Wall clock time and date at job start Tue Mar 31 2020 21:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47456 * 2 1 4 4 C 1.53008 * 109.46467 * 119.99740 * 2 1 3 5 5 H 1.09000 * 112.81300 * 310.03037 * 4 2 1 6 6 N 1.45838 * 113.50267 * 179.12091 * 4 2 1 7 7 C 1.46493 * 133.17929 * 65.32403 * 6 4 2 8 8 N 1.46895 * 109.47292 * 97.16426 * 7 6 4 9 9 C 1.46851 * 111.00213 * 204.88960 * 8 7 6 10 10 C 1.53036 * 109.52736 * 174.16223 * 9 8 7 11 11 C 1.53118 * 109.27756 * 59.17565 * 10 9 8 12 12 C 1.50699 * 109.52188 * 182.37899 * 11 10 9 13 13 H 1.08005 * 119.99965 * 359.87679 * 12 11 10 14 14 C 1.37880 * 120.00162 * 179.87085 * 12 11 10 15 15 N 1.31514 * 119.99690 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00187 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47053 * 90.00100 * 16 14 12 18 18 H 1.48500 * 109.47145 * 210.00554 * 16 14 12 19 19 H 1.48501 * 109.46939 * 330.00169 * 16 14 12 20 20 C 1.53117 * 109.21292 * 302.31373 * 11 10 9 21 21 C 1.46847 * 111.00329 * 80.67840 * 8 7 6 22 22 C 1.33988 * 93.64395 * 245.06174 * 6 4 2 23 23 O 1.21281 * 133.35818 * 180.22329 * 22 6 4 24 24 C 1.49458 * 93.28261 * 0.22252 * 22 6 4 25 25 C 1.53627 * 115.52892 * 115.99994 * 24 22 6 26 26 C 1.54938 * 103.95174 * 133.28198 * 25 24 22 27 27 C 1.55026 * 102.11922 * 20.84708 * 26 25 24 28 28 O 1.43206 * 115.85817 * 243.59927 * 24 22 6 29 29 H 1.08994 * 109.47309 * 295.41208 * 1 2 3 30 30 H 1.09006 * 109.46812 * 55.41275 * 1 2 3 31 31 H 1.08997 * 109.47291 * 175.40606 * 1 2 3 32 32 H 1.08998 * 109.47070 * 239.99187 * 2 1 3 33 33 H 1.09006 * 109.47352 * 68.32717 * 3 2 1 34 34 H 1.08998 * 109.47109 * 188.33062 * 3 2 1 35 35 H 1.09004 * 109.46762 * 308.32790 * 3 2 1 36 36 H 1.09004 * 109.46694 * 337.16431 * 7 6 4 37 37 H 1.09003 * 109.47098 * 217.16817 * 7 6 4 38 38 H 1.08998 * 109.46671 * 54.14017 * 9 8 7 39 39 H 1.09008 * 109.46053 * 294.17724 * 9 8 7 40 40 H 1.08999 * 109.49912 * 299.23520 * 10 9 8 41 41 H 1.08992 * 109.53645 * 179.14052 * 10 9 8 42 42 H 1.08998 * 109.52179 * 62.25431 * 11 10 9 43 43 H 0.97002 * 119.99692 * 180.02562 * 15 14 12 44 44 H 1.08999 * 109.50194 * 177.62463 * 20 11 10 45 45 H 1.08998 * 109.50871 * 297.74547 * 20 11 10 46 46 H 1.09003 * 109.46147 * 305.85627 * 21 8 7 47 47 H 1.09001 * 109.46288 * 65.82050 * 21 8 7 48 48 H 1.09003 * 110.53131 * 251.89730 * 25 24 22 49 49 H 1.08996 * 110.53728 * 14.65739 * 25 24 22 50 50 H 1.08996 * 110.87522 * 139.00755 * 26 25 24 51 51 H 1.09008 * 110.86967 * 262.69360 * 26 25 24 52 52 H 1.09008 * 110.60007 * 81.81061 * 27 26 25 53 53 H 1.08998 * 110.60085 * 204.75952 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2494 5 1 1.5714 -0.3619 2.1656 6 7 3.4945 -0.7904 1.3281 7 6 4.5397 0.2252 1.4765 8 7 4.9302 0.3232 2.8893 9 6 5.4905 1.6469 3.1898 10 6 5.7499 1.7632 4.6935 11 6 6.7263 0.6652 5.1244 12 6 6.9404 0.7381 6.6144 13 1 6.4330 1.4931 7.1966 14 6 7.7839 -0.1592 7.2343 15 7 8.4021 -1.0784 6.5253 16 14 8.0488 -0.0694 9.0813 17 1 7.0439 -0.9204 9.7674 18 1 9.4140 -0.5528 9.4097 19 1 7.8993 1.3367 9.5349 20 6 6.1413 -0.7015 4.7578 21 6 5.8699 -0.7457 3.2510 22 6 3.5222 -2.1257 1.2207 23 8 4.4194 -2.9417 1.2096 24 6 2.0350 -2.2343 1.1198 25 6 1.5002 -2.7853 -0.2108 26 6 0.4517 -3.8427 0.2171 27 6 0.1178 -3.4024 1.6655 28 8 1.3870 -2.9431 2.1821 29 1 -0.3633 0.4410 0.9282 30 1 -0.3633 0.5834 -0.8461 31 1 -0.3634 -1.0243 -0.0823 32 1 1.8933 -0.5140 -0.8899 33 1 1.8034 1.9115 0.9551 34 1 3.1198 1.4460 -0.1489 35 1 1.5603 1.9974 -0.8062 36 1 4.1607 1.1890 1.1366 37 1 5.4068 -0.0557 0.8786 38 1 4.7847 2.4185 2.8823 39 1 6.4278 1.7760 2.6485 40 1 4.8108 1.6481 5.2347 41 1 6.1800 2.7399 4.9148 42 1 7.6786 0.8031 4.6124 43 1 8.9952 -1.7099 6.9615 44 1 6.8512 -1.4845 5.0243 45 1 5.2084 -0.8555 5.3001 46 1 5.4395 -1.7120 2.9880 47 1 6.8054 -0.6055 2.7095 48 1 1.0284 -1.9921 -0.7910 49 1 2.3029 -3.2519 -0.7817 50 1 -0.4327 -3.7918 -0.4179 51 1 0.8828 -4.8439 0.2051 52 1 -0.6106 -2.5914 1.6616 53 1 -0.2502 -4.2470 2.2479 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840043693.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:22 Heat of formation + Delta-G solvation = -62.061239 kcal Electronic energy + Delta-G solvation = -31519.579533 eV Core-core repulsion = 27584.382149 eV Total energy + Delta-G solvation = -3935.197384 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.08288 -39.98593 -39.17012 -38.15803 -35.95139 -35.18601 -33.42449 -33.09274 -31.56725 -30.80098 -28.24135 -27.88471 -26.75182 -25.75843 -23.99235 -23.79302 -22.99939 -22.68534 -21.30377 -20.45794 -19.38805 -18.61334 -18.48090 -18.15876 -17.46021 -17.17114 -16.55760 -16.38040 -15.95214 -15.64625 -15.49233 -15.21365 -14.99233 -14.83092 -14.73647 -14.38087 -14.23042 -14.09586 -13.84922 -13.44105 -13.40768 -13.14125 -12.92351 -12.88639 -12.79684 -12.69911 -12.64036 -12.40542 -12.36795 -12.11835 -12.09794 -11.98444 -11.73999 -11.64139 -11.61189 -11.40892 -11.11556 -10.88359 -10.74915 -10.55907 -10.44755 -10.06302 -9.35374 -8.10765 -6.25424 1.10779 1.38028 1.39287 1.49540 1.84325 2.41081 2.66894 2.92790 2.98087 3.16011 3.23851 3.53732 3.81552 3.83863 3.98725 4.01929 4.06453 4.17548 4.19847 4.22715 4.32967 4.36170 4.37884 4.45948 4.47088 4.65996 4.68963 4.74995 4.77851 4.79231 4.88245 4.91030 4.92055 5.00057 5.01806 5.04097 5.10325 5.15848 5.19188 5.22300 5.25506 5.40134 5.45535 5.49533 5.53565 5.56919 5.58016 5.80937 5.91911 5.93137 6.10849 6.22703 6.35372 6.87224 7.05221 7.42959 8.93872 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016248 B = 0.003096 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.853347 B = 9043.025192 C = 9815.670830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.151 4.151 4 C 0.131 3.869 5 H 0.098 0.902 6 N -0.597 5.597 7 C 0.286 3.714 8 N -0.555 5.555 9 C 0.071 3.929 10 C -0.098 4.098 11 C 0.046 3.954 12 C -0.532 4.532 13 H 0.056 0.944 14 C 0.007 3.993 15 N -0.921 5.921 16 Si 0.957 3.043 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.263 1.263 20 C -0.090 4.090 21 C 0.076 3.924 22 C 0.507 3.493 23 O -0.555 6.555 24 C 0.060 3.940 25 C -0.134 4.134 26 C -0.145 4.145 27 C 0.033 3.967 28 O -0.375 6.375 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.080 0.920 36 H 0.137 0.863 37 H 0.046 0.954 38 H 0.105 0.895 39 H 0.030 0.970 40 H 0.050 0.950 41 H 0.064 0.936 42 H -0.010 1.010 43 H 0.259 0.741 44 H 0.053 0.947 45 H 0.022 0.978 46 H 0.043 0.957 47 H 0.012 0.988 48 H 0.132 0.868 49 H 0.073 0.927 50 H 0.123 0.877 51 H 0.070 0.930 52 H 0.092 0.908 53 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.814 3.183 -20.048 30.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.208 4.208 4 C 0.028 3.972 5 H 0.116 0.884 6 N -0.332 5.332 7 C 0.077 3.923 8 N -0.283 5.283 9 C -0.056 4.056 10 C -0.135 4.135 11 C 0.027 3.973 12 C -0.570 4.570 13 H 0.074 0.926 14 C -0.191 4.191 15 N -0.561 5.561 16 Si 0.782 3.218 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.187 1.187 20 C -0.128 4.128 21 C -0.052 4.052 22 C 0.293 3.707 23 O -0.431 6.431 24 C 0.016 3.984 25 C -0.172 4.172 26 C -0.182 4.182 27 C -0.042 4.042 28 O -0.293 6.293 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.155 0.845 37 H 0.064 0.936 38 H 0.124 0.876 39 H 0.048 0.952 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.008 0.992 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.041 0.959 46 H 0.062 0.938 47 H 0.031 0.969 48 H 0.149 0.851 49 H 0.092 0.908 50 H 0.141 0.859 51 H 0.089 0.911 52 H 0.110 0.890 53 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -22.381 2.688 -19.509 29.811 hybrid contribution 1.875 -0.547 1.026 2.206 sum -20.506 2.141 -18.482 27.689 Atomic orbital electron populations 1.21918 0.91870 1.03257 1.03428 1.21449 0.98014 0.96735 0.95141 1.21949 1.00926 0.94918 1.03033 1.22720 0.79082 0.94144 1.01250 0.88445 1.49999 1.08241 1.06144 1.68793 1.22127 0.89203 0.92905 0.88086 1.61693 1.42454 1.03870 1.20257 1.22078 0.98079 0.88911 0.96566 1.21527 0.98954 0.98616 0.94443 1.18650 0.92589 0.91561 0.94488 1.21603 1.26180 1.15046 0.94179 0.92603 1.25845 0.95514 0.95067 1.02697 1.70053 1.30265 1.18815 1.36993 0.85571 0.77204 0.78694 0.80298 1.20421 1.20944 1.18694 1.21404 0.98106 1.01488 0.91834 1.21953 0.92279 0.93611 0.97324 1.22280 0.91124 0.82845 0.74490 1.90675 1.48649 1.51361 1.52455 1.23375 0.90334 0.93301 0.91383 1.22981 0.99849 1.00734 0.93626 1.23202 0.99880 0.98680 0.96454 1.24072 0.84764 1.00497 0.94860 1.88923 1.33574 1.72338 1.34510 0.92122 0.90090 0.91129 0.89380 0.92401 0.93081 0.90159 0.84529 0.93620 0.87649 0.95168 0.93083 0.91763 0.99236 0.93207 0.92804 0.95903 0.93801 0.96945 0.85060 0.90779 0.85876 0.91117 0.89007 0.87674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 8.75 71.98 0.63 -0.36 16 2 C -0.09 -1.11 2.22 -10.79 -0.02 -1.13 16 3 C -0.15 -1.68 8.31 71.98 0.60 -1.09 16 4 C 0.13 2.72 3.61 41.59 0.15 2.87 16 5 H 0.10 2.19 8.14 -2.39 -0.02 2.18 16 6 N -0.60 -17.16 3.21 -869.83 -2.79 -19.95 16 7 C 0.29 8.25 6.03 170.81 1.03 9.28 16 8 N -0.56 -20.53 4.75 -908.44 -4.32 -24.84 16 9 C 0.07 2.39 5.40 86.32 0.47 2.85 16 10 C -0.10 -4.09 5.32 30.65 0.16 -3.93 16 11 C 0.05 2.44 2.16 -11.46 -0.02 2.41 16 12 C -0.53 -30.90 8.56 25.60 0.22 -30.68 16 13 H 0.06 3.14 7.75 -2.91 -0.02 3.12 16 14 C 0.01 0.40 5.30 84.66 0.45 0.85 16 15 N -0.92 -57.06 11.36 21.45 0.24 -56.82 16 16 Si 0.96 45.90 29.54 68.60 2.03 47.93 16 17 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 18 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 19 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 20 C -0.09 -4.88 5.13 30.69 0.16 -4.72 16 21 C 0.08 3.56 5.31 86.37 0.46 4.02 16 22 C 0.51 17.64 8.04 84.24 0.68 18.32 16 23 O -0.55 -24.79 16.94 -3.03 -0.05 -24.84 16 24 C 0.06 1.46 1.62 -12.08 -0.02 1.44 16 25 C -0.13 -2.06 5.40 31.47 0.17 -1.89 16 26 C -0.14 -1.68 7.16 31.95 0.23 -1.45 16 27 C 0.03 0.50 7.72 72.68 0.56 1.06 16 28 O -0.38 -10.28 11.29 -148.98 -1.68 -11.96 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.08 0.31 8.14 -2.38 -0.02 0.30 16 31 H 0.07 0.35 6.29 -2.39 -0.02 0.33 16 32 H 0.09 0.96 6.37 -2.39 -0.02 0.94 16 33 H 0.06 0.71 8.13 -2.38 -0.02 0.69 16 34 H 0.05 0.66 5.68 -2.39 -0.01 0.64 16 35 H 0.08 0.60 8.12 -2.39 -0.02 0.58 16 36 H 0.14 2.83 4.91 -2.39 -0.01 2.82 16 37 H 0.05 1.41 7.92 -2.39 -0.02 1.39 16 38 H 0.11 2.65 7.91 -2.39 -0.02 2.63 16 39 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 42 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 43 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 44 H 0.05 3.31 6.16 -2.39 -0.01 3.30 16 45 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.04 2.20 6.14 -2.39 -0.01 2.18 16 47 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.13 1.15 3.97 -2.39 -0.01 1.14 16 49 H 0.07 1.35 7.97 -2.39 -0.02 1.33 16 50 H 0.12 0.52 8.14 -2.39 -0.02 0.51 16 51 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 52 H 0.09 0.90 7.98 -2.38 -0.02 0.88 16 53 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -80.11 395.78 0.21 -79.90 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 0.89 Total: 12.74 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 5.89 Total: -2.15 kcal Atomic # 7 Polarization: -94.75 SS G_CDS: -6.86 Total: -101.62 kcal Atomic # 8 Polarization: -35.07 SS G_CDS: -1.73 Total: -36.80 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -80.11 0.21 -79.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840043693.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.839 kcal (2) G-P(sol) polarization free energy of solvation -80.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds