Wall clock time and date at job start Tue Mar 31 2020 19:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47016 * 2 1 4 4 C 1.53003 * 109.46828 * 240.00214 * 2 1 3 5 5 C 1.50698 * 109.47055 * 120.00229 * 2 1 3 6 6 O 1.20777 * 119.99977 * 359.97438 * 5 2 1 7 7 C 1.49090 * 119.99876 * 180.02562 * 5 2 1 8 8 O 1.21367 * 119.99667 * 351.45616 * 7 5 2 9 9 N 1.34768 * 120.00072 * 171.45834 * 7 5 2 10 10 C 1.46930 * 120.63172 * 351.28784 * 9 7 5 11 11 C 1.53186 * 108.77363 * 233.60986 * 10 9 7 12 12 C 1.53039 * 109.31483 * 305.36286 * 11 10 9 13 13 C 1.53044 * 109.54082 * 61.36771 * 12 11 10 14 14 H 1.09004 * 109.49544 * 58.61700 * 13 12 11 15 15 C 1.52990 * 109.49961 * 178.68564 * 13 12 11 16 16 H 1.08998 * 110.89429 * 63.81613 * 15 13 12 17 17 C 1.55164 * 111.00409 * 299.93297 * 15 13 12 18 18 C 1.54319 * 103.10139 * 206.29969 * 17 15 13 19 19 N 1.47487 * 107.03911 * 22.23880 * 18 17 15 20 20 C 1.36935 * 125.59571 * 181.00234 * 19 18 17 21 21 H 1.08004 * 119.99994 * 180.02562 * 20 19 18 22 22 C 1.38811 * 119.99832 * 0.02844 * 20 19 18 23 23 N 1.31612 * 120.00441 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99735 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47409 * 59.99979 * 24 22 20 26 26 H 1.48499 * 109.47144 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46959 * 299.99459 * 24 22 20 28 28 C 1.47432 * 108.75662 * 1.02633 * 19 18 17 29 29 C 1.46936 * 120.60522 * 171.30829 * 9 7 5 30 30 H 1.09002 * 109.46870 * 299.99549 * 1 2 3 31 31 H 1.08996 * 109.47154 * 60.00274 * 1 2 3 32 32 H 1.09005 * 109.46883 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47036 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47243 * 300.00269 * 3 2 1 35 35 H 1.08999 * 109.46694 * 60.00017 * 3 2 1 36 36 H 1.08993 * 109.47317 * 299.99659 * 4 2 1 37 37 H 1.09000 * 109.47163 * 59.99894 * 4 2 1 38 38 H 1.09002 * 109.46951 * 179.97438 * 4 2 1 39 39 H 1.09004 * 109.58675 * 113.82186 * 10 9 7 40 40 H 1.08993 * 109.58583 * 353.39819 * 10 9 7 41 41 H 1.09006 * 109.49818 * 185.41221 * 11 10 9 42 42 H 1.09003 * 109.52521 * 65.33292 * 11 10 9 43 43 H 1.08996 * 109.46273 * 301.34394 * 12 11 10 44 44 H 1.09006 * 109.45436 * 181.38273 * 12 11 10 45 45 H 1.09002 * 110.71934 * 324.74947 * 17 15 13 46 46 H 1.08993 * 110.71605 * 87.84895 * 17 15 13 47 47 H 1.09005 * 109.88480 * 141.69698 * 18 17 15 48 48 H 1.09003 * 109.88191 * 262.86474 * 18 17 15 49 49 H 0.97000 * 120.00389 * 180.02562 * 23 22 20 50 50 H 1.08998 * 110.36439 * 217.05117 * 28 19 18 51 51 H 1.09004 * 110.36223 * 94.72920 * 28 19 18 52 52 H 1.09004 * 109.61588 * 6.62376 * 29 9 7 53 53 H 1.09003 * 109.56508 * 246.19449 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 8 1.2475 -1.1691 2.0256 7 6 3.4982 -0.8462 1.4666 8 8 4.2847 -0.5254 0.5998 9 7 3.9497 -1.3250 2.6426 10 6 3.0287 -1.5381 3.7674 11 6 3.5715 -0.8008 4.9956 12 6 5.0079 -1.2550 5.2648 13 6 5.8890 -0.9055 4.0632 14 1 5.8543 0.1697 3.8871 15 6 7.3311 -1.3304 4.3466 16 1 7.4028 -2.4122 4.4587 17 6 7.8892 -0.6034 5.5987 18 6 9.4113 -0.5877 5.3446 19 7 9.6083 -0.7395 3.8908 20 6 10.8183 -0.7939 3.2519 21 1 10.8575 -0.9068 2.1785 22 6 11.9943 -0.7041 3.9838 23 7 11.9465 -0.5662 5.2918 24 14 13.6448 -0.7777 3.1121 25 1 13.7413 0.3404 2.1396 26 1 14.7377 -0.6614 4.1108 27 1 13.7677 -2.0713 2.3931 28 6 8.2883 -0.8224 3.2396 29 6 5.3727 -1.6434 2.8239 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9562 0.8900 36 1 1.6767 -1.7488 -1.2493 37 1 1.6766 -0.2074 -2.1393 38 1 3.1300 -0.7208 -1.2496 39 1 2.9563 -2.6040 3.9836 40 1 2.0438 -1.1472 3.5123 41 1 2.9495 -1.0289 5.8612 42 1 3.5581 0.2734 4.8110 43 1 5.0239 -2.3329 5.4254 44 1 5.3880 -0.7499 6.1528 45 1 7.4982 0.4121 5.6612 46 1 7.6553 -1.1618 6.5050 47 1 9.8337 0.3589 5.6817 48 1 9.8838 -1.4160 5.8726 49 1 12.7683 -0.5031 5.8033 50 1 8.3181 -1.5290 2.4102 51 1 7.9755 0.1615 2.8898 52 1 5.9342 -1.3217 1.9468 53 1 5.4915 -2.7180 2.9626 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961155278.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:51 Heat of formation + Delta-G solvation = -63.988068 kcal Electronic energy + Delta-G solvation = -30686.505533 eV Core-core repulsion = 26751.224595 eV Total energy + Delta-G solvation = -3935.280938 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.30685 -40.44981 -39.40355 -38.27187 -36.78936 -35.12483 -33.60567 -32.53328 -30.90377 -28.87080 -28.40700 -28.26113 -27.67604 -26.43973 -25.46391 -24.03551 -22.66952 -21.72675 -21.27058 -20.79900 -19.60375 -18.87446 -18.20668 -17.60386 -17.09814 -16.84075 -16.51708 -16.35167 -15.76384 -15.66086 -15.45178 -15.29641 -14.92550 -14.67841 -14.46173 -14.16617 -14.08396 -13.94760 -13.78870 -13.58058 -13.53066 -13.25223 -13.08384 -13.03149 -12.83043 -12.72543 -12.62378 -12.49384 -12.24084 -12.15848 -12.11131 -11.96788 -11.90288 -11.82978 -11.74663 -11.58715 -11.43790 -11.36380 -11.07511 -10.71356 -10.09929 -9.74863 -8.90448 -7.85910 -5.21330 -0.17637 1.43355 1.47174 1.53327 1.53725 1.83057 2.48554 2.82032 3.31374 3.42171 3.59076 3.61438 3.82301 3.82949 3.86898 3.93910 4.05629 4.14729 4.22662 4.26439 4.28632 4.41082 4.53739 4.60368 4.66631 4.67563 4.72020 4.75856 4.82214 4.83319 4.86963 4.90558 4.92660 4.93214 4.94379 5.00588 5.06639 5.09444 5.12739 5.21638 5.26644 5.31055 5.32001 5.38872 5.43392 5.45925 5.52687 5.68696 5.77923 5.85325 6.19156 6.20471 6.79071 7.09571 7.77148 8.42388 9.24418 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017854 B = 0.002611 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.863258 B =10719.689852 C =11881.196151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.094 4.094 3 C -0.141 4.141 4 C -0.143 4.143 5 C 0.368 3.632 6 O -0.416 6.416 7 C 0.465 3.535 8 O -0.533 6.533 9 N -0.584 5.584 10 C 0.073 3.927 11 C -0.128 4.128 12 C -0.113 4.113 13 C -0.073 4.073 14 H 0.061 0.939 15 C -0.076 4.076 16 H 0.080 0.920 17 C -0.119 4.119 18 C 0.183 3.817 19 N -0.630 5.630 20 C -0.246 4.246 21 H 0.078 0.922 22 C -0.067 4.067 23 N -0.952 5.952 24 Si 0.979 3.021 25 H -0.278 1.278 26 H -0.292 1.292 27 H -0.276 1.276 28 C 0.137 3.863 29 C 0.112 3.888 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.124 0.876 41 H 0.102 0.898 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.085 0.915 47 H 0.002 0.998 48 H 0.012 0.988 49 H 0.247 0.753 50 H 0.036 0.964 51 H 0.012 0.988 52 H 0.074 0.926 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.300 -0.568 -5.709 28.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.095 4.095 3 C -0.198 4.198 4 C -0.201 4.201 5 C 0.239 3.761 6 O -0.287 6.287 7 C 0.250 3.750 8 O -0.410 6.410 9 N -0.318 5.318 10 C -0.047 4.047 11 C -0.166 4.166 12 C -0.150 4.150 13 C -0.093 4.093 14 H 0.080 0.920 15 C -0.096 4.096 16 H 0.098 0.902 17 C -0.157 4.157 18 C 0.058 3.942 19 N -0.357 5.357 20 C -0.375 4.375 21 H 0.096 0.904 22 C -0.260 4.260 23 N -0.601 5.601 24 Si 0.807 3.193 25 H -0.204 1.204 26 H -0.218 1.218 27 H -0.202 1.202 28 C 0.012 3.988 29 C -0.010 4.010 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.142 0.858 41 H 0.120 0.880 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.103 0.897 47 H 0.020 0.980 48 H 0.030 0.970 49 H 0.056 0.944 50 H 0.054 0.946 51 H 0.030 0.970 52 H 0.093 0.907 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -28.112 -0.653 -5.681 28.687 hybrid contribution 1.851 0.045 -0.194 1.862 sum -26.260 -0.607 -5.876 26.917 Atomic orbital electron populations 1.21781 0.90481 1.03015 1.03559 1.21048 0.98489 0.97195 0.92779 1.21884 1.01652 0.92435 1.03880 1.21927 1.02315 1.00105 0.95715 1.25104 0.87577 0.76008 0.87373 1.90187 1.58605 1.37098 1.42787 1.21316 0.91622 0.79037 0.82997 1.90727 1.57773 1.48110 1.44430 1.48402 1.09786 1.61234 1.12342 1.22840 0.94463 1.02257 0.85171 1.21932 0.96522 1.00067 0.98120 1.21596 0.94164 1.02308 0.96939 1.21296 0.93040 0.99603 0.95337 0.92027 1.22174 0.92743 0.99820 0.94838 0.90214 1.22726 0.94651 1.00294 0.97997 1.21012 0.92098 0.97224 0.83862 1.44945 1.01113 1.86053 1.03575 1.19429 0.83712 1.42540 0.91784 0.90413 1.25663 1.01255 1.02558 0.96531 1.70183 1.26512 1.57657 1.05711 0.85147 0.78855 0.78239 0.77073 1.20438 1.21775 1.20182 1.21736 0.85180 0.96815 0.95080 1.21772 0.80100 1.00153 0.98946 0.91978 0.89460 0.92140 0.92685 0.89012 0.91971 0.92291 0.89216 0.91937 0.89874 0.85849 0.88012 0.92281 0.90624 0.90687 0.91586 0.89668 0.97961 0.97012 0.94374 0.94600 0.96997 0.90722 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 7.76 71.98 0.56 -0.93 16 2 C -0.09 -1.44 0.76 -52.93 -0.04 -1.48 16 3 C -0.14 -2.10 8.29 71.98 0.60 -1.50 16 4 C -0.14 -2.17 8.29 71.98 0.60 -1.58 16 5 C 0.37 7.25 5.86 28.60 0.17 7.42 16 6 O -0.42 -8.23 12.85 -1.50 -0.02 -8.25 16 7 C 0.47 11.50 7.35 87.16 0.64 12.14 16 8 O -0.53 -16.04 12.91 -3.30 -0.04 -16.08 16 9 N -0.58 -13.47 2.97 -820.91 -2.44 -15.91 16 10 C 0.07 1.29 5.96 86.36 0.51 1.80 16 11 C -0.13 -2.06 6.08 30.67 0.19 -1.87 16 12 C -0.11 -2.18 4.97 30.62 0.15 -2.03 16 13 C -0.07 -1.88 1.86 -10.72 -0.02 -1.90 16 14 H 0.06 1.77 8.08 -2.38 -0.02 1.75 16 15 C -0.08 -2.51 2.56 -9.40 -0.02 -2.53 16 16 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 17 C -0.12 -4.27 5.27 31.78 0.17 -4.10 16 18 C 0.18 9.32 5.39 86.64 0.47 9.79 16 19 N -0.63 -34.03 3.41 -690.78 -2.35 -36.38 16 20 C -0.25 -14.46 10.28 84.03 0.86 -13.59 16 21 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 22 C -0.07 -3.97 5.49 84.86 0.47 -3.51 16 23 N -0.95 -59.01 10.31 21.65 0.22 -58.78 16 24 Si 0.98 47.29 29.55 68.60 2.03 49.31 16 25 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 26 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 27 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 28 C 0.14 5.87 6.06 86.85 0.53 6.40 16 29 C 0.11 2.87 5.51 86.36 0.48 3.35 16 30 H 0.06 0.72 8.10 -2.39 -0.02 0.70 16 31 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.72 8.10 -2.38 -0.02 0.70 16 33 H 0.05 1.09 6.72 -2.39 -0.02 1.08 16 34 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.06 1.27 6.18 -2.39 -0.01 1.26 16 39 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.12 2.17 4.39 -41.26 -0.18 1.98 16 41 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.07 1.45 7.21 -2.38 -0.02 1.43 16 45 H 0.07 2.25 8.04 -2.39 -0.02 2.23 16 46 H 0.08 2.63 8.08 -2.39 -0.02 2.61 16 47 H 0.00 0.12 7.51 -2.38 -0.02 0.10 16 48 H 0.01 0.66 7.39 -2.39 -0.02 0.64 16 49 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 50 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 51 H 0.01 0.54 7.99 -2.38 -0.02 0.52 16 52 H 0.07 2.29 6.61 -2.38 -0.02 2.27 16 53 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -71.61 399.31 4.39 -67.22 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.70 Total: 13.00 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: 6.30 Total: 5.87 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -4.57 Total: -111.07 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.06 Total: -24.33 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.31 kcal Total: -71.61 4.39 -67.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961155278.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.228 kcal (2) G-P(sol) polarization free energy of solvation -71.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds