Wall clock time and date at job start Tue Mar 31 2020 21:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47152 * 2 1 4 4 C 1.52994 * 109.47202 * 120.00059 * 2 1 3 5 5 H 1.09005 * 112.44027 * 296.93969 * 4 2 1 6 6 N 1.46512 * 113.09465 * 66.54056 * 4 2 1 7 7 C 1.46498 * 134.66480 * 295.33210 * 6 4 2 8 8 N 1.46899 * 109.46932 * 109.25164 * 7 6 4 9 9 C 1.46847 * 111.00127 * 206.16752 * 8 7 6 10 10 C 1.53032 * 109.52503 * 185.83868 * 9 8 7 11 11 C 1.53118 * 109.27844 * 300.81943 * 10 9 8 12 12 C 1.50703 * 109.52219 * 177.56030 * 11 10 9 13 13 H 1.08003 * 119.99858 * 0.12840 * 12 11 10 14 14 C 1.37875 * 119.99694 * 179.85105 * 12 11 10 15 15 N 1.31510 * 120.00395 * 0.27852 * 14 12 11 16 16 Si 1.86799 * 119.99713 * 180.27578 * 14 12 11 17 17 H 1.48504 * 109.47519 * 60.00173 * 16 14 12 18 18 H 1.48500 * 109.47101 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47191 * 299.99826 * 16 14 12 20 20 C 1.53116 * 109.21344 * 57.62554 * 11 10 9 21 21 C 1.46848 * 111.00021 * 330.37865 * 8 7 6 22 22 C 1.34803 * 90.67012 * 115.59363 * 6 4 2 23 23 O 1.21279 * 132.00852 * 179.74495 * 22 6 4 24 24 C 1.49818 * 95.98495 * 359.77274 * 22 6 4 25 25 C 1.53708 * 115.71882 * 245.24847 * 24 22 6 26 26 C 1.55476 * 101.98717 * 206.36739 * 25 24 22 27 27 C 1.55007 * 101.04014 * 33.53204 * 26 25 24 28 28 O 1.42446 * 116.25190 * 116.22617 * 24 22 6 29 29 H 1.08997 * 109.47040 * 60.19698 * 1 2 3 30 30 H 1.08995 * 109.47202 * 180.20599 * 1 2 3 31 31 H 1.09008 * 109.46743 * 300.20471 * 1 2 3 32 32 H 1.09001 * 109.47098 * 240.00277 * 2 1 3 33 33 H 1.09001 * 109.47231 * 186.08069 * 3 2 1 34 34 H 1.09001 * 109.46866 * 306.07940 * 3 2 1 35 35 H 1.08998 * 109.47182 * 66.07661 * 3 2 1 36 36 H 1.08998 * 109.47090 * 349.25252 * 7 6 4 37 37 H 1.09002 * 109.47169 * 229.24642 * 7 6 4 38 38 H 1.09005 * 109.46095 * 65.81814 * 9 8 7 39 39 H 1.09000 * 109.45530 * 305.85245 * 9 8 7 40 40 H 1.09004 * 109.50188 * 180.88237 * 10 9 8 41 41 H 1.09003 * 109.50519 * 60.76515 * 10 9 8 42 42 H 1.09002 * 109.52054 * 297.68657 * 11 10 9 43 43 H 0.96999 * 120.00119 * 179.97438 * 15 14 12 44 44 H 1.08996 * 109.50372 * 62.31167 * 20 11 10 45 45 H 1.08997 * 109.50868 * 182.43934 * 20 11 10 46 46 H 1.09003 * 109.45825 * 294.17351 * 21 8 7 47 47 H 1.09000 * 109.46210 * 54.15461 * 21 8 7 48 48 H 1.09007 * 110.92501 * 324.53482 * 25 24 22 49 49 H 1.09000 * 110.93254 * 88.19088 * 25 24 22 50 50 H 1.09000 * 111.09983 * 275.58660 * 26 25 24 51 51 H 1.09001 * 111.10864 * 151.47629 * 26 25 24 52 52 H 1.08993 * 110.30389 * 205.02562 * 27 26 25 53 53 H 1.08999 * 110.38438 * 82.91108 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7484 -0.2156 2.1698 6 7 1.7258 -2.1522 1.2551 7 6 0.4881 -2.9346 1.3012 8 7 0.2655 -3.5761 -0.0014 9 6 -1.1634 -3.8294 -0.2260 10 6 -1.3444 -4.6257 -1.5202 11 6 -0.7581 -3.8299 -2.6896 12 6 -0.8796 -4.6350 -3.9578 13 1 -1.3317 -5.6155 -3.9337 14 6 -0.4187 -4.1174 -5.1497 15 7 0.1318 -2.9234 -5.1790 16 14 -0.5762 -5.1121 -6.7229 17 1 -2.0095 -5.3981 -6.9864 18 1 -0.0089 -4.3386 -7.8565 19 1 0.1650 -6.3906 -6.5766 20 6 0.7182 -3.5363 -2.4094 21 6 0.8396 -2.7729 -1.0885 22 6 3.0381 -2.4568 1.2071 23 8 3.6248 -3.5180 1.1863 24 6 3.5265 -1.0406 1.1890 25 6 4.2457 -0.5994 -0.0959 26 6 5.1726 0.5345 0.4259 27 6 5.5101 0.0123 1.8458 28 8 4.3072 -0.6290 2.3071 29 1 -0.3633 0.5108 -0.8917 30 1 -0.3633 -1.0276 0.0037 31 1 -0.3633 0.5171 0.8882 32 1 1.8934 -0.5138 -0.8900 33 1 3.1246 1.4445 -0.1089 34 1 1.5906 1.9868 -0.8306 35 1 1.7683 1.9240 0.9394 36 1 -0.3498 -2.2759 1.5298 37 1 0.5702 -3.6995 2.0735 38 1 -1.6923 -2.8797 -0.3068 39 1 -1.5669 -4.3996 0.6107 40 1 -2.4062 -4.8000 -1.6947 41 1 -0.8274 -5.5815 -1.4348 42 1 -1.3016 -2.8915 -2.8004 43 1 0.4564 -2.5594 -6.0175 44 1 1.2687 -4.4744 -2.3383 45 1 1.1293 -2.9328 -3.2186 46 1 0.3013 -1.8282 -1.1653 47 1 1.8909 -2.5759 -0.8783 48 1 4.8304 -1.4181 -0.5154 49 1 3.5350 -0.2155 -0.8277 50 1 4.6412 1.4851 0.4733 51 1 6.0713 0.6193 -0.1850 52 1 5.7715 0.8424 2.5019 53 1 6.3285 -0.7063 1.8015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840043691.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:19 Heat of formation + Delta-G solvation = -39.887209 kcal Electronic energy + Delta-G solvation = -32479.519150 eV Core-core repulsion = 28545.283304 eV Total energy + Delta-G solvation = -3934.235846 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.20875 -40.08296 -39.16633 -38.09112 -35.93666 -35.32745 -33.39513 -33.16363 -31.53775 -30.69836 -28.44621 -27.84549 -26.66787 -25.67656 -24.25898 -23.71416 -23.24905 -22.54765 -21.21646 -20.46524 -19.37464 -18.58822 -18.41034 -18.30099 -17.46983 -17.12533 -16.68072 -16.45807 -16.11065 -15.68199 -15.43000 -15.29207 -14.94012 -14.78999 -14.60411 -14.29801 -14.11073 -13.95979 -13.83324 -13.57378 -13.30941 -13.14079 -13.07092 -12.96952 -12.86077 -12.75912 -12.59501 -12.39909 -12.28461 -12.19150 -12.04953 -11.94139 -11.81287 -11.71595 -11.63055 -11.35551 -11.29984 -10.84460 -10.68595 -10.38189 -10.37700 -9.99443 -9.10540 -8.08840 -6.21231 1.16448 1.39249 1.41059 1.48020 1.68901 2.42647 2.63578 2.65190 3.03771 3.18172 3.26014 3.43731 3.78721 3.87328 3.89802 4.03318 4.06778 4.16726 4.19836 4.25841 4.31380 4.34840 4.37610 4.47740 4.55423 4.64701 4.66429 4.72125 4.75862 4.77962 4.86799 4.87963 4.90481 4.92239 4.98123 5.03242 5.06253 5.17979 5.18173 5.22327 5.27865 5.35692 5.40333 5.50063 5.53851 5.56534 5.61523 5.80125 5.97862 6.00747 6.21635 6.29542 6.40454 6.88860 7.02631 7.45836 8.95461 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014567 B = 0.003696 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.723464 B = 7573.367797 C = 8063.908983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.104 4.104 3 C -0.152 4.152 4 C 0.137 3.863 5 H 0.123 0.877 6 N -0.619 5.619 7 C 0.307 3.693 8 N -0.569 5.569 9 C 0.071 3.929 10 C -0.101 4.101 11 C 0.050 3.950 12 C -0.537 4.537 13 H 0.047 0.953 14 C 0.016 3.984 15 N -0.913 5.913 16 Si 0.949 3.051 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.278 1.278 20 C -0.095 4.095 21 C 0.070 3.930 22 C 0.497 3.503 23 O -0.554 6.554 24 C 0.077 3.923 25 C -0.146 4.146 26 C -0.142 4.142 27 C 0.038 3.962 28 O -0.356 6.356 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.038 0.962 39 H 0.092 0.908 40 H 0.060 0.940 41 H 0.041 0.959 42 H -0.002 1.002 43 H 0.260 0.740 44 H 0.008 0.992 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.047 0.953 48 H 0.070 0.930 49 H 0.112 0.888 50 H 0.111 0.889 51 H 0.109 0.891 52 H 0.123 0.877 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.680 15.033 15.276 22.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.123 4.123 3 C -0.210 4.210 4 C 0.034 3.966 5 H 0.141 0.859 6 N -0.356 5.356 7 C 0.099 3.901 8 N -0.298 5.298 9 C -0.057 4.057 10 C -0.139 4.139 11 C 0.032 3.968 12 C -0.576 4.576 13 H 0.065 0.935 14 C -0.183 4.183 15 N -0.553 5.553 16 Si 0.774 3.226 17 H -0.195 1.195 18 H -0.207 1.207 19 H -0.203 1.203 20 C -0.133 4.133 21 C -0.058 4.058 22 C 0.283 3.717 23 O -0.429 6.429 24 C 0.033 3.967 25 C -0.183 4.183 26 C -0.179 4.179 27 C -0.037 4.037 28 O -0.274 6.274 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.056 0.944 39 H 0.110 0.890 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.016 0.984 43 H 0.069 0.931 44 H 0.027 0.973 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.065 0.935 48 H 0.089 0.911 49 H 0.130 0.870 50 H 0.129 0.871 51 H 0.128 0.872 52 H 0.141 0.859 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.051 13.974 15.413 21.667 hybrid contribution -0.395 -0.615 -1.438 1.613 sum 5.656 13.359 13.975 20.144 Atomic orbital electron populations 1.22050 0.94455 1.01594 1.02994 1.21528 0.96784 0.98132 0.95856 1.22087 1.02585 0.92772 1.03520 1.22691 0.91278 0.81371 1.01258 0.85940 1.50161 1.05445 1.08586 1.71407 1.22094 0.83790 0.92485 0.91743 1.62303 1.16481 1.48658 1.02313 1.22055 0.86123 0.99080 0.98423 1.21544 0.99624 0.98449 0.94249 1.18602 0.92063 0.93985 0.92200 1.21563 1.39225 1.02744 0.94022 0.93471 1.25670 0.94887 0.95951 1.01754 1.69978 1.40986 1.17348 1.26947 0.85764 0.78565 0.78776 0.79448 1.19492 1.20660 1.20346 1.21440 0.99327 0.97529 0.95012 1.22276 0.97894 0.95184 0.90410 1.23237 0.83320 0.91063 0.74049 1.90642 1.67839 1.33549 1.50880 1.22857 0.93427 0.90345 0.90098 1.23131 0.99899 1.00134 0.95159 1.23478 1.00684 0.98267 0.95473 1.23885 0.85925 0.97394 0.96543 1.88342 1.34052 1.77014 1.27992 0.92306 0.93615 0.90350 0.91770 0.90364 0.91584 0.90543 0.89329 0.89263 0.94402 0.88966 0.92150 0.94022 0.98426 0.93060 0.97325 0.91981 0.92662 0.93490 0.91115 0.86955 0.87064 0.87250 0.85927 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 7.89 71.98 0.57 -2.69 16 2 C -0.10 -2.12 1.38 -10.79 -0.01 -2.13 16 3 C -0.15 -2.08 8.68 71.98 0.62 -1.46 16 4 C 0.14 2.99 3.51 37.07 0.13 3.12 16 5 H 0.12 2.17 8.14 -2.38 -0.02 2.16 16 6 N -0.62 -17.97 1.98 -890.37 -1.76 -19.73 16 7 C 0.31 8.75 6.30 170.81 1.08 9.82 16 8 N -0.57 -20.47 4.88 -908.70 -4.44 -24.90 16 9 C 0.07 2.37 5.28 86.32 0.46 2.82 16 10 C -0.10 -4.25 5.32 30.64 0.16 -4.09 16 11 C 0.05 2.56 2.16 -11.46 -0.02 2.53 16 12 C -0.54 -30.56 8.56 25.60 0.22 -30.34 16 13 H 0.05 2.66 7.74 -2.91 -0.02 2.64 16 14 C 0.02 0.91 5.31 84.65 0.45 1.36 16 15 N -0.91 -52.83 11.37 21.45 0.24 -52.58 16 16 Si 0.95 44.58 29.54 68.60 2.03 46.60 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 20 C -0.09 -4.77 5.13 30.65 0.16 -4.61 16 21 C 0.07 2.78 3.42 86.33 0.30 3.07 16 22 C 0.50 17.24 7.36 79.74 0.59 17.83 16 23 O -0.55 -24.66 18.03 -3.03 -0.05 -24.71 16 24 C 0.08 1.91 1.77 -11.85 -0.02 1.89 16 25 C -0.15 -3.03 5.42 31.68 0.17 -2.86 16 26 C -0.14 -1.72 6.76 32.13 0.22 -1.51 16 27 C 0.04 0.56 7.79 72.67 0.57 1.13 16 28 O -0.36 -8.22 11.16 -148.98 -1.66 -9.88 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.05 1.17 3.19 -2.39 -0.01 1.16 16 31 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.06 1.69 4.60 -2.39 -0.01 1.68 16 33 H 0.08 0.91 3.38 -2.39 -0.01 0.90 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.09 1.99 6.79 -2.39 -0.02 1.98 16 37 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.04 1.20 7.77 -2.38 -0.02 1.18 16 39 H 0.09 2.53 8.12 -2.39 -0.02 2.51 16 40 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 43 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 44 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.06 3.46 6.17 -2.39 -0.01 3.45 16 46 H 0.06 2.08 3.99 -2.39 -0.01 2.07 16 47 H 0.05 1.92 4.94 -2.39 -0.01 1.91 16 48 H 0.07 1.76 8.13 -2.38 -0.02 1.74 16 49 H 0.11 2.27 4.21 -2.39 -0.01 2.26 16 50 H 0.11 0.90 6.01 -2.39 -0.01 0.88 16 51 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 53 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -73.93 379.51 0.89 -73.04 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.91 Total: 18.28 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: 5.62 Total: -6.11 kcal Atomic # 7 Polarization: -91.27 SS G_CDS: -5.95 Total: -97.22 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -1.72 Total: -34.59 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -73.93 0.89 -73.04 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840043691.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.152 kcal (2) G-P(sol) polarization free energy of solvation -73.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds