Wall clock time and date at job start Tue Mar 31 2020 21:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46923 * 2 1 4 4 C 1.52998 * 109.47141 * 119.99841 * 2 1 3 5 5 H 1.09003 * 112.80910 * 64.74390 * 4 2 1 6 6 N 1.45834 * 113.51050 * 293.84023 * 4 2 1 7 7 C 1.46498 * 133.18130 * 65.27170 * 6 4 2 8 8 N 1.46904 * 109.47004 * 97.26316 * 7 6 4 9 9 C 1.46848 * 110.99482 * 85.07121 * 8 7 6 10 10 C 1.53041 * 109.52291 * 174.16297 * 9 8 7 11 11 C 1.53123 * 109.27734 * 59.17854 * 10 9 8 12 12 C 1.53116 * 109.16258 * 302.34682 * 11 10 9 13 13 H 1.09007 * 109.50373 * 297.71507 * 12 11 10 14 14 C 1.50697 * 109.50692 * 177.59484 * 12 11 10 15 15 H 1.08003 * 119.99843 * 275.26264 * 14 12 11 16 16 C 1.37875 * 120.00065 * 95.25412 * 14 12 11 17 17 N 1.31516 * 120.00210 * 183.97839 * 16 14 12 18 18 Si 1.86801 * 119.99872 * 3.98033 * 16 14 12 19 19 H 1.48510 * 109.46945 * 85.95324 * 18 16 14 20 20 H 1.48498 * 109.47413 * 205.95005 * 18 16 14 21 21 H 1.48493 * 109.47435 * 325.95554 * 18 16 14 22 22 C 1.46850 * 110.99807 * 320.86474 * 8 7 6 23 23 C 1.33975 * 93.64495 * 245.02486 * 6 4 2 24 24 O 1.21281 * 133.35975 * 180.25695 * 23 6 4 25 25 C 1.49464 * 93.27693 * 0.25395 * 23 6 4 26 26 C 1.53635 * 115.49736 * 243.97563 * 25 23 6 27 27 C 1.54940 * 103.95099 * 230.38920 * 26 25 23 28 28 C 1.55034 * 102.11660 * 20.86082 * 27 26 25 29 29 O 1.43204 * 115.82622 * 116.43682 * 25 23 6 30 30 H 1.09004 * 109.47348 * 65.99423 * 1 2 3 31 31 H 1.08998 * 109.47095 * 185.99246 * 1 2 3 32 32 H 1.08997 * 109.47713 * 305.99674 * 1 2 3 33 33 H 1.08994 * 109.46920 * 240.00189 * 2 1 3 34 34 H 1.09001 * 109.47076 * 196.54571 * 3 2 1 35 35 H 1.09000 * 109.47618 * 316.54415 * 3 2 1 36 36 H 1.09003 * 109.47359 * 76.54396 * 3 2 1 37 37 H 1.09008 * 109.47132 * 337.27355 * 7 6 4 38 38 H 1.08993 * 109.47924 * 217.27098 * 7 6 4 39 39 H 1.09001 * 109.46697 * 54.14974 * 9 8 7 40 40 H 1.08999 * 109.45561 * 294.17391 * 9 8 7 41 41 H 1.08992 * 109.50656 * 179.12125 * 10 9 8 42 42 H 1.09005 * 109.50174 * 299.24253 * 10 9 8 43 43 H 1.08997 * 109.52049 * 62.25514 * 11 10 9 44 44 H 1.08996 * 109.51881 * 182.44069 * 11 10 9 45 45 H 0.97003 * 119.99996 * 180.02562 * 17 16 14 46 46 H 1.08997 * 109.46170 * 305.84967 * 22 8 7 47 47 H 1.09004 * 109.46309 * 65.83502 * 22 8 7 48 48 H 1.08998 * 110.52871 * 349.00407 * 26 25 23 49 49 H 1.08995 * 110.53353 * 111.62962 * 26 25 23 50 50 H 1.08998 * 110.87504 * 139.01418 * 27 26 25 51 51 H 1.09000 * 110.87416 * 262.49505 * 27 26 25 52 52 H 1.08995 * 110.60216 * 81.81316 * 28 27 26 53 53 H 1.09000 * 110.59733 * 204.60098 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7767 -1.7788 1.2637 6 7 1.7243 -0.0262 2.4919 7 6 0.4661 0.2864 3.1739 8 7 0.2102 -0.7188 4.2142 9 6 0.8990 -0.3703 5.4634 10 6 0.4950 -1.3557 6.5624 11 6 0.8696 -2.7762 6.1303 12 6 0.1776 -3.0965 4.8025 13 1 -0.9035 -3.0652 4.9386 14 6 0.5876 -4.4710 4.3401 15 1 1.5020 -4.6020 3.7805 16 6 -0.2045 -5.5612 4.6316 17 7 0.1913 -6.7699 4.2968 18 14 -1.8398 -5.3215 5.5020 19 1 -2.8955 -5.0272 4.4998 20 1 -2.1922 -6.5590 6.2433 21 1 -1.7320 -4.1876 6.4548 22 6 0.5908 -2.0605 3.7545 23 6 3.0095 0.2162 2.7827 24 8 3.5633 0.7743 3.7061 25 6 3.5059 -0.4580 1.5446 26 6 4.3634 -1.7122 1.7730 27 6 5.6235 -1.4662 0.9056 28 6 5.6007 0.0737 0.7280 29 8 4.1936 0.3814 0.6102 30 1 -0.3634 0.4181 -0.9388 31 1 -0.3633 -1.0220 0.1073 32 1 -0.3634 0.6040 0.8314 33 1 1.8933 -0.5138 -0.8900 34 1 3.0898 1.4567 -0.2927 35 1 1.4578 2.0338 -0.7068 36 1 1.9356 1.8648 0.9995 37 1 -0.3505 0.2778 2.4519 38 1 0.5360 1.2731 3.6315 39 1 0.6208 0.6405 5.7618 40 1 1.9770 -0.4197 5.3096 41 1 1.0184 -1.1063 7.4853 42 1 -0.5810 -1.2971 6.7262 43 1 1.9500 -2.8455 6.0040 44 1 0.5445 -3.4859 6.8910 45 1 -0.3662 -7.5369 4.5016 46 1 0.0886 -2.2774 2.8117 47 1 1.6703 -2.1020 3.6090 48 1 4.6351 -1.8032 2.8247 49 1 3.8337 -2.6038 1.4375 50 1 6.5244 -1.7833 1.4307 51 1 5.5380 -1.9726 -0.0559 52 1 6.0294 0.5668 1.6004 53 1 6.1360 0.3634 -0.1763 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853525303.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:28 Heat of formation + Delta-G solvation = -53.343944 kcal Electronic energy + Delta-G solvation = -32667.492016 eV Core-core repulsion = 28732.672642 eV Total energy + Delta-G solvation = -3934.819374 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.23637 -40.08157 -39.01335 -38.18579 -35.64956 -34.87199 -33.96136 -33.15096 -32.05035 -30.64504 -27.98546 -27.73568 -26.96195 -26.03144 -24.77969 -23.27683 -22.86046 -22.52904 -21.32925 -20.48038 -19.76604 -18.93900 -18.52893 -17.72623 -17.54770 -17.07159 -16.85955 -16.33818 -16.00532 -15.70049 -15.33575 -15.15692 -15.05048 -14.77612 -14.61247 -14.43116 -14.38614 -14.22909 -14.14380 -13.59529 -13.43517 -13.20700 -13.15349 -12.96121 -12.85304 -12.82633 -12.65350 -12.48436 -12.34204 -12.04226 -11.88576 -11.83463 -11.81815 -11.55589 -11.45511 -11.41426 -11.26647 -11.13126 -10.89520 -10.65729 -10.46478 -10.06768 -9.42882 -8.27450 -6.30790 1.20068 1.36606 1.38912 1.49861 1.84814 2.37082 2.62792 2.80639 2.95282 3.11507 3.23500 3.50885 3.79650 3.85910 3.95203 4.02244 4.03481 4.09994 4.13431 4.23434 4.30106 4.31964 4.42177 4.46622 4.54703 4.57530 4.59567 4.72394 4.76601 4.79318 4.81909 4.83445 4.88364 4.89622 4.97134 4.98262 5.07804 5.10272 5.12820 5.13289 5.17701 5.26741 5.40717 5.44505 5.50643 5.55425 5.61966 5.64179 5.69872 5.78442 6.03955 6.07815 6.35631 6.75844 7.04213 7.35731 8.88953 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013069 B = 0.004205 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.009765 B = 6656.625261 C = 6908.809600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.081 4.081 3 C -0.143 4.143 4 C 0.138 3.862 5 H 0.101 0.899 6 N -0.618 5.618 7 C 0.279 3.721 8 N -0.541 5.541 9 C 0.062 3.938 10 C -0.112 4.112 11 C -0.110 4.110 12 C 0.018 3.982 13 H 0.037 0.963 14 C -0.509 4.509 15 H 0.031 0.969 16 C 0.019 3.981 17 N -0.947 5.947 18 Si 0.939 3.061 19 H -0.265 1.265 20 H -0.292 1.292 21 H -0.249 1.249 22 C 0.097 3.903 23 C 0.502 3.498 24 O -0.551 6.551 25 C 0.063 3.937 26 C -0.135 4.135 27 C -0.139 4.139 28 C 0.028 3.972 29 O -0.326 6.326 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.029 0.971 37 H 0.126 0.874 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.012 0.988 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.031 0.969 44 H 0.041 0.959 45 H 0.265 0.735 46 H 0.066 0.934 47 H 0.013 0.987 48 H 0.061 0.939 49 H 0.094 0.906 50 H 0.093 0.907 51 H 0.100 0.900 52 H 0.053 0.947 53 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.387 16.285 -10.384 19.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.100 4.100 3 C -0.199 4.199 4 C 0.034 3.966 5 H 0.119 0.881 6 N -0.357 5.357 7 C 0.071 3.929 8 N -0.267 5.267 9 C -0.066 4.066 10 C -0.149 4.149 11 C -0.149 4.149 12 C -0.001 4.001 13 H 0.055 0.945 14 C -0.548 4.548 15 H 0.050 0.950 16 C -0.179 4.179 17 N -0.588 5.588 18 Si 0.763 3.237 19 H -0.190 1.190 20 H -0.218 1.218 21 H -0.173 1.173 22 C -0.031 4.031 23 C 0.288 3.712 24 O -0.428 6.428 25 C 0.019 3.981 26 C -0.173 4.173 27 C -0.177 4.177 28 C -0.047 4.047 29 O -0.244 6.244 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.048 0.952 37 H 0.144 0.856 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.031 0.969 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.050 0.950 44 H 0.059 0.941 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.031 0.969 48 H 0.080 0.920 49 H 0.113 0.887 50 H 0.112 0.888 51 H 0.119 0.881 52 H 0.071 0.929 53 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.819 16.629 -9.818 19.686 hybrid contribution 0.423 -0.780 0.842 1.223 sum 4.242 15.850 -8.977 18.703 Atomic orbital electron populations 1.21958 0.94039 1.02054 1.02669 1.21163 0.96476 0.96882 0.95503 1.22007 1.02511 0.94786 1.00635 1.22517 0.90215 0.97857 0.85992 0.88107 1.50839 1.06443 1.54900 1.23471 1.22870 0.84067 0.94862 0.91079 1.62666 1.56658 1.03118 1.04229 1.22079 0.95074 0.99226 0.90229 1.21616 1.01756 0.94183 0.97393 1.21747 0.98910 0.95604 0.98612 1.19141 0.96147 0.92590 0.92245 0.94496 1.21129 1.07461 0.91548 1.34621 0.95016 1.25824 1.01517 0.94579 0.95941 1.70045 1.39655 0.99297 1.49756 0.85862 0.80263 0.77704 0.79844 1.19018 1.21846 1.17301 1.21785 0.96668 0.86399 0.98235 1.22543 0.83737 0.77988 0.86926 1.90646 1.69065 1.45647 1.37431 1.23240 0.94830 0.91731 0.88349 1.22670 0.97173 0.96053 1.01413 1.23130 0.97039 0.96334 1.01160 1.23962 0.82505 0.94820 1.03425 1.89025 1.19031 1.60094 1.56238 0.90745 0.92753 0.92607 0.88260 0.89947 0.91807 0.95180 0.85641 0.89158 0.89622 0.96927 0.90841 0.91204 0.95010 0.94064 0.92635 0.91543 0.96909 0.92044 0.88740 0.88800 0.88145 0.92874 0.85405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 8.64 71.98 0.62 -1.99 16 2 C -0.08 -1.54 2.93 -10.79 -0.03 -1.57 16 3 C -0.14 -2.80 8.13 71.98 0.59 -2.22 16 4 C 0.14 3.37 3.35 41.57 0.14 3.50 16 5 H 0.10 2.66 7.17 -2.39 -0.02 2.64 16 6 N -0.62 -17.36 1.05 -870.17 -0.92 -18.27 16 7 C 0.28 7.50 6.68 170.81 1.14 8.64 16 8 N -0.54 -17.81 4.90 -908.67 -4.45 -22.26 16 9 C 0.06 2.06 5.40 86.33 0.47 2.52 16 10 C -0.11 -3.85 6.09 30.65 0.19 -3.66 16 11 C -0.11 -4.72 5.27 30.67 0.16 -4.56 16 12 C 0.02 0.83 1.91 -11.49 -0.02 0.80 16 13 H 0.04 1.71 5.31 -2.38 -0.01 1.70 16 14 C -0.51 -28.18 8.87 25.60 0.23 -27.95 16 15 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 16 C 0.02 1.06 5.47 84.65 0.46 1.53 16 17 N -0.95 -57.95 13.96 21.45 0.30 -57.65 16 18 Si 0.94 43.88 27.00 68.60 1.85 45.73 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 21 H -0.25 -11.00 6.80 99.48 0.68 -10.32 16 22 C 0.10 3.78 3.49 86.33 0.30 4.08 16 23 C 0.50 16.38 7.56 84.24 0.64 17.01 16 24 O -0.55 -21.97 17.38 -3.03 -0.05 -22.02 16 25 C 0.06 1.62 1.39 -12.08 -0.02 1.60 16 26 C -0.13 -3.33 6.47 31.47 0.20 -3.13 16 27 C -0.14 -2.40 7.16 31.95 0.23 -2.18 16 28 C 0.03 0.50 7.72 72.68 0.56 1.07 16 29 O -0.33 -7.35 7.02 -148.98 -1.05 -8.39 16 30 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 0.99 5.44 -2.39 -0.01 0.98 16 33 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.08 1.72 5.22 -4.64 -0.02 1.69 16 35 H 0.06 1.05 8.03 -2.39 -0.02 1.03 16 36 H 0.03 0.70 6.72 -2.39 -0.02 0.68 16 37 H 0.13 2.84 5.38 -2.38 -0.01 2.83 16 38 H 0.09 2.29 7.70 -2.39 -0.02 2.27 16 39 H 0.09 2.47 7.91 -2.39 -0.02 2.45 16 40 H 0.01 0.48 7.14 -2.39 -0.02 0.46 16 41 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 43 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 46 H 0.07 2.56 7.96 -2.39 -0.02 2.54 16 47 H 0.01 0.53 6.99 -2.38 -0.02 0.52 16 48 H 0.06 1.79 7.95 -2.39 -0.02 1.77 16 49 H 0.09 2.32 7.71 -2.39 -0.02 2.30 16 50 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 51 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 52 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 53 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -69.13 391.41 2.38 -66.75 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.84 Total: 22.62 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 5.85 Total: -6.50 kcal Atomic # 7 Polarization: -93.12 SS G_CDS: -5.07 Total: -98.18 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -1.10 Total: -30.41 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.85 Total: 45.73 kcal Total: -69.13 2.38 -66.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853525303.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.404 kcal (2) G-P(sol) polarization free energy of solvation -69.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds