98994 1.23011 1.02532 0.90974 1.03478 1.22950 0.97929 1.03668 0.96922 1.22489 0.82845 0.78104 0.87095 1.90652 1.69581 1.45533 1.37478 1.23191 0.94144 0.92178 0.87626 1.22925 0.98037 0.95107 1.00819 1.23263 1.01126 0.96150 0.96793 1.23877 0.85431 0.93084 1.02449 1.88594 1.32073 1.45377 1.59710 0.92987 0.94525 0.91276 0.87330 0.88586 0.92487 0.96128 0.88768 0.94714 0.96622 1.02068 0.92729 0.97300 0.91550 0.87630 0.89739 0.87090 0.88004 0.89671 0.90304 0.87858 0.88204 0.87475 0.86651 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 8.81 71.98 0.63 -3.10 16 2 C -0.08 -1.71 2.94 -10.79 -0.03 -1.74 16 3 C -0.15 -3.48 8.13 71.98 0.59 -2.90 16 4 C 0.13 3.33 3.67 41.59 0.15 3.48 16 5 H 0.11 2.64 7.69 -2.38 -0.02 2.62 16 6 N -0.59 -19.01 1.29 -869.26 -1.12 -20.13 16 7 C 0.29 11.21 6.16 170.80 1.05 12.26 16 8 N -0.54 -22.82 4.53 -913.17 -4.13 -26.95 16 9 C 0.22 11.11 4.68 85.56 0.40 11.51 16 10 C -0.52 -28.13 8.17 25.60 0.21 -27.92 16 11 H 0.06 3.43 7.40 -2.91 -0.02 3.41 16 12 C 0.01 0.40 5.46 84.65 0.46 0.86 16 13 N -0.93 -54.83 13.29 21.45 0.28 -54.54 16 14 Si 0.96 43.31 29.54 68.60 2.03 45.33 16 15 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 16 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 18 C 0.10 4.03 5.10 86.30 0.44 4.47 16 19 C -0.15 -5.21 5.47 -10.79 -0.06 -5.26 16 20 C -0.16 -4.73 10.18 30.62 0.31 -4.42 16 21 C -0.18 -5.21 10.25 30.62 0.31 -4.90 16 22 C 0.51 16.93 6.17 84.24 0.52 17.45 16 23 O -0.56 -22.84 18.03 -3.06 -0.06 -22.90 16 24 C 0.07 1.71 1.47 -11.93 -0.02 1.70 16 25 C -0.13 -2.26 5.94 31.75 0.19 -2.07 16 26 C -0.14 -1.40 7.16 32.10 0.23 -1.17 16 27 C 0.03 0.36 7.78 72.66 0.57 0.92 16 28 O -0.34 -7.23 6.81 -148.98 -1.01 -8.24 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.04 1.09 5.25 -2.39 -0.01 1.08 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.10 2.16 5.01 -16.59 -0.08 2.07 16 34 H 0.06 1.20 8.07 -2.39 -0.02 1.18 16 35 H 0.02 0.58 6.88 -2.39 -0.02 0.57 16 36 H 0.09 3.54 4.95 -2.39 -0.01 3.53 16 37 H 0.03 1.44 7.61 -2.39 -0.02 1.42 16 38 H 0.02 0.86 7.81 -2.39 -0.02 0.84 16 39 H -0.04 -2.19 8.12 -2.39 -0.02 -2.21 16 40 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 41 H 0.01 0.39 7.58 -2.39 -0.02 0.37 16 42 H 0.07 3.01 6.32 -2.39 -0.02 3.00 16 43 H 0.11 3.49 4.09 -2.38 -0.01 3.48 16 44 H 0.08 2.63 8.03 -2.39 -0.02 2.61 16 45 H 0.11 2.63 8.14 -2.39 -0.02 2.62 16 46 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 47 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 48 H 0.08 1.52 8.12 -2.39 -0.02 1.50 16 49 H 0.10 1.61 7.65 -2.39 -0.02 1.59 16 50 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 51 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 52 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 53 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -68.12 402.66 2.76 -65.36 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.82 Total: 22.88 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 5.96 Total: -0.81 kcal Atomic # 7 Polarization: -96.65 SS G_CDS: -4.97 Total: -101.62 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -1.07 Total: -31.14 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -68.12 2.76 -65.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839989399.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.904 kcal (2) G-P(sol) polarization free energy of solvation -68.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds