Wall clock time and date at job start Tue Mar 31 2020 21:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46849 * 2 1 4 4 C 1.52994 * 109.47219 * 120.00348 * 2 1 3 5 5 H 1.09004 * 112.45464 * 311.50245 * 4 2 1 6 6 N 1.46534 * 113.09981 * 181.88342 * 4 2 1 7 7 C 1.46498 * 134.65962 * 64.67035 * 6 4 2 8 8 N 1.46900 * 109.46987 * 100.95954 * 7 6 4 9 9 C 1.46851 * 111.00230 * 81.04271 * 8 7 6 10 10 C 1.53033 * 109.52226 * 174.16315 * 9 8 7 11 11 C 1.53118 * 109.28124 * 59.17745 * 10 9 8 12 12 C 1.53112 * 109.16211 * 302.34720 * 11 10 9 13 13 H 1.09001 * 109.50422 * 297.71417 * 12 11 10 14 14 C 1.50702 * 109.50593 * 177.59339 * 12 11 10 15 15 H 1.07995 * 120.00251 * 240.00124 * 14 12 11 16 16 C 1.37873 * 119.99743 * 59.99575 * 14 12 11 17 17 N 1.31518 * 120.00365 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 119.99950 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47082 * 60.00168 * 18 16 14 20 20 H 1.48501 * 109.47233 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47272 * 300.00187 * 18 16 14 22 22 C 1.46845 * 110.99608 * 316.83359 * 8 7 6 23 23 C 1.34809 * 90.67201 * 244.65807 * 6 4 2 24 24 O 1.21282 * 132.01767 * 179.97438 * 23 6 4 25 25 C 1.49721 * 95.96688 * 359.97438 * 23 6 4 26 26 C 1.53373 * 115.83222 * 115.35583 * 25 23 6 27 27 C 1.55021 * 103.80848 * 134.26106 * 26 25 23 28 28 C 1.55051 * 102.13014 * 20.85822 * 27 26 25 29 29 O 1.42889 * 116.24421 * 244.17822 * 25 23 6 30 30 H 1.08999 * 109.47290 * 299.99254 * 1 2 3 31 31 H 1.08995 * 109.47563 * 59.99945 * 1 2 3 32 32 H 1.09007 * 109.47128 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46866 * 240.00418 * 2 1 3 34 34 H 1.09000 * 109.46943 * 187.80045 * 3 2 1 35 35 H 1.08996 * 109.47021 * 307.79973 * 3 2 1 36 36 H 1.08997 * 109.46689 * 67.80034 * 3 2 1 37 37 H 1.09003 * 109.46682 * 220.95561 * 7 6 4 38 38 H 1.08997 * 109.47562 * 340.95414 * 7 6 4 39 39 H 1.09003 * 109.46110 * 294.18091 * 9 8 7 40 40 H 1.09005 * 109.46000 * 54.15463 * 9 8 7 41 41 H 1.09001 * 109.50116 * 179.12057 * 10 9 8 42 42 H 1.09002 * 109.50261 * 299.23630 * 10 9 8 43 43 H 1.09004 * 109.51950 * 62.24929 * 11 10 9 44 44 H 1.08995 * 109.52387 * 182.37576 * 11 10 9 45 45 H 0.96999 * 119.99925 * 180.02562 * 17 16 14 46 46 H 1.08997 * 109.46311 * 305.85319 * 22 8 7 47 47 H 1.09001 * 109.46534 * 65.82837 * 22 8 7 48 48 H 1.09000 * 110.55979 * 252.83695 * 26 25 23 49 49 H 1.08997 * 110.55612 * 15.53258 * 26 25 23 50 50 H 1.08999 * 110.86689 * 139.02167 * 27 26 25 51 51 H 1.09003 * 110.86572 * 262.49112 * 27 26 25 52 52 H 1.09001 * 110.59057 * 81.99288 * 28 27 26 53 53 H 1.09003 * 110.58467 * 204.76048 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.5494 -0.3755 2.1591 6 7 3.5017 -0.7294 1.3518 7 6 4.5278 0.3024 1.5212 8 7 4.9623 0.3352 2.9241 9 6 5.9441 -0.7225 3.1960 10 6 6.4809 -0.5680 4.6207 11 6 5.3175 -0.6587 5.6120 12 6 4.2864 0.4225 5.2770 13 1 4.7416 1.4066 5.3886 14 6 3.1099 0.3025 6.2112 15 1 2.1224 0.1176 5.8150 16 6 3.2944 0.4289 7.5717 17 7 4.4968 0.6546 8.0542 18 14 1.8363 0.2795 8.7297 19 1 1.2163 -1.0609 8.5747 20 1 2.2970 0.4533 10.1307 21 1 0.8362 1.3280 8.4044 22 6 3.8130 0.2393 3.8332 23 6 3.5189 -2.0716 1.2274 24 8 4.4280 -2.8744 1.2161 25 6 2.0355 -2.2358 1.1077 26 6 1.5292 -2.7781 -0.2346 27 6 0.4996 -3.8642 0.1697 28 6 0.1414 -3.4496 1.6202 29 8 1.3939 -2.9648 2.1559 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1210 1.4457 -0.1395 35 1 1.5672 1.9950 -0.8120 36 1 1.7949 1.9144 0.9515 37 1 5.3809 0.0748 0.8819 38 1 4.1160 1.2732 1.2455 39 1 5.4666 -1.6968 3.0914 40 1 6.7682 -0.6440 2.4868 41 1 7.1980 -1.3625 4.8275 42 1 6.9707 0.4005 4.7220 43 1 4.8519 -1.6415 5.5382 44 1 5.6896 -0.5070 6.6252 45 1 4.6266 0.7431 9.0114 46 1 3.0893 1.0163 3.5869 47 1 3.3456 -0.7395 3.7257 48 1 1.0461 -1.9878 -0.8091 49 1 2.3487 -3.2173 -0.8035 50 1 -0.3793 -3.8247 -0.4738 51 1 0.9517 -4.8557 0.1463 52 1 -0.6071 -2.6572 1.6186 53 1 -0.2137 -4.3096 2.1880 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853525304.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:31 Heat of formation + Delta-G solvation = -58.354726 kcal Electronic energy + Delta-G solvation = -32455.000768 eV Core-core repulsion = 28519.964110 eV Total energy + Delta-G solvation = -3935.036658 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.09943 -40.07466 -39.09727 -38.11409 -35.86779 -35.04718 -33.62891 -33.13790 -31.78136 -30.60319 -27.95946 -27.72263 -26.98459 -25.80875 -24.59361 -23.33169 -23.05332 -22.81175 -21.28974 -20.41831 -19.49861 -18.65540 -18.41732 -18.09081 -17.38193 -17.09738 -16.57109 -16.33616 -15.90066 -15.74459 -15.64474 -15.26331 -15.02165 -14.80650 -14.47193 -14.44869 -14.29775 -14.18471 -13.83098 -13.58428 -13.41575 -13.07381 -12.95242 -12.86107 -12.85391 -12.68290 -12.67416 -12.57215 -12.37219 -12.11849 -11.94532 -11.81156 -11.75183 -11.65096 -11.63675 -11.48562 -11.19173 -11.03200 -10.75188 -10.54034 -10.42491 -10.11455 -9.43486 -8.10236 -6.24332 1.11649 1.38368 1.40721 1.48008 1.80455 2.40648 2.63901 2.88836 3.01465 3.16639 3.23067 3.50256 3.80161 3.83557 3.96104 4.00421 4.06673 4.13535 4.19035 4.28618 4.31288 4.34894 4.41526 4.44611 4.54444 4.61332 4.63650 4.71803 4.75410 4.81243 4.84385 4.87682 4.89202 4.96185 4.99160 5.01262 5.05339 5.07027 5.15730 5.19896 5.25862 5.37848 5.42251 5.43877 5.46945 5.56745 5.59041 5.78669 5.86669 6.00282 6.10230 6.10870 6.38646 6.85754 7.00639 7.43039 8.94592 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011231 B = 0.004359 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.422065 B = 6422.082156 C = 7148.030774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.151 4.151 4 C 0.116 3.884 5 H 0.081 0.919 6 N -0.627 5.627 7 C 0.287 3.713 8 N -0.539 5.539 9 C 0.066 3.934 10 C -0.109 4.109 11 C -0.102 4.102 12 C 0.054 3.946 13 H 0.004 0.996 14 C -0.534 4.534 15 H 0.048 0.952 16 C 0.016 3.984 17 N -0.915 5.915 18 Si 0.953 3.047 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.266 1.266 22 C 0.099 3.901 23 C 0.505 3.495 24 O -0.552 6.552 25 C 0.062 3.938 26 C -0.129 4.129 27 C -0.142 4.142 28 C 0.031 3.969 29 O -0.375 6.375 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.047 0.953 37 H 0.096 0.904 38 H 0.130 0.870 39 H 0.009 0.991 40 H 0.084 0.916 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.005 0.995 44 H 0.062 0.938 45 H 0.261 0.739 46 H 0.061 0.939 47 H 0.006 0.994 48 H 0.130 0.870 49 H 0.080 0.920 50 H 0.123 0.877 51 H 0.074 0.926 52 H 0.086 0.914 53 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.531 -2.262 -22.561 25.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.208 4.208 4 C 0.012 3.988 5 H 0.099 0.901 6 N -0.366 5.366 7 C 0.080 3.920 8 N -0.264 5.264 9 C -0.062 4.062 10 C -0.147 4.147 11 C -0.140 4.140 12 C 0.035 3.965 13 H 0.022 0.978 14 C -0.573 4.573 15 H 0.066 0.934 16 C -0.183 4.183 17 N -0.554 5.554 18 Si 0.778 3.222 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.191 1.191 22 C -0.028 4.028 23 C 0.291 3.709 24 O -0.429 6.429 25 C 0.017 3.983 26 C -0.167 4.167 27 C -0.179 4.179 28 C -0.044 4.044 29 O -0.293 6.293 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.114 0.886 38 H 0.148 0.852 39 H 0.028 0.972 40 H 0.103 0.897 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.024 0.976 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.024 0.976 48 H 0.148 0.852 49 H 0.098 0.902 50 H 0.142 0.858 51 H 0.093 0.907 52 H 0.104 0.896 53 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.430 -2.040 -22.053 24.071 hybrid contribution -0.503 -0.956 1.328 1.712 sum -9.933 -2.996 -20.725 23.177 Atomic orbital electron populations 1.21920 0.92328 1.03075 1.03267 1.21440 0.97729 0.96705 0.95269 1.21941 1.01329 0.94950 1.02570 1.22883 0.80315 0.94686 1.00876 0.90121 1.51067 1.08776 1.06948 1.69790 1.22909 0.89062 0.91064 0.88997 1.62607 1.14150 1.45822 1.03861 1.22029 0.94968 0.91639 0.97527 1.21581 0.97805 1.01244 0.94093 1.21447 0.96077 0.96828 0.99635 1.18594 0.93735 0.93895 0.90278 0.97780 1.21397 0.94243 1.49358 0.92288 0.93369 1.25708 0.98249 0.94669 0.99709 1.70022 1.22476 1.49731 1.13170 0.85696 0.79893 0.78710 0.77888 1.20191 1.20693 1.19057 1.21744 0.90717 0.97451 0.92926 1.22698 0.90877 0.82991 0.74359 1.90627 1.47661 1.52710 1.51864 1.23123 0.90685 0.92802 0.91655 1.22899 1.00231 1.00529 0.93035 1.23203 1.00060 0.98652 0.96030 1.24083 0.85174 1.00171 0.94963 1.88901 1.35051 1.70496 1.34854 0.92852 0.89782 0.91230 0.88766 0.92496 0.90060 0.93380 0.88622 0.85217 0.97239 0.89745 0.91977 0.91894 0.97606 0.91942 0.93008 0.92071 0.97602 0.85182 0.90169 0.85840 0.90716 0.89550 0.87703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.69 71.98 0.63 -1.01 16 2 C -0.09 -1.40 2.22 -10.79 -0.02 -1.43 16 3 C -0.15 -2.26 8.20 71.98 0.59 -1.67 16 4 C 0.12 2.88 3.14 37.08 0.12 2.99 16 5 H 0.08 2.38 8.07 -2.38 -0.02 2.36 16 6 N -0.63 -18.81 1.89 -890.22 -1.68 -20.50 16 7 C 0.29 8.36 6.33 170.81 1.08 9.44 16 8 N -0.54 -20.53 4.89 -908.69 -4.44 -24.97 16 9 C 0.07 2.65 5.39 86.32 0.47 3.11 16 10 C -0.11 -4.75 6.09 30.64 0.19 -4.57 16 11 C -0.10 -5.38 5.02 30.67 0.15 -5.22 16 12 C 0.05 2.89 2.26 -11.49 -0.03 2.86 16 13 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 14 C -0.53 -30.93 8.56 25.60 0.22 -30.71 16 15 H 0.05 2.75 7.74 -2.91 -0.02 2.72 16 16 C 0.02 0.89 5.30 84.65 0.45 1.34 16 17 N -0.91 -54.76 11.35 21.45 0.24 -54.52 16 18 Si 0.95 45.04 29.54 68.60 2.03 47.07 16 19 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 22 C 0.10 4.44 3.90 86.33 0.34 4.78 16 23 C 0.51 17.71 8.07 79.74 0.64 18.35 16 24 O -0.55 -23.74 17.05 -3.03 -0.05 -23.80 16 25 C 0.06 1.65 1.71 -12.01 -0.02 1.63 16 26 C -0.13 -2.17 5.37 31.41 0.17 -2.01 16 27 C -0.14 -1.91 7.16 31.99 0.23 -1.68 16 28 C 0.03 0.58 7.73 72.68 0.56 1.14 16 29 O -0.37 -11.72 11.32 -148.98 -1.69 -13.41 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.63 6.27 -2.38 -0.01 0.61 16 33 H 0.09 1.21 6.29 -2.39 -0.02 1.19 16 34 H 0.06 0.89 5.73 -2.39 -0.01 0.88 16 35 H 0.08 0.88 8.13 -2.39 -0.02 0.87 16 36 H 0.05 0.87 8.13 -2.39 -0.02 0.85 16 37 H 0.10 2.54 7.77 -2.39 -0.02 2.52 16 38 H 0.13 3.09 5.56 -2.39 -0.01 3.08 16 39 H 0.01 0.43 6.57 -2.39 -0.02 0.41 16 40 H 0.08 2.91 7.92 -2.38 -0.02 2.89 16 41 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 43 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 44 H 0.06 3.64 6.15 -2.39 -0.01 3.63 16 45 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 46 H 0.06 2.63 8.12 -2.39 -0.02 2.61 16 47 H 0.01 0.28 7.15 -2.39 -0.02 0.26 16 48 H 0.13 1.38 4.07 -2.39 -0.01 1.37 16 49 H 0.08 1.47 7.98 -2.39 -0.02 1.45 16 50 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 52 H 0.09 1.25 7.80 -2.39 -0.02 1.23 16 53 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -76.08 393.56 1.05 -75.02 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.89 Total: 17.73 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 5.76 Total: -2.64 kcal Atomic # 7 Polarization: -94.11 SS G_CDS: -5.88 Total: -99.98 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -1.74 Total: -37.20 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -76.08 1.05 -75.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853525304.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.668 kcal (2) G-P(sol) polarization free energy of solvation -76.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds