Wall clock time and date at job start Tue Mar 31 2020 19:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47445 * 2 1 4 4 C 1.53000 * 109.47059 * 239.99986 * 2 1 3 5 5 C 1.50703 * 109.46936 * 120.00178 * 2 1 3 6 6 O 1.20772 * 120.00134 * 0.02562 * 5 2 1 7 7 C 1.49090 * 119.99719 * 180.27235 * 5 2 1 8 8 O 1.21373 * 120.00410 * 8.24614 * 7 5 2 9 9 N 1.34779 * 120.00177 * 188.24159 * 7 5 2 10 10 C 1.46923 * 120.62699 * 8.74718 * 9 7 5 11 11 C 1.53194 * 108.77731 * 126.36546 * 10 9 7 12 12 C 1.53050 * 109.30905 * 54.63501 * 11 10 9 13 13 C 1.53043 * 109.53634 * 298.63383 * 12 11 10 14 14 H 1.08997 * 109.49768 * 301.38528 * 13 12 11 15 15 C 1.52999 * 109.49491 * 181.31443 * 13 12 11 16 16 H 1.08993 * 110.64530 * 300.70345 * 15 13 12 17 17 C 1.55159 * 110.71834 * 177.55895 * 15 13 12 18 18 C 1.54908 * 101.58215 * 206.13785 * 17 15 13 19 19 N 1.47425 * 104.83383 * 37.00955 * 18 17 15 20 20 C 1.36934 * 125.65228 * 155.90928 * 19 18 17 21 21 H 1.07997 * 120.00401 * 179.97438 * 20 19 18 22 22 C 1.38813 * 119.99570 * 359.97438 * 20 19 18 23 23 N 1.31620 * 120.00305 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99737 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47232 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47142 * 120.00274 * 24 22 20 27 27 H 1.48506 * 109.47257 * 240.00127 * 24 22 20 28 28 C 1.47324 * 108.73477 * 335.71554 * 19 18 17 29 29 C 1.46927 * 120.63189 * 188.46624 * 9 7 5 30 30 H 1.08996 * 109.47069 * 299.99942 * 1 2 3 31 31 H 1.08997 * 109.47463 * 59.99801 * 1 2 3 32 32 H 1.09006 * 109.47280 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47497 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47292 * 300.00182 * 3 2 1 35 35 H 1.09005 * 109.47116 * 60.00006 * 3 2 1 36 36 H 1.08998 * 109.47375 * 300.00059 * 4 2 1 37 37 H 1.09004 * 109.47397 * 60.00113 * 4 2 1 38 38 H 1.09003 * 109.47521 * 180.02562 * 4 2 1 39 39 H 1.08998 * 109.59109 * 246.15577 * 10 9 7 40 40 H 1.09005 * 109.58684 * 6.43717 * 10 9 7 41 41 H 1.08995 * 109.49701 * 174.58380 * 11 10 9 42 42 H 1.09000 * 109.50134 * 294.68625 * 11 10 9 43 43 H 1.09001 * 109.45911 * 58.65785 * 12 11 10 44 44 H 1.09003 * 109.45711 * 178.62717 * 12 11 10 45 45 H 1.08994 * 111.00324 * 324.21066 * 17 15 13 46 46 H 1.09001 * 110.99957 * 88.02595 * 17 15 13 47 47 H 1.08994 * 110.37028 * 155.84772 * 18 17 15 48 48 H 1.09000 * 110.36669 * 278.17772 * 18 17 15 49 49 H 0.96998 * 120.00374 * 180.02562 * 23 22 20 50 50 H 1.08996 * 110.06447 * 241.86846 * 28 19 18 51 51 H 1.09009 * 109.84743 * 120.61148 * 28 19 18 52 52 H 1.08994 * 109.58503 * 353.41846 * 29 9 7 53 53 H 1.09004 * 109.58475 * 113.84749 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0322 -0.7105 1.2305 6 8 1.2474 -1.1699 2.0252 7 6 3.4980 -0.8414 1.4695 8 8 4.2841 -0.2507 0.7579 9 7 3.9503 -1.6155 2.4757 10 6 3.0308 -2.4843 3.2231 11 6 3.5788 -3.9147 3.2040 12 6 5.0143 -3.9139 3.7350 13 6 5.8940 -3.0475 2.8308 14 1 5.8628 -3.4356 1.8128 15 6 7.3352 -3.0737 3.3436 16 1 7.3862 -2.6993 4.3660 17 6 8.2647 -2.2527 2.4112 18 6 9.6338 -2.9339 2.6586 19 7 9.3202 -4.3660 2.8139 20 6 10.1874 -5.4018 2.5901 21 1 9.8599 -6.4209 2.7332 22 6 11.4877 -5.1418 2.1794 23 7 11.8870 -3.8998 2.0055 24 14 12.6710 -6.5548 1.8747 25 1 11.9822 -7.8433 2.1400 26 1 13.1296 -6.5207 0.4627 27 1 13.8419 -6.4236 2.7788 28 6 7.9206 -4.4989 3.2544 29 6 5.3731 -1.6114 2.8421 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2074 -2.1393 38 1 3.1299 -0.7217 -1.2491 39 1 2.9549 -2.1359 4.2531 40 1 2.0461 -2.4617 2.7563 41 1 2.9579 -4.5506 3.8349 42 1 3.5691 -4.2944 2.1823 43 1 5.0265 -3.5111 4.7478 44 1 5.3981 -4.9341 3.7453 45 1 7.9607 -2.3535 1.3694 46 1 8.2896 -1.2045 2.7092 47 1 10.2936 -2.7805 1.8047 48 1 10.0921 -2.5452 3.5679 49 1 12.7955 -3.7182 1.7181 50 1 7.8803 -4.9782 4.2325 51 1 7.3582 -5.0859 2.5281 52 1 5.9340 -1.0151 2.1225 53 1 5.4921 -1.1903 3.8405 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961155268.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:48 Heat of formation + Delta-G solvation = -62.539539 kcal Electronic energy + Delta-G solvation = -30693.893185 eV Core-core repulsion = 26758.675060 eV Total energy + Delta-G solvation = -3935.218125 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.31275 -40.48294 -39.40995 -38.27356 -36.79103 -35.13761 -33.63334 -32.60445 -30.69615 -29.20692 -28.32124 -28.25694 -27.47658 -26.58702 -25.39878 -24.04571 -22.72808 -21.77737 -21.23127 -20.74777 -19.60367 -18.87770 -18.23016 -17.61469 -17.14568 -16.88479 -16.52724 -16.41587 -15.69311 -15.62846 -15.44526 -15.31272 -14.91477 -14.67333 -14.52001 -14.22188 -14.13291 -13.92811 -13.66952 -13.52711 -13.41176 -13.26200 -13.07857 -13.02023 -12.83707 -12.77099 -12.65192 -12.55818 -12.38793 -12.11403 -12.09339 -11.96179 -11.92992 -11.84861 -11.72956 -11.60354 -11.38014 -11.36319 -11.02598 -10.75695 -10.09610 -9.76103 -8.88617 -7.77963 -5.22411 -0.17564 1.44672 1.46114 1.53248 1.56496 1.83253 2.48632 2.81753 3.31115 3.42163 3.61002 3.65765 3.76113 3.83202 3.87028 3.91050 4.03049 4.17069 4.18767 4.26415 4.33376 4.39660 4.53970 4.59862 4.66711 4.70015 4.72292 4.72523 4.80995 4.83376 4.86024 4.88023 4.91804 4.93141 4.93407 5.00764 5.05931 5.10138 5.14625 5.21876 5.24340 5.30780 5.31385 5.37440 5.44058 5.45757 5.51980 5.65724 5.81909 5.85483 6.19886 6.30760 6.78746 7.10377 7.78470 8.42957 9.24242 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020680 B = 0.002475 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.622903 B =11309.014950 C =11882.886024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.094 4.094 3 C -0.143 4.143 4 C -0.142 4.142 5 C 0.367 3.633 6 O -0.416 6.416 7 C 0.466 3.534 8 O -0.531 6.531 9 N -0.585 5.585 10 C 0.074 3.926 11 C -0.129 4.129 12 C -0.115 4.115 13 C -0.075 4.075 14 H 0.054 0.946 15 C -0.075 4.075 16 H 0.086 0.914 17 C -0.125 4.125 18 C 0.154 3.846 19 N -0.630 5.630 20 C -0.237 4.237 21 H 0.080 0.920 22 C -0.071 4.071 23 N -0.951 5.951 24 Si 0.981 3.019 25 H -0.266 1.266 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.141 3.859 29 C 0.115 3.885 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.054 0.946 39 H 0.085 0.915 40 H 0.124 0.876 41 H 0.100 0.900 42 H 0.055 0.945 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.052 0.948 46 H 0.080 0.920 47 H 0.067 0.933 48 H -0.013 1.013 49 H 0.246 0.754 50 H 0.024 0.976 51 H 0.022 0.978 52 H 0.080 0.920 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.112 8.321 -0.608 28.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.095 4.095 3 C -0.200 4.200 4 C -0.199 4.199 5 C 0.239 3.761 6 O -0.287 6.287 7 C 0.251 3.749 8 O -0.409 6.409 9 N -0.318 5.318 10 C -0.046 4.046 11 C -0.167 4.167 12 C -0.152 4.152 13 C -0.094 4.094 14 H 0.073 0.927 15 C -0.095 4.095 16 H 0.105 0.895 17 C -0.163 4.163 18 C 0.029 3.971 19 N -0.356 5.356 20 C -0.366 4.366 21 H 0.098 0.902 22 C -0.263 4.263 23 N -0.601 5.601 24 Si 0.809 3.191 25 H -0.190 1.190 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.016 3.984 29 C -0.007 4.007 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.104 0.896 40 H 0.142 0.858 41 H 0.119 0.881 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.099 0.901 47 H 0.085 0.915 48 H 0.005 0.995 49 H 0.056 0.944 50 H 0.042 0.958 51 H 0.040 0.960 52 H 0.098 0.902 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -26.953 8.324 -0.584 28.215 hybrid contribution 1.566 -0.784 -0.063 1.753 sum -25.387 7.539 -0.647 26.490 Atomic orbital electron populations 1.21779 0.90536 1.03036 1.03510 1.21046 0.98459 0.97438 0.92562 1.21927 1.02376 0.92142 1.03566 1.21886 1.01667 1.00318 0.96009 1.25118 0.87629 0.75972 0.87403 1.90186 1.58632 1.35837 1.44066 1.21296 0.91599 0.80956 0.81035 1.90722 1.57744 1.46836 1.45585 1.48396 1.09890 1.40862 1.32670 1.22824 0.94482 0.89223 0.98087 1.21925 0.96444 0.96285 1.02007 1.21615 0.94395 1.00010 0.99219 1.21245 0.93250 0.95349 0.99571 0.92704 1.22032 0.93198 0.94716 0.99532 0.89542 1.22879 0.95811 0.98935 0.98707 1.21686 0.94225 0.82621 0.98575 1.44948 1.08821 1.02789 1.79051 1.19508 0.92079 0.87551 1.37505 0.90195 1.25675 0.99032 0.99141 1.02497 1.70086 1.17131 1.18444 1.54414 0.84966 0.78529 0.78646 0.76931 1.19023 1.21825 1.21832 1.21503 0.84677 0.95936 0.96248 1.21662 0.80017 0.97167 1.01841 0.92093 0.89444 0.92091 0.91817 0.89227 0.92242 0.92132 0.88980 0.92650 0.89638 0.85843 0.88116 0.92618 0.90274 0.91662 0.92914 0.90105 0.91458 0.99499 0.94393 0.95794 0.95965 0.90189 0.89395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 7.76 71.98 0.56 -0.94 16 2 C -0.09 -1.43 0.76 -52.93 -0.04 -1.47 16 3 C -0.14 -2.10 8.28 71.98 0.60 -1.50 16 4 C -0.14 -2.12 8.29 71.98 0.60 -1.52 16 5 C 0.37 7.20 5.86 28.60 0.17 7.37 16 6 O -0.42 -8.26 12.85 -1.48 -0.02 -8.28 16 7 C 0.47 11.35 7.36 87.16 0.64 11.99 16 8 O -0.53 -15.57 12.91 -3.32 -0.04 -15.61 16 9 N -0.58 -13.35 2.98 -821.74 -2.45 -15.80 16 10 C 0.07 1.34 5.96 86.36 0.52 1.85 16 11 C -0.13 -2.25 6.08 30.68 0.19 -2.07 16 12 C -0.11 -2.44 5.01 30.63 0.15 -2.29 16 13 C -0.07 -1.99 1.70 -10.86 -0.02 -2.01 16 14 H 0.05 1.70 8.12 -2.39 -0.02 1.68 16 15 C -0.08 -2.50 2.49 -9.60 -0.02 -2.52 16 16 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 17 C -0.12 -4.83 5.61 31.99 0.18 -4.65 16 18 C 0.15 7.91 5.89 86.85 0.51 8.43 16 19 N -0.63 -33.64 3.40 -691.22 -2.35 -36.00 16 20 C -0.24 -13.74 10.28 84.03 0.86 -12.87 16 21 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 22 C -0.07 -4.17 5.49 84.86 0.47 -3.70 16 23 N -0.95 -58.47 10.09 21.65 0.22 -58.26 16 24 Si 0.98 46.78 29.55 68.60 2.03 48.81 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 26 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 27 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 28 C 0.14 5.87 5.91 86.67 0.51 6.38 16 29 C 0.12 2.84 5.41 86.22 0.47 3.30 16 30 H 0.06 0.72 8.10 -2.39 -0.02 0.70 16 31 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.72 8.10 -2.38 -0.02 0.70 16 33 H 0.06 1.25 6.16 -2.39 -0.01 1.23 16 34 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.05 1.10 6.73 -2.39 -0.02 1.08 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.12 2.22 4.38 -41.69 -0.18 2.04 16 41 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.06 1.51 7.27 -2.39 -0.02 1.49 16 45 H 0.05 2.11 8.05 -2.39 -0.02 2.09 16 46 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 47 H 0.07 3.97 5.87 -2.39 -0.01 3.96 16 48 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 49 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 50 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.02 0.93 7.68 -2.38 -0.02 0.91 16 52 H 0.08 2.30 6.43 -2.39 -0.02 2.28 16 53 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 Total: -1.00 -70.01 398.25 4.42 -65.59 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.70 Total: 15.76 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 6.33 Total: 3.78 kcal Atomic # 7 Polarization: -105.47 SS G_CDS: -4.58 Total: -110.05 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.06 Total: -23.89 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -70.01 4.42 -65.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961155268.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.055 kcal (2) G-P(sol) polarization free energy of solvation -70.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds