Wall clock time and date at job start Tue Mar 31 2020 19:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47372 * 2 1 4 4 C 1.52998 * 109.47103 * 239.99828 * 2 1 3 5 5 C 1.50700 * 109.47019 * 119.99959 * 2 1 3 6 6 O 1.20786 * 120.00161 * 359.97438 * 5 2 1 7 7 C 1.49087 * 120.00299 * 179.97438 * 5 2 1 8 8 O 1.21371 * 119.99493 * 351.46072 * 7 5 2 9 9 N 1.34780 * 120.00578 * 171.45528 * 7 5 2 10 10 C 1.46926 * 120.62784 * 351.29758 * 9 7 5 11 11 C 1.53187 * 108.77514 * 233.58548 * 10 9 7 12 12 C 1.53042 * 109.31111 * 305.36559 * 11 10 9 13 13 C 1.53042 * 109.53984 * 61.36847 * 12 11 10 14 14 H 1.08991 * 109.49801 * 58.61713 * 13 12 11 15 15 C 1.52997 * 109.49950 * 178.68357 * 13 12 11 16 16 H 1.09006 * 110.91695 * 62.44319 * 15 13 12 17 17 C 1.55149 * 111.00620 * 186.34549 * 15 13 12 18 18 C 1.54335 * 103.02136 * 153.37811 * 17 15 13 19 19 N 1.47018 * 107.26796 * 338.14552 * 18 17 15 20 20 C 1.36937 * 125.65271 * 178.84903 * 19 18 17 21 21 H 1.07997 * 120.00117 * 179.69345 * 20 19 18 22 22 C 1.38816 * 119.99539 * 359.96358 * 20 19 18 23 23 N 1.31618 * 119.99861 * 359.72554 * 22 20 19 24 24 Si 1.86800 * 119.99869 * 179.72447 * 22 20 19 25 25 H 1.48504 * 109.47050 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.46913 * 119.99996 * 24 22 20 27 27 H 1.48492 * 109.47184 * 240.00108 * 24 22 20 28 28 C 1.47426 * 108.70022 * 358.58022 * 19 18 17 29 29 C 1.46927 * 120.63134 * 171.27494 * 9 7 5 30 30 H 1.08998 * 109.46770 * 299.99742 * 1 2 3 31 31 H 1.09001 * 109.47031 * 60.00022 * 1 2 3 32 32 H 1.08999 * 109.47253 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47385 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47025 * 299.99981 * 3 2 1 35 35 H 1.09004 * 109.47134 * 59.99695 * 3 2 1 36 36 H 1.09005 * 109.47436 * 299.99907 * 4 2 1 37 37 H 1.08997 * 109.47472 * 59.99900 * 4 2 1 38 38 H 1.09001 * 109.47326 * 180.02562 * 4 2 1 39 39 H 1.09000 * 109.58384 * 113.79603 * 10 9 7 40 40 H 1.08999 * 109.58568 * 353.37066 * 10 9 7 41 41 H 1.09002 * 109.49854 * 185.41531 * 11 10 9 42 42 H 1.09006 * 109.52559 * 65.32821 * 11 10 9 43 43 H 1.09001 * 109.46003 * 301.34181 * 12 11 10 44 44 H 1.09003 * 109.45006 * 181.37662 * 12 11 10 45 45 H 1.08993 * 110.72364 * 271.94117 * 17 15 13 46 46 H 1.09007 * 110.72018 * 35.21268 * 17 15 13 47 47 H 1.09003 * 109.99317 * 218.66506 * 18 17 15 48 48 H 1.09008 * 109.77626 * 97.49978 * 18 17 15 49 49 H 0.97002 * 119.99670 * 179.97438 * 23 22 20 50 50 H 1.09005 * 110.36605 * 143.19869 * 28 19 18 51 51 H 1.08998 * 110.36710 * 265.40869 * 28 19 18 52 52 H 1.08996 * 109.58691 * 6.62182 * 29 9 7 53 53 H 1.08998 * 109.58368 * 246.20370 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2474 -1.1690 2.0258 7 6 3.4981 -0.8472 1.4662 8 8 4.2845 -0.5272 0.5989 9 7 3.9498 -1.3259 2.6423 10 6 3.0290 -1.5380 3.7674 11 6 3.5730 -0.8011 4.9953 12 6 5.0091 -1.2567 5.2639 13 6 5.8900 -0.9080 4.0620 14 1 5.8563 0.1670 3.8859 15 6 7.3319 -1.3342 4.3448 16 1 7.3991 -2.4137 4.4809 17 6 8.2846 -0.8555 3.2178 18 6 9.6432 -0.7325 3.9397 19 7 9.3628 -0.5893 5.3758 20 6 10.3028 -0.4746 6.3649 21 1 9.9935 -0.3685 7.3942 22 6 11.6533 -0.4891 6.0440 23 7 12.0303 -0.6186 4.7896 24 14 12.9356 -0.3250 7.3924 25 1 12.2574 -0.1941 8.7071 26 1 13.8021 -1.5308 7.4008 27 1 13.7664 0.8799 7.1414 28 6 7.9020 -0.5831 5.5739 29 6 5.3723 -1.6462 2.8235 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 -1.7490 -1.2492 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7217 -1.2490 39 1 2.9557 -2.6039 3.9836 40 1 2.0444 -1.1461 3.5126 41 1 2.9512 -1.0286 5.8612 42 1 3.5606 0.2731 4.8107 43 1 5.0241 -2.3347 5.4247 44 1 5.3900 -0.7519 6.1518 45 1 8.3361 -1.5932 2.4170 46 1 7.9684 0.1134 2.8311 47 1 10.1797 0.1445 3.5774 48 1 10.2360 -1.6305 3.7654 49 1 12.9739 -0.6283 4.5653 50 1 7.6416 -1.1076 6.4933 51 1 7.5274 0.4401 5.6026 52 1 5.9336 -1.3257 1.9458 53 1 5.4900 -2.7208 2.9627 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961155259.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:44 Heat of formation + Delta-G solvation = -64.340430 kcal Electronic energy + Delta-G solvation = -30622.629951 eV Core-core repulsion = 26687.333733 eV Total energy + Delta-G solvation = -3935.296217 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.30037 -40.45443 -39.40817 -38.28218 -36.78385 -35.11392 -33.63313 -32.59380 -30.71925 -29.19328 -28.31435 -28.25002 -27.47257 -26.58298 -25.39559 -24.05026 -22.72105 -21.69815 -21.27231 -20.80001 -19.59796 -18.84810 -18.21875 -17.60377 -17.10627 -16.84225 -16.51800 -16.37596 -15.76740 -15.66732 -15.43854 -15.30901 -14.87800 -14.66456 -14.44621 -14.19057 -13.99435 -13.96183 -13.83530 -13.58975 -13.52356 -13.24256 -13.07443 -13.01651 -12.80214 -12.79067 -12.62533 -12.50059 -12.28732 -12.14437 -12.09768 -11.96518 -11.92459 -11.81783 -11.75191 -11.59977 -11.41069 -11.34388 -11.05853 -10.72724 -10.09385 -9.74828 -8.90064 -7.85460 -5.21272 -0.16850 1.44352 1.45858 1.54086 1.56311 1.83735 2.48893 2.82309 3.32542 3.42755 3.55575 3.68198 3.81637 3.83854 3.87717 3.89813 4.04494 4.17379 4.18073 4.26945 4.32753 4.40922 4.51993 4.60023 4.67342 4.70241 4.72960 4.74049 4.81805 4.84174 4.87525 4.90627 4.91870 4.93525 4.93878 5.01304 5.04582 5.10318 5.12307 5.22443 5.25623 5.31172 5.32156 5.38351 5.45091 5.46057 5.52963 5.66800 5.76909 5.86187 6.19630 6.20602 6.79245 7.09743 7.77962 8.43156 9.25416 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.025259 B = 0.002371 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.266709 B =11808.931359 C =12468.810492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.094 4.094 3 C -0.141 4.141 4 C -0.143 4.143 5 C 0.367 3.633 6 O -0.417 6.417 7 C 0.467 3.533 8 O -0.531 6.531 9 N -0.585 5.585 10 C 0.074 3.926 11 C -0.128 4.128 12 C -0.115 4.115 13 C -0.073 4.073 14 H 0.062 0.938 15 C -0.076 4.076 16 H 0.080 0.920 17 C -0.126 4.126 18 C 0.185 3.815 19 N -0.630 5.630 20 C -0.240 4.240 21 H 0.084 0.916 22 C -0.072 4.072 23 N -0.954 5.954 24 Si 0.980 3.020 25 H -0.263 1.263 26 H -0.291 1.291 27 H -0.293 1.293 28 C 0.142 3.858 29 C 0.114 3.886 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.125 0.875 41 H 0.099 0.901 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.077 0.923 46 H 0.060 0.940 47 H -0.001 1.001 48 H 0.010 0.990 49 H 0.246 0.754 50 H 0.045 0.955 51 H 0.018 0.982 52 H 0.081 0.919 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.939 -0.849 -8.450 29.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.095 4.095 3 C -0.198 4.198 4 C -0.200 4.200 5 C 0.238 3.762 6 O -0.288 6.288 7 C 0.252 3.748 8 O -0.408 6.408 9 N -0.318 5.318 10 C -0.046 4.046 11 C -0.166 4.166 12 C -0.153 4.153 13 C -0.093 4.093 14 H 0.080 0.920 15 C -0.096 4.096 16 H 0.098 0.902 17 C -0.164 4.164 18 C 0.060 3.940 19 N -0.357 5.357 20 C -0.369 4.369 21 H 0.102 0.898 22 C -0.264 4.264 23 N -0.603 5.603 24 Si 0.808 3.192 25 H -0.188 1.188 26 H -0.218 1.218 27 H -0.220 1.220 28 C 0.017 3.983 29 C -0.008 4.008 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.142 0.858 41 H 0.118 0.882 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.018 0.982 48 H 0.028 0.972 49 H 0.055 0.945 50 H 0.064 0.936 51 H 0.035 0.965 52 H 0.099 0.901 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -27.762 -0.936 -8.425 29.027 hybrid contribution 1.732 0.146 0.637 1.852 sum -26.030 -0.790 -7.787 27.181 Atomic orbital electron populations 1.21782 0.90594 1.02988 1.03521 1.21047 0.98423 0.97223 0.92820 1.21884 1.01716 0.92405 1.03836 1.21926 1.02386 1.00066 0.95641 1.25131 0.87666 0.76005 0.87364 1.90195 1.58665 1.37131 1.42793 1.21278 0.91569 0.79002 0.82968 1.90719 1.57705 1.48092 1.44328 1.48393 1.09874 1.61255 1.12277 1.22817 0.94488 1.02216 0.85101 1.21923 0.96377 1.00083 0.98216 1.21612 0.94442 1.02201 0.97044 1.21285 0.92977 0.99683 0.95321 0.91982 1.22172 0.92957 0.99784 0.94675 0.90171 1.22773 0.95229 1.00791 0.97614 1.20878 0.92853 0.97139 0.83111 1.44858 1.01496 1.86040 1.03277 1.19530 0.86831 1.41953 0.88600 0.89827 1.25714 0.99138 1.02787 0.98773 1.70223 1.14551 1.58133 1.17434 0.84978 0.78804 0.76701 0.78675 1.18753 1.21847 1.22036 1.21697 0.83111 0.96695 0.96814 1.21752 0.80037 1.00123 0.98837 0.92075 0.89453 0.92165 0.92546 0.89013 0.92088 0.92328 0.89232 0.91782 0.89866 0.85836 0.88224 0.92293 0.90670 0.91439 0.90462 0.92112 0.98248 0.97178 0.94493 0.93629 0.96455 0.90057 0.89741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 7.76 71.98 0.56 -0.89 16 2 C -0.09 -1.38 0.76 -52.93 -0.04 -1.42 16 3 C -0.14 -2.00 8.29 71.98 0.60 -1.40 16 4 C -0.14 -2.04 8.29 71.98 0.60 -1.44 16 5 C 0.37 7.00 5.86 28.60 0.17 7.17 16 6 O -0.42 -8.13 12.85 -1.53 -0.02 -8.15 16 7 C 0.47 11.03 7.36 87.16 0.64 11.67 16 8 O -0.53 -15.06 12.91 -3.31 -0.04 -15.11 16 9 N -0.58 -13.01 2.97 -820.95 -2.44 -15.45 16 10 C 0.07 1.31 5.96 86.36 0.51 1.83 16 11 C -0.13 -2.16 6.08 30.67 0.19 -1.97 16 12 C -0.12 -2.40 4.98 30.62 0.15 -2.25 16 13 C -0.07 -1.88 1.85 -10.72 -0.02 -1.90 16 14 H 0.06 1.78 8.11 -2.39 -0.02 1.76 16 15 C -0.08 -2.51 2.57 -9.41 -0.02 -2.53 16 16 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 17 C -0.13 -4.80 5.70 31.78 0.18 -4.62 16 18 C 0.19 9.60 5.37 86.73 0.47 10.07 16 19 N -0.63 -33.46 3.39 -691.95 -2.35 -35.81 16 20 C -0.24 -13.82 10.28 84.03 0.86 -12.96 16 21 H 0.08 4.57 7.83 -2.91 -0.02 4.55 16 22 C -0.07 -4.20 5.49 84.86 0.47 -3.73 16 23 N -0.95 -59.43 10.31 21.65 0.22 -59.21 16 24 Si 0.98 46.82 29.55 68.60 2.03 48.84 16 25 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 26 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 27 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 28 C 0.14 5.77 5.65 86.86 0.49 6.26 16 29 C 0.11 2.77 5.49 86.36 0.47 3.24 16 30 H 0.06 0.70 8.10 -2.39 -0.02 0.68 16 31 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.70 8.10 -2.39 -0.02 0.68 16 33 H 0.06 1.06 6.73 -2.39 -0.02 1.05 16 34 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.06 1.22 6.17 -2.39 -0.01 1.20 16 39 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.12 2.17 4.39 -41.03 -0.18 1.99 16 41 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.06 1.08 8.14 -2.38 -0.02 1.07 16 43 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.07 1.51 7.21 -2.39 -0.02 1.49 16 45 H 0.08 2.65 8.14 -2.39 -0.02 2.64 16 46 H 0.06 2.26 8.01 -2.38 -0.02 2.24 16 47 H 0.00 -0.04 7.51 -2.39 -0.02 -0.06 16 48 H 0.01 0.58 7.38 -2.38 -0.02 0.56 16 49 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 50 H 0.05 1.77 8.02 -2.38 -0.02 1.75 16 51 H 0.02 0.72 8.04 -2.39 -0.02 0.70 16 52 H 0.08 2.26 6.57 -2.39 -0.02 2.25 16 53 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -70.70 399.23 4.37 -66.33 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.70 Total: 13.43 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 6.27 Total: 5.12 kcal Atomic # 7 Polarization: -105.91 SS G_CDS: -4.57 Total: -110.47 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.06 Total: -23.25 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.84 kcal Total: -70.70 4.37 -66.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961155259.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.993 kcal (2) G-P(sol) polarization free energy of solvation -70.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds