Wall clock time and date at job start Tue Mar 31 2020 19:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47027 * 2 1 4 4 C 1.53001 * 109.46932 * 239.99709 * 2 1 3 5 5 C 1.50699 * 109.47025 * 120.00121 * 2 1 3 6 6 O 1.20782 * 120.00206 * 359.97438 * 5 2 1 7 7 C 1.49087 * 120.00201 * 180.02562 * 5 2 1 8 8 O 1.21366 * 119.99569 * 351.83044 * 7 5 2 9 9 N 1.34776 * 120.00499 * 171.83085 * 7 5 2 10 10 C 1.46927 * 120.62772 * 1.11757 * 9 7 5 11 11 C 1.53195 * 108.77565 * 233.63242 * 10 9 7 12 12 C 1.53043 * 109.30884 * 305.36142 * 11 10 9 13 13 C 1.53041 * 109.53528 * 61.36451 * 12 11 10 14 14 H 1.08999 * 109.52253 * 58.60661 * 13 12 11 15 15 C 1.53003 * 109.49498 * 178.68300 * 13 12 11 16 16 H 1.09007 * 109.87096 * 297.89671 * 15 13 12 17 17 C 1.54320 * 110.01360 * 58.99718 * 15 13 12 18 18 C 1.55153 * 102.94443 * 141.68282 * 17 15 13 19 19 C 1.55129 * 101.48374 * 324.33335 * 18 17 15 20 20 N 1.47025 * 109.88215 * 176.88210 * 15 13 12 21 21 C 1.36943 * 125.64738 * 61.45091 * 20 15 13 22 22 H 1.07995 * 119.99940 * 15.30775 * 21 20 15 23 23 C 1.38811 * 119.99584 * 195.31070 * 21 20 15 24 24 N 1.31618 * 120.00128 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99793 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46994 * 269.99997 * 25 23 21 27 27 H 1.48499 * 109.47280 * 29.99661 * 25 23 21 28 28 H 1.48487 * 109.47344 * 149.99890 * 25 23 21 29 29 C 1.46920 * 120.63320 * 181.13858 * 9 7 5 30 30 H 1.08995 * 109.47463 * 300.00089 * 1 2 3 31 31 H 1.09000 * 109.47294 * 60.00686 * 1 2 3 32 32 H 1.09003 * 109.47427 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46969 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47261 * 299.99731 * 3 2 1 35 35 H 1.08997 * 109.47546 * 60.00485 * 3 2 1 36 36 H 1.09001 * 109.47288 * 299.99769 * 4 2 1 37 37 H 1.08998 * 109.47130 * 60.00407 * 4 2 1 38 38 H 1.09004 * 109.46810 * 180.02562 * 4 2 1 39 39 H 1.09006 * 109.58801 * 353.41376 * 10 9 7 40 40 H 1.08995 * 109.58976 * 113.84078 * 10 9 7 41 41 H 1.09000 * 109.49909 * 65.31127 * 11 10 9 42 42 H 1.08998 * 109.49985 * 185.38316 * 11 10 9 43 43 H 1.09004 * 109.46023 * 301.34758 * 12 11 10 44 44 H 1.08992 * 109.45794 * 181.38600 * 12 11 10 45 45 H 1.09001 * 110.71745 * 260.04911 * 17 15 13 46 46 H 1.08998 * 110.71624 * 23.31613 * 17 15 13 47 47 H 1.08994 * 111.00561 * 82.57277 * 18 17 15 48 48 H 1.09004 * 111.00332 * 206.38834 * 18 17 15 49 49 H 1.09006 * 110.49581 * 278.44840 * 19 18 17 50 50 H 1.09003 * 110.33969 * 156.06266 * 19 18 17 51 51 H 0.97003 * 119.99795 * 180.02562 * 24 23 21 52 52 H 1.08996 * 109.58861 * 6.57859 * 29 9 7 53 53 H 1.09009 * 109.70045 * 246.22621 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2304 6 8 1.2474 -1.1691 2.0257 7 6 3.4980 -0.8462 1.4667 8 8 4.2848 -0.5191 0.6024 9 7 3.9494 -1.3321 2.6400 10 6 3.0089 -1.7551 3.6865 11 6 3.3623 -1.0307 4.9893 12 6 4.8334 -1.2845 5.3264 13 6 5.7181 -0.7276 4.2086 14 1 5.5307 0.3400 4.0934 15 6 7.1896 -0.9526 4.5620 16 1 7.4376 -0.4136 5.4765 17 6 7.4631 -2.4596 4.7503 18 6 8.8697 -2.6389 4.1205 19 6 8.8091 -1.6359 2.9387 20 7 8.0451 -0.4880 3.4602 21 6 8.1162 0.7970 2.9922 22 1 7.7127 1.6086 3.5794 23 6 8.7068 1.0562 1.7631 24 7 9.1981 0.0670 1.0473 25 14 8.8044 2.8091 1.1249 26 1 7.5901 3.1134 0.3261 27 1 8.8911 3.7492 2.2712 28 1 10.0094 2.9584 0.2702 29 6 5.3913 -1.4485 2.8970 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1300 1.4424 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7490 -1.2492 37 1 1.6766 -0.2075 -2.1392 38 1 3.1300 -0.7217 -1.2490 39 1 1.9920 -1.4978 3.3897 40 1 3.0870 -2.8321 3.8345 41 1 3.1966 0.0397 4.8669 42 1 2.7336 -1.4062 5.7966 43 1 5.0038 -2.3567 5.4242 44 1 5.0811 -0.7904 6.2658 45 1 7.4785 -2.7194 5.8088 46 1 6.7228 -3.0555 4.2166 47 1 9.6524 -2.3667 4.8285 48 1 9.0092 -3.6580 3.7597 49 1 8.2929 -2.0798 2.0873 50 1 9.8142 -1.3248 2.6538 51 1 9.6112 0.2482 0.1885 52 1 5.9465 -0.9890 2.0793 53 1 5.6661 -2.5001 2.9798 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963278229.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:38 Heat of formation + Delta-G solvation = -53.230835 kcal Electronic energy + Delta-G solvation = -32131.023825 eV Core-core repulsion = 28196.209356 eV Total energy + Delta-G solvation = -3934.814469 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.35031 -40.56784 -39.41112 -38.14010 -36.75333 -34.70076 -33.79017 -32.34751 -31.15822 -28.89161 -28.32642 -28.16370 -27.53202 -26.48635 -25.42395 -24.16170 -22.63981 -22.12933 -21.52240 -19.93858 -19.67402 -18.66819 -18.18525 -17.64314 -16.98862 -16.93868 -16.66243 -16.27543 -15.77466 -15.68156 -15.52802 -15.27390 -14.79829 -14.73160 -14.47211 -14.27451 -13.97996 -13.94961 -13.73733 -13.49839 -13.16991 -13.14464 -13.07958 -12.94394 -12.85887 -12.82117 -12.71222 -12.65678 -12.47652 -12.11088 -12.01664 -11.98144 -11.94211 -11.81030 -11.57313 -11.48335 -11.37086 -11.17427 -11.14372 -10.65239 -9.97220 -9.69287 -8.74187 -7.85329 -5.19245 -0.21038 1.38239 1.42314 1.48081 1.57014 1.86892 2.48169 2.84779 3.33994 3.36170 3.62809 3.78061 3.81578 3.88851 3.91725 4.07876 4.10779 4.16492 4.20896 4.29014 4.31132 4.37313 4.56236 4.61241 4.66365 4.70788 4.76924 4.77806 4.81751 4.86293 4.89737 4.90134 4.92917 4.96201 4.99937 5.06111 5.12790 5.17391 5.20656 5.24760 5.27066 5.27256 5.33365 5.45894 5.49543 5.55796 5.59541 5.68500 5.81261 5.90709 6.26983 6.28020 6.86803 7.13946 7.83306 8.49845 9.26018 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010388 B = 0.004861 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.799812 B = 5758.764767 C = 7487.838787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.092 4.092 3 C -0.143 4.143 4 C -0.143 4.143 5 C 0.375 3.625 6 O -0.410 6.410 7 C 0.453 3.547 8 O -0.539 6.539 9 N -0.583 5.583 10 C 0.049 3.951 11 C -0.126 4.126 12 C -0.108 4.108 13 C -0.094 4.094 14 H 0.033 0.967 15 C 0.158 3.842 16 H 0.037 0.963 17 C -0.113 4.113 18 C -0.137 4.137 19 C 0.179 3.821 20 N -0.611 5.611 21 C -0.227 4.227 22 H 0.068 0.932 23 C -0.055 4.055 24 N -0.942 5.942 25 Si 0.959 3.041 26 H -0.296 1.296 27 H -0.267 1.267 28 H -0.292 1.292 29 C 0.132 3.868 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.042 0.958 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.052 0.948 39 H 0.144 0.856 40 H 0.082 0.918 41 H 0.048 0.952 42 H 0.107 0.893 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.097 0.903 46 H 0.073 0.927 47 H 0.065 0.935 48 H 0.080 0.920 49 H -0.010 1.010 50 H 0.028 0.972 51 H 0.244 0.756 52 H 0.053 0.947 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.621 -5.390 5.225 20.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.093 4.093 3 C -0.200 4.200 4 C -0.200 4.200 5 C 0.248 3.752 6 O -0.281 6.281 7 C 0.238 3.762 8 O -0.417 6.417 9 N -0.317 5.317 10 C -0.071 4.071 11 C -0.164 4.164 12 C -0.146 4.146 13 C -0.115 4.115 14 H 0.052 0.948 15 C 0.051 3.949 16 H 0.055 0.945 17 C -0.151 4.151 18 C -0.175 4.175 19 C 0.054 3.946 20 N -0.335 5.335 21 C -0.356 4.356 22 H 0.086 0.914 23 C -0.249 4.249 24 N -0.590 5.590 25 Si 0.788 3.212 26 H -0.223 1.223 27 H -0.192 1.192 28 H -0.218 1.218 29 C 0.010 3.990 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.071 0.929 39 H 0.160 0.840 40 H 0.100 0.900 41 H 0.067 0.933 42 H 0.126 0.874 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.115 0.885 46 H 0.091 0.909 47 H 0.084 0.916 48 H 0.098 0.902 49 H 0.008 0.992 50 H 0.046 0.954 51 H 0.053 0.947 52 H 0.071 0.929 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.531 -5.360 5.051 19.941 hybrid contribution 1.025 1.196 -0.924 1.826 sum -17.506 -4.164 4.127 18.461 Atomic orbital electron populations 1.21768 0.89627 1.03343 1.03738 1.21043 0.98979 0.96764 0.92536 1.21886 1.01121 0.92971 1.03996 1.21923 1.01875 1.00388 0.95852 1.25110 0.87215 0.75666 0.87258 1.89971 1.58309 1.37677 1.42116 1.21456 0.91868 0.79615 0.83242 1.90791 1.58048 1.48714 1.44123 1.48550 1.08335 1.59719 1.15048 1.23340 0.96392 1.00196 0.87186 1.21898 0.97016 1.00156 0.97340 1.21599 0.93769 1.02048 0.97209 1.21760 0.97163 0.98090 0.94504 0.94807 1.21196 0.88458 0.94734 0.90486 0.94538 1.22637 0.96480 0.94175 1.01794 1.22923 0.97576 0.99103 0.97913 1.21202 0.94696 0.86415 0.92306 1.44722 1.45941 1.04699 1.38105 1.19097 1.32864 0.84150 0.99503 0.91434 1.25522 1.02084 1.00427 0.96892 1.70118 1.44846 1.30775 1.13302 0.85370 0.76491 0.81044 0.78296 1.22324 1.19222 1.21795 1.21480 0.79006 0.99885 0.98611 0.91798 0.89218 0.91645 0.93869 0.88615 0.91865 0.91766 0.88881 0.92921 0.83958 0.89966 0.93275 0.87440 0.89959 0.90589 0.88485 0.90879 0.91611 0.90172 0.99202 0.95355 0.94703 0.92864 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 7.76 71.98 0.56 -1.51 16 2 C -0.09 -2.09 0.76 -52.93 -0.04 -2.13 16 3 C -0.14 -3.39 8.29 71.98 0.60 -2.80 16 4 C -0.14 -3.27 8.29 71.98 0.60 -2.67 16 5 C 0.38 10.47 5.94 28.60 0.17 10.64 16 6 O -0.41 -10.56 12.65 -1.51 -0.02 -10.58 16 7 C 0.45 16.56 7.39 87.16 0.64 17.20 16 8 O -0.54 -24.39 12.88 -3.30 -0.04 -24.44 16 9 N -0.58 -20.05 2.97 -820.95 -2.44 -22.49 16 10 C 0.05 1.22 6.20 86.36 0.54 1.76 16 11 C -0.13 -2.81 6.08 30.67 0.19 -2.63 16 12 C -0.11 -2.71 4.89 30.62 0.15 -2.56 16 13 C -0.09 -3.41 2.10 -10.72 -0.02 -3.43 16 14 H 0.03 1.45 8.06 -2.39 -0.02 1.43 16 15 C 0.16 6.20 2.96 45.34 0.13 6.33 16 16 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 17 C -0.11 -3.53 5.20 31.78 0.17 -3.37 16 18 C -0.14 -4.92 7.10 32.06 0.23 -4.69 16 19 C 0.18 8.95 5.41 86.93 0.47 9.42 16 20 N -0.61 -31.19 2.38 -667.82 -1.59 -32.79 16 21 C -0.23 -13.04 9.86 84.03 0.83 -12.21 16 22 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 23 C -0.06 -3.30 5.47 84.86 0.46 -2.84 16 24 N -0.94 -59.14 10.59 21.65 0.23 -58.91 16 25 Si 0.96 48.68 29.55 68.60 2.03 50.71 16 26 H -0.30 -15.27 7.11 99.48 0.71 -14.57 16 27 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 28 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 29 C 0.13 5.27 5.28 86.36 0.46 5.72 16 30 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 33 H 0.04 1.37 6.71 -2.38 -0.02 1.35 16 34 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.05 1.60 6.18 -2.38 -0.01 1.59 16 39 H 0.14 3.48 3.84 -79.81 -0.31 3.17 16 40 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.08 1.78 7.04 -2.39 -0.02 1.77 16 44 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 46 H 0.07 2.17 5.45 -2.39 -0.01 2.16 16 47 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 48 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 49 H -0.01 -0.56 8.05 -2.38 -0.02 -0.58 16 50 H 0.03 1.61 6.96 -2.39 -0.02 1.59 16 51 H 0.24 15.05 8.31 -92.71 -0.77 14.28 16 52 H 0.05 2.83 6.62 -2.39 -0.02 2.81 16 53 H 0.07 2.62 6.00 -2.38 -0.01 2.61 16 Total: -1.00 -73.85 394.42 4.87 -68.98 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.58 Total: 19.29 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 6.12 Total: 10.23 kcal Atomic # 7 Polarization: -110.39 SS G_CDS: -3.80 Total: -114.19 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.06 Total: -35.02 kcal Atomic # 14 Polarization: 48.68 SS G_CDS: 2.03 Total: 50.71 kcal Total: -73.85 4.87 -68.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963278229.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.750 kcal (2) G-P(sol) polarization free energy of solvation -73.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds