Wall clock time and date at job start Tue Mar 31 2020 19:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46963 * 2 1 4 4 C 1.53003 * 109.47037 * 240.00857 * 2 1 3 5 5 C 1.50691 * 109.47441 * 120.00522 * 2 1 3 6 6 O 1.20780 * 120.00374 * 0.02562 * 5 2 1 7 7 C 1.49092 * 120.00057 * 180.02562 * 5 2 1 8 8 O 1.21368 * 120.00147 * 65.74685 * 7 5 2 9 9 N 1.34777 * 119.99847 * 245.74756 * 7 5 2 10 10 C 1.46922 * 120.63455 * 350.07877 * 9 7 5 11 11 C 1.53186 * 108.89526 * 126.33975 * 10 9 7 12 12 C 1.53359 * 109.14700 * 54.58293 * 11 10 9 13 13 C 1.53040 * 109.60282 * 298.70919 * 12 11 10 14 14 H 1.08997 * 109.50219 * 301.42446 * 13 12 11 15 15 C 1.53006 * 109.51914 * 181.34154 * 13 12 11 16 16 H 1.09001 * 110.63693 * 301.83325 * 15 13 12 17 17 C 1.55151 * 110.71842 * 65.17222 * 15 13 12 18 18 C 1.54916 * 101.57991 * 153.86503 * 17 15 13 19 19 N 1.47425 * 104.82929 * 322.98976 * 18 17 15 20 20 C 1.36944 * 125.64355 * 204.16665 * 19 18 17 21 21 H 1.08004 * 119.99535 * 159.05051 * 20 19 18 22 22 C 1.38804 * 119.99973 * 339.04591 * 20 19 18 23 23 N 1.31626 * 119.99763 * 166.14956 * 22 20 19 24 24 Si 1.86801 * 120.00275 * 346.15269 * 22 20 19 25 25 H 1.48500 * 109.47092 * 90.57406 * 24 22 20 26 26 H 1.48499 * 109.46979 * 210.57021 * 24 22 20 27 27 H 1.48494 * 109.46982 * 330.57628 * 24 22 20 28 28 C 1.47021 * 108.70583 * 24.12885 * 19 18 17 29 29 C 1.46928 * 120.62708 * 170.10180 * 9 7 5 30 30 H 1.08999 * 109.47091 * 299.99126 * 1 2 3 31 31 H 1.09003 * 109.47866 * 59.99578 * 1 2 3 32 32 H 1.09004 * 109.47125 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.46961 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47706 * 300.00550 * 3 2 1 35 35 H 1.08999 * 109.46504 * 60.00514 * 3 2 1 36 36 H 1.09004 * 109.47047 * 299.99534 * 4 2 1 37 37 H 1.08994 * 109.47322 * 59.99248 * 4 2 1 38 38 H 1.08998 * 109.47357 * 179.97438 * 4 2 1 39 39 H 1.09003 * 109.59069 * 246.20620 * 10 9 7 40 40 H 1.09011 * 109.58339 * 6.48363 * 10 9 7 41 41 H 1.09008 * 109.50035 * 174.65995 * 11 10 9 42 42 H 1.08998 * 109.50277 * 294.75768 * 11 10 9 43 43 H 1.08997 * 109.41582 * 178.67010 * 12 11 10 44 44 H 1.08992 * 109.42099 * 58.74942 * 12 11 10 45 45 H 1.09006 * 111.00217 * 271.93429 * 17 15 13 46 46 H 1.08993 * 111.00857 * 35.79129 * 17 15 13 47 47 H 1.09001 * 110.36285 * 204.15263 * 18 17 15 48 48 H 1.08994 * 110.46128 * 81.87559 * 18 17 15 49 49 H 0.96997 * 119.99998 * 180.02562 * 23 22 20 50 50 H 1.09000 * 109.87869 * 239.52361 * 28 19 18 51 51 H 1.08995 * 110.00949 * 118.43053 * 28 19 18 52 52 H 1.08988 * 109.59028 * 353.37791 * 29 9 7 53 53 H 1.09003 * 109.58396 * 113.65747 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 2.0323 -0.7105 1.2303 6 8 1.2476 -1.1700 2.0251 7 6 3.4982 -0.8462 1.4665 8 8 4.1733 0.1407 1.6744 9 7 4.0735 -2.0648 1.4490 10 6 3.2500 -3.2811 1.4161 11 6 3.6961 -4.1504 0.2363 12 6 5.2035 -4.4112 0.3452 13 6 5.9602 -3.0824 0.2831 14 1 5.7265 -2.5740 -0.6523 15 6 7.4653 -3.3472 0.3583 16 1 7.7158 -3.8833 1.2737 17 6 7.9479 -4.1307 -0.8909 18 6 9.4345 -3.7026 -0.9713 19 7 9.4413 -2.2848 -0.5673 20 6 10.3925 -1.3616 -0.9112 21 1 10.1620 -0.3073 -0.8686 22 6 11.6528 -1.7808 -1.3144 23 7 12.4722 -0.9332 -1.8999 24 14 12.1860 -3.5477 -1.0263 25 1 11.8201 -4.3736 -2.2050 26 1 13.6567 -3.5946 -0.8264 27 1 11.5049 -4.0796 0.1813 28 6 8.2574 -2.0260 0.2651 29 6 5.5363 -2.2022 1.4631 30 1 -0.3633 0.5137 0.8900 31 1 -0.3635 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1298 1.4425 0.0005 34 1 1.6766 1.9565 -0.8899 35 1 1.6766 1.9562 0.8900 36 1 1.6766 -1.7488 -1.2495 37 1 1.6765 -0.2072 -2.1392 38 1 3.1299 -0.7207 -1.2497 39 1 3.3778 -3.8343 2.3466 40 1 2.2015 -3.0093 1.2937 41 1 3.1572 -5.0977 0.2580 42 1 3.4837 -3.6319 -0.6986 43 1 5.5214 -5.0491 -0.4794 44 1 5.4180 -4.9073 1.2917 45 1 7.8588 -5.2060 -0.7361 46 1 7.4029 -3.8193 -1.7820 47 1 9.8050 -3.8084 -1.9909 48 1 10.0394 -4.2954 -0.2852 49 1 13.3528 -1.2262 -2.1820 50 1 7.6403 -1.2557 -0.1974 51 1 8.5642 -1.7067 1.2610 52 1 5.9966 -1.2188 1.3693 53 1 5.8508 -2.6651 2.3985 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961155249.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:41 Heat of formation + Delta-G solvation = -74.060880 kcal Electronic energy + Delta-G solvation = -31108.404248 eV Core-core repulsion = 27172.686521 eV Total energy + Delta-G solvation = -3935.717728 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.28641 -40.57128 -39.53971 -38.25882 -36.92838 -35.25418 -33.86481 -32.79431 -31.12516 -29.35025 -28.58603 -28.32239 -27.65679 -26.23338 -25.60413 -23.90032 -22.95305 -22.18022 -21.24449 -20.76195 -19.52107 -18.92192 -18.48211 -17.61400 -17.37201 -17.19529 -16.78277 -16.10918 -15.85607 -15.73173 -15.42873 -15.24223 -15.11500 -14.78583 -14.67155 -14.35140 -14.24046 -14.07035 -13.97828 -13.90517 -13.60631 -13.27034 -13.19884 -13.07142 -12.97198 -12.85574 -12.70189 -12.61020 -12.46639 -12.18772 -12.03045 -12.00923 -11.95216 -11.89537 -11.75118 -11.57995 -11.50934 -11.22740 -11.02539 -10.89974 -10.39893 -9.82568 -8.98066 -8.17341 -5.50150 0.17738 1.16810 1.29419 1.38321 1.46728 1.60250 2.40722 2.71686 3.10199 3.29924 3.39538 3.57101 3.69432 3.75745 3.77727 3.82291 4.00436 4.01096 4.12822 4.19288 4.23263 4.35448 4.45472 4.52130 4.54523 4.63342 4.64336 4.70478 4.73286 4.75442 4.81788 4.84047 4.85523 4.86871 4.87894 4.94414 4.97004 5.06106 5.11669 5.14363 5.16387 5.23109 5.24391 5.26416 5.34924 5.35484 5.43364 5.55806 5.69236 5.80201 6.07233 6.09906 6.67834 6.77684 7.53525 8.10416 9.03378 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018079 B = 0.002918 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.395662 B = 9592.999356 C =10345.812959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.101 4.101 3 C -0.142 4.142 4 C -0.139 4.139 5 C 0.376 3.624 6 O -0.433 6.433 7 C 0.475 3.525 8 O -0.550 6.550 9 N -0.590 5.590 10 C 0.095 3.905 11 C -0.128 4.128 12 C -0.111 4.111 13 C -0.074 4.074 14 H 0.066 0.934 15 C -0.078 4.078 16 H 0.095 0.905 17 C -0.106 4.106 18 C 0.083 3.917 19 N -0.631 5.631 20 C -0.236 4.236 21 H 0.048 0.952 22 C -0.047 4.047 23 N -0.969 5.969 24 Si 0.959 3.041 25 H -0.273 1.273 26 H -0.313 1.313 27 H -0.241 1.241 28 C 0.135 3.865 29 C 0.113 3.887 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.047 0.953 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.107 0.893 42 H 0.068 0.932 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.107 0.893 46 H 0.073 0.927 47 H 0.037 0.963 48 H 0.040 0.960 49 H 0.262 0.738 50 H 0.019 0.981 51 H 0.019 0.981 52 H 0.066 0.934 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.960 -9.876 3.525 30.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.102 4.102 3 C -0.199 4.199 4 C -0.196 4.196 5 C 0.247 3.753 6 O -0.303 6.303 7 C 0.260 3.740 8 O -0.429 6.429 9 N -0.323 5.323 10 C -0.026 4.026 11 C -0.166 4.166 12 C -0.148 4.148 13 C -0.094 4.094 14 H 0.084 0.916 15 C -0.097 4.097 16 H 0.113 0.887 17 C -0.144 4.144 18 C -0.041 4.041 19 N -0.358 5.358 20 C -0.365 4.365 21 H 0.066 0.934 22 C -0.240 4.240 23 N -0.617 5.617 24 Si 0.787 3.213 25 H -0.199 1.199 26 H -0.242 1.242 27 H -0.165 1.165 28 C 0.010 3.990 29 C -0.009 4.009 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.113 0.887 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.067 0.933 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.125 0.875 42 H 0.087 0.913 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.125 0.875 46 H 0.092 0.908 47 H 0.055 0.945 48 H 0.057 0.943 49 H 0.071 0.929 50 H 0.037 0.963 51 H 0.037 0.963 52 H 0.084 0.916 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -28.873 -9.529 4.015 30.669 hybrid contribution 1.436 0.374 0.159 1.493 sum -27.437 -9.155 4.174 29.223 Atomic orbital electron populations 1.21762 0.90108 1.03412 1.03437 1.21208 0.99139 0.97119 0.92760 1.21870 1.01478 0.92849 1.03681 1.21884 1.00907 1.01258 0.95596 1.24971 0.87547 0.75380 0.87432 1.90437 1.57815 1.38020 1.44035 1.21491 0.90831 0.83975 0.77670 1.90802 1.64352 1.38360 1.49386 1.48291 1.07812 1.05813 1.70389 1.22168 0.94506 0.84672 1.01256 1.22000 0.96441 1.00827 0.97312 1.21646 0.93975 0.95147 1.04043 1.21372 0.93056 0.97395 0.97574 0.91557 1.22108 0.93442 0.94669 0.99506 0.88723 1.22721 0.92945 1.00934 0.97772 1.22459 0.98660 0.85299 0.97698 1.44875 1.25764 1.06849 1.58301 1.18598 0.91048 0.88379 1.38435 0.93421 1.25838 0.95738 1.02470 0.99972 1.69928 1.09628 1.37400 1.44731 0.85925 0.75237 0.80252 0.79890 1.19936 1.24201 1.16541 1.21557 0.87583 0.97020 0.92837 1.21782 0.78351 1.01089 0.99680 0.92675 0.89095 0.91416 0.93021 0.88696 0.92582 0.90500 0.88654 0.93341 0.89181 0.89768 0.87495 0.91317 0.89696 0.90238 0.87502 0.90832 0.94478 0.94263 0.92920 0.96316 0.96259 0.91558 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 7.76 71.98 0.56 -0.98 16 2 C -0.10 -1.60 0.87 -52.93 -0.05 -1.64 16 3 C -0.14 -2.47 8.14 71.98 0.59 -1.88 16 4 C -0.14 -1.76 8.31 71.98 0.60 -1.17 16 5 C 0.38 8.02 4.53 28.60 0.13 8.15 16 6 O -0.43 -10.04 15.42 -1.51 -0.02 -10.06 16 7 C 0.47 12.37 6.65 87.16 0.58 12.95 16 8 O -0.55 -18.67 15.08 -3.30 -0.05 -18.72 16 9 N -0.59 -12.63 2.97 -820.93 -2.44 -15.07 16 10 C 0.10 1.33 6.28 86.36 0.54 1.88 16 11 C -0.13 -1.31 6.11 30.78 0.19 -1.12 16 12 C -0.11 -1.43 5.03 30.73 0.15 -1.28 16 13 C -0.07 -1.55 1.71 -10.71 -0.02 -1.57 16 14 H 0.07 1.57 8.13 -2.39 -0.02 1.55 16 15 C -0.08 -2.08 2.49 -9.61 -0.02 -2.11 16 16 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 17 C -0.11 -2.90 5.62 31.99 0.18 -2.72 16 18 C 0.08 3.36 4.66 86.86 0.41 3.77 16 19 N -0.63 -31.00 3.22 -691.98 -2.23 -33.22 16 20 C -0.24 -14.25 10.64 84.03 0.89 -13.35 16 21 H 0.05 3.19 8.06 -2.91 -0.02 3.17 16 22 C -0.05 -2.87 5.49 84.86 0.47 -2.41 16 23 N -0.97 -63.63 13.97 21.65 0.30 -63.32 16 24 Si 0.96 47.43 24.41 68.60 1.67 49.10 16 25 H -0.27 -12.72 6.84 99.48 0.68 -12.04 16 26 H -0.31 -15.77 7.11 99.48 0.71 -15.06 16 27 H -0.24 -10.95 5.52 99.48 0.55 -10.40 16 28 C 0.13 5.33 5.96 86.73 0.52 5.84 16 29 C 0.11 2.65 5.37 86.36 0.46 3.12 16 30 H 0.05 0.76 8.10 -2.39 -0.02 0.74 16 31 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.75 8.10 -2.38 -0.02 0.73 16 33 H 0.05 1.18 6.79 -2.39 -0.02 1.16 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 37 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.05 0.80 7.76 -2.39 -0.02 0.78 16 39 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.08 1.17 5.54 -2.38 -0.01 1.15 16 41 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 42 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.08 0.98 7.38 -2.39 -0.02 0.96 16 44 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.11 2.12 8.10 -2.38 -0.02 2.10 16 46 H 0.07 1.98 8.04 -2.39 -0.02 1.96 16 47 H 0.04 1.64 6.52 -2.39 -0.02 1.62 16 48 H 0.04 1.61 4.92 -2.39 -0.01 1.60 16 49 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 50 H 0.02 0.78 7.55 -2.39 -0.02 0.76 16 51 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 52 H 0.07 2.03 6.30 -2.39 -0.02 2.01 16 53 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -79.25 397.44 4.10 -75.16 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 0.69 Total: 10.68 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 6.17 Total: 5.46 kcal Atomic # 7 Polarization: -107.26 SS G_CDS: -4.36 Total: -111.62 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.07 Total: -28.78 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 1.67 Total: 49.10 kcal Total: -79.25 4.10 -75.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961155249.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.096 kcal (2) G-P(sol) polarization free energy of solvation -79.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds