Wall clock time and date at job start Tue Mar 31 2020 21:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47192 * 2 1 4 4 C 1.52999 * 109.47271 * 120.00076 * 2 1 3 5 5 H 1.09004 * 112.45110 * 50.10464 * 4 2 1 6 6 N 1.46516 * 113.09332 * 280.49801 * 4 2 1 7 7 C 1.46502 * 134.66731 * 64.36895 * 6 4 2 8 8 N 1.46904 * 109.47097 * 90.00027 * 7 6 4 9 9 C 1.46851 * 110.99711 * 30.79185 * 8 7 6 10 10 C 1.53034 * 109.52150 * 185.83520 * 9 8 7 11 11 C 1.53114 * 109.28274 * 300.82288 * 10 9 8 12 12 C 1.50697 * 109.57988 * 177.58847 * 11 10 9 13 13 H 1.07994 * 120.00312 * 240.28783 * 12 11 10 14 14 C 1.37878 * 119.99519 * 60.28286 * 12 11 10 15 15 N 1.31519 * 120.00459 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99891 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46798 * 90.00353 * 16 14 12 18 18 H 1.48503 * 109.47233 * 210.00165 * 16 14 12 19 19 H 1.48497 * 109.47203 * 330.00515 * 16 14 12 20 20 C 1.53124 * 109.15897 * 57.65184 * 11 10 9 21 21 C 1.46849 * 110.99991 * 155.00100 * 8 7 6 22 22 C 1.34799 * 90.67261 * 244.63173 * 6 4 2 23 23 O 1.21280 * 132.01264 * 179.97438 * 22 6 4 24 24 C 1.49822 * 95.98168 * 359.97438 * 22 6 4 25 25 C 1.53706 * 115.53620 * 245.03740 * 24 22 6 26 26 C 1.55473 * 101.98777 * 206.27458 * 25 24 22 27 27 C 1.55009 * 101.03890 * 33.53772 * 26 25 24 28 28 O 1.42458 * 116.43102 * 116.02721 * 24 22 6 29 29 H 1.09000 * 109.47221 * 299.99844 * 1 2 3 30 30 H 1.09003 * 109.47393 * 60.00185 * 1 2 3 31 31 H 1.09003 * 109.47136 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47203 * 239.99602 * 2 1 3 33 33 H 1.08999 * 109.47644 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47035 * 299.99730 * 3 2 1 35 35 H 1.08999 * 109.47372 * 59.99706 * 3 2 1 36 36 H 1.08998 * 109.47550 * 210.00103 * 7 6 4 37 37 H 1.09001 * 109.46862 * 330.00533 * 7 6 4 38 38 H 1.09001 * 109.46444 * 305.85508 * 9 8 7 39 39 H 1.09002 * 109.45807 * 65.82236 * 9 8 7 40 40 H 1.09001 * 109.49847 * 180.87913 * 10 9 8 41 41 H 1.09001 * 109.53501 * 60.78763 * 10 9 8 42 42 H 1.09005 * 109.52232 * 297.75410 * 11 10 9 43 43 H 0.96991 * 120.00169 * 179.97438 * 15 14 12 44 44 H 1.09002 * 109.50350 * 182.40178 * 20 11 10 45 45 H 1.09003 * 109.50351 * 62.29118 * 20 11 10 46 46 H 1.09002 * 109.45874 * 294.18209 * 21 8 7 47 47 H 1.09001 * 109.45901 * 54.14945 * 21 8 7 48 48 H 1.08996 * 110.92778 * 324.44922 * 25 24 22 49 49 H 1.09003 * 110.92548 * 88.10113 * 25 24 22 50 50 H 1.09003 * 111.10595 * 275.59035 * 26 25 24 51 51 H 1.09005 * 111.14021 * 151.49520 * 26 25 24 52 52 H 1.08999 * 110.29788 * 205.02462 * 27 26 25 53 53 H 1.08995 * 110.38654 * 82.91603 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5696 -1.6945 1.3892 6 7 2.0001 0.1145 2.4519 7 6 0.9326 0.7405 3.2361 8 7 0.4874 -0.1867 4.2850 9 6 1.5906 -1.0488 4.7281 10 6 1.0594 -2.0944 5.7112 11 6 0.4277 -1.3846 6.9119 12 6 -0.1504 -2.4070 7.8562 13 1 -1.2063 -2.3970 8.0824 14 6 0.6690 -3.3551 8.4312 15 7 1.9550 -3.3671 8.1560 16 14 -0.0475 -4.6229 9.6011 17 1 -0.4761 -5.8192 8.8326 18 1 0.9825 -5.0164 10.5959 19 1 -1.2186 -4.0410 10.3048 20 6 -0.6859 -0.4567 6.4183 21 6 -0.1041 0.5415 5.4148 22 6 3.3447 0.0789 2.5406 23 8 4.1192 0.5722 3.3328 24 6 3.5584 -0.7763 1.3292 25 6 4.1568 -2.1666 1.5967 26 6 4.8644 -2.4786 0.2480 27 6 5.3216 -1.0614 -0.1822 28 8 4.2698 -0.1792 0.2490 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 1.3074 1.6553 3.6951 37 1 0.0937 0.9792 2.5824 38 1 2.0283 -1.5508 3.8653 39 1 2.3511 -0.4417 5.2193 40 1 1.8813 -2.7242 6.0519 41 1 0.3089 -2.7113 5.2170 42 1 1.1872 -0.7987 7.4297 43 1 2.5314 -4.0339 8.5608 44 1 -1.1111 0.0835 7.2641 45 1 -1.4641 -1.0473 5.9347 46 1 0.6644 1.1411 5.9027 47 1 -0.8973 1.1944 5.0505 48 1 4.8764 -2.1299 2.4146 49 1 3.3724 -2.8949 1.8026 50 1 4.1651 -2.9014 -0.4734 51 1 5.7190 -3.1388 0.3960 52 1 5.4354 -1.0132 -1.2652 53 1 6.2593 -0.7999 0.3080 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840043688.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:16 Heat of formation + Delta-G solvation = -54.149029 kcal Electronic energy + Delta-G solvation = -31970.522325 eV Core-core repulsion = 28035.668040 eV Total energy + Delta-G solvation = -3934.854285 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.10196 -40.01722 -39.12290 -38.14840 -35.87427 -34.80929 -33.51990 -33.09753 -31.56327 -30.79159 -28.29820 -27.95715 -26.71301 -25.76070 -24.19698 -23.71731 -22.97265 -22.47734 -21.27896 -20.41660 -19.66236 -18.60861 -18.44558 -17.74941 -17.58715 -16.92553 -16.82535 -16.51350 -16.06402 -15.66787 -15.17740 -15.15846 -14.90033 -14.73623 -14.67840 -14.38774 -14.26891 -14.12856 -13.85928 -13.58925 -13.24138 -13.20539 -13.04400 -12.99354 -12.85931 -12.76196 -12.63948 -12.43186 -12.33296 -12.10509 -12.02903 -11.95333 -11.79294 -11.63798 -11.54440 -11.43762 -11.31107 -10.86845 -10.71782 -10.40986 -10.39779 -10.10174 -9.28740 -8.09006 -6.23884 1.14071 1.40657 1.41101 1.51721 1.69543 2.42825 2.65750 2.71303 2.94846 3.17786 3.24616 3.46144 3.86547 3.90157 4.00093 4.04316 4.09354 4.13917 4.15462 4.23768 4.33385 4.35055 4.39286 4.48806 4.59932 4.66350 4.67711 4.75702 4.78297 4.82140 4.87872 4.89354 4.90415 4.99686 5.01039 5.09113 5.11513 5.17134 5.19121 5.24287 5.26412 5.40715 5.49534 5.50166 5.54793 5.57462 5.60081 5.86675 5.93103 5.95822 6.09415 6.21771 6.36521 6.88459 7.00284 7.44689 8.95800 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014943 B = 0.003455 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.396313 B = 8101.608810 C = 9081.494949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 C -0.145 4.145 4 C 0.132 3.868 5 H 0.114 0.886 6 N -0.612 5.612 7 C 0.305 3.695 8 N -0.542 5.542 9 C 0.083 3.917 10 C -0.089 4.089 11 C 0.042 3.958 12 C -0.531 4.531 13 H 0.056 0.944 14 C 0.010 3.990 15 N -0.921 5.921 16 Si 0.956 3.044 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.267 1.267 20 C -0.095 4.095 21 C 0.065 3.935 22 C 0.494 3.506 23 O -0.563 6.563 24 C 0.077 3.923 25 C -0.135 4.135 26 C -0.135 4.135 27 C 0.034 3.966 28 O -0.341 6.341 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.034 0.966 36 H 0.040 0.960 37 H 0.131 0.869 38 H 0.066 0.934 39 H -0.014 1.014 40 H 0.055 0.945 41 H 0.040 0.960 42 H -0.024 1.024 43 H 0.259 0.741 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.011 0.989 47 H 0.104 0.896 48 H 0.068 0.932 49 H 0.105 0.895 50 H 0.107 0.893 51 H 0.104 0.896 52 H 0.122 0.878 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.507 3.756 -24.203 24.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 C -0.202 4.202 4 C 0.030 3.970 5 H 0.131 0.869 6 N -0.348 5.348 7 C 0.097 3.903 8 N -0.270 5.270 9 C -0.046 4.046 10 C -0.127 4.127 11 C 0.023 3.977 12 C -0.569 4.569 13 H 0.074 0.926 14 C -0.188 4.188 15 N -0.561 5.561 16 Si 0.782 3.218 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.191 1.191 20 C -0.133 4.133 21 C -0.063 4.063 22 C 0.281 3.719 23 O -0.439 6.439 24 C 0.032 3.968 25 C -0.174 4.174 26 C -0.173 4.173 27 C -0.042 4.042 28 O -0.259 6.259 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.123 0.877 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.148 0.852 38 H 0.084 0.916 39 H 0.004 0.996 40 H 0.074 0.926 41 H 0.059 0.941 42 H -0.006 1.006 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.029 0.971 47 H 0.122 0.878 48 H 0.087 0.913 49 H 0.124 0.876 50 H 0.125 0.875 51 H 0.123 0.877 52 H 0.139 0.861 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.497 3.965 -23.912 24.243 hybrid contribution 0.903 -0.045 2.054 2.244 sum 1.401 3.920 -21.858 22.251 Atomic orbital electron populations 1.21877 0.93679 1.02577 1.02125 1.21145 0.96517 0.96251 0.95887 1.21870 1.01427 0.95811 1.01061 1.22820 0.93193 0.95478 0.85556 0.86856 1.50086 1.05633 1.50942 1.28144 1.22197 0.88614 0.89939 0.89568 1.62541 1.31039 1.21798 1.11652 1.21832 0.90927 0.94712 0.97084 1.21377 0.99924 0.96763 0.94647 1.18677 0.92905 0.93378 0.92715 1.21567 0.94696 1.14191 1.26437 0.92579 1.25807 0.95092 0.99690 0.98217 1.70057 1.04962 1.36154 1.44947 0.85581 0.78114 0.79379 0.78735 1.19777 1.21230 1.19150 1.21507 0.98370 0.96713 0.96719 1.22111 0.98148 0.95362 0.90639 1.23426 0.82678 0.79671 0.86136 1.90657 1.55355 1.51423 1.46502 1.22868 0.94154 0.93630 0.86148 1.22880 1.01559 0.92452 1.00466 1.23296 1.02000 0.97252 0.94714 1.23885 0.89787 0.88557 1.01931 1.88405 1.46586 1.43808 1.47098 0.93395 0.91144 0.91767 0.87707 0.92479 0.91391 0.94704 0.94170 0.85166 0.91601 0.99588 0.92639 0.94126 1.00602 0.93177 0.92493 0.91902 0.97078 0.87832 0.91293 0.87618 0.87485 0.87736 0.86050 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.19 71.98 0.66 -1.37 16 2 C -0.08 -1.26 2.60 -10.80 -0.03 -1.29 16 3 C -0.14 -2.75 8.27 71.98 0.60 -2.15 16 4 C 0.13 2.79 3.58 37.08 0.13 2.93 16 5 H 0.11 2.19 7.71 -2.39 -0.02 2.17 16 6 N -0.61 -17.46 1.00 -890.28 -0.89 -18.35 16 7 C 0.31 8.80 6.80 170.80 1.16 9.96 16 8 N -0.54 -19.05 4.91 -908.70 -4.46 -23.52 16 9 C 0.08 3.55 4.49 86.32 0.39 3.94 16 10 C -0.09 -4.45 5.12 30.64 0.16 -4.29 16 11 C 0.04 2.20 2.16 -11.46 -0.02 2.18 16 12 C -0.53 -30.08 8.57 25.60 0.22 -29.86 16 13 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 14 C 0.01 0.57 5.31 84.65 0.45 1.02 16 15 N -0.92 -55.40 11.37 21.45 0.24 -55.16 16 16 Si 0.96 44.45 29.54 68.60 2.03 46.48 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 C -0.10 -4.00 5.32 30.65 0.16 -3.83 16 21 C 0.07 2.31 5.29 86.32 0.46 2.77 16 22 C 0.49 16.84 6.85 79.75 0.55 17.39 16 23 O -0.56 -25.09 18.03 -3.03 -0.05 -25.14 16 24 C 0.08 1.82 1.60 -11.86 -0.02 1.81 16 25 C -0.14 -2.73 6.40 31.68 0.20 -2.52 16 26 C -0.14 -1.60 7.16 32.13 0.23 -1.37 16 27 C 0.03 0.48 7.79 72.67 0.57 1.05 16 28 O -0.34 -7.30 7.86 -148.98 -1.17 -8.47 16 29 H 0.05 0.77 5.91 -2.39 -0.01 0.76 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.10 1.34 8.13 -2.39 -0.02 1.32 16 33 H 0.06 1.30 5.48 -2.39 -0.01 1.29 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.03 0.76 7.04 -2.39 -0.02 0.74 16 36 H 0.04 1.26 7.86 -2.39 -0.02 1.24 16 37 H 0.13 2.88 5.95 -2.39 -0.01 2.87 16 38 H 0.07 2.62 6.06 -2.39 -0.01 2.61 16 39 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 40 H 0.06 3.17 6.18 -2.39 -0.01 3.15 16 41 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 42 H -0.02 -1.47 8.14 -2.38 -0.02 -1.49 16 43 H 0.26 14.83 8.31 -92.72 -0.77 14.06 16 44 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 46 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 47 H 0.10 2.83 8.12 -2.39 -0.02 2.81 16 48 H 0.07 1.71 8.13 -2.39 -0.02 1.69 16 49 H 0.11 1.92 7.67 -2.39 -0.02 1.90 16 50 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 52 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 53 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -74.51 396.66 2.42 -72.09 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.87 Total: 15.73 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: 5.86 Total: -3.67 kcal Atomic # 7 Polarization: -91.91 SS G_CDS: -5.11 Total: -97.02 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -1.23 Total: -33.61 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -74.51 2.42 -72.09 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840043688.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.937 kcal (2) G-P(sol) polarization free energy of solvation -74.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds