Wall clock time and date at job start Tue Mar 31 2020 19:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47378 * 2 1 4 4 C 1.53002 * 109.47523 * 120.00397 * 2 1 3 5 5 C 1.50701 * 109.46599 * 299.99939 * 4 2 1 6 6 O 1.21277 * 120.00524 * 359.97438 * 5 4 2 7 7 N 1.34781 * 119.99959 * 179.97438 * 5 4 2 8 8 C 1.47487 * 125.66054 * 359.96009 * 7 5 4 9 9 C 1.55023 * 104.90536 * 204.04196 * 8 7 5 10 10 C 1.54489 * 101.53372 * 323.64621 * 9 8 7 11 11 C 1.47180 * 125.66438 * 180.02562 * 7 5 4 12 12 C 1.52519 * 110.09014 * 153.03460 * 10 9 8 13 13 N 1.47314 * 108.39047 * 173.02563 * 12 10 9 14 14 C 1.36936 * 121.05813 * 130.57548 * 13 12 10 15 15 H 1.07998 * 120.00498 * 205.76998 * 14 13 12 16 16 C 1.38821 * 119.99681 * 25.77702 * 14 13 12 17 17 N 1.31609 * 120.00222 * 16.74684 * 16 14 13 18 18 Si 1.86806 * 119.99648 * 196.75195 * 16 14 13 19 19 H 1.48498 * 109.47033 * 89.99482 * 18 16 14 20 20 H 1.48501 * 109.46780 * 209.99678 * 18 16 14 21 21 H 1.48497 * 109.46823 * 329.99743 * 18 16 14 22 22 C 1.47163 * 117.88259 * 310.59408 * 13 12 10 23 23 C 1.53274 * 108.53249 * 51.12789 * 22 13 12 24 24 O 1.42066 * 110.38010 * 276.05644 * 10 9 8 25 25 C 1.53009 * 109.47095 * 240.00222 * 2 1 3 26 26 C 1.52998 * 117.49741 * 128.62109 * 25 2 1 27 27 C 1.52993 * 60.00019 * 252.51429 * 26 25 2 28 28 H 1.08998 * 109.47129 * 299.99452 * 1 2 3 29 29 H 1.09003 * 109.47126 * 59.99961 * 1 2 3 30 30 H 1.09001 * 109.47316 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47499 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46978 * 300.00440 * 3 2 1 33 33 H 1.09004 * 109.46767 * 59.99836 * 3 2 1 34 34 H 1.08996 * 109.47528 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.46891 * 59.99658 * 4 2 1 36 36 H 1.09004 * 110.35395 * 322.90066 * 8 7 5 37 37 H 1.09000 * 110.35310 * 85.07589 * 8 7 5 38 38 H 1.09001 * 111.01119 * 205.58039 * 9 8 7 39 39 H 1.08999 * 111.01358 * 81.71041 * 9 8 7 40 40 H 1.08993 * 109.91362 * 59.08408 * 11 7 5 41 41 H 1.08999 * 110.06152 * 297.90237 * 11 7 5 42 42 H 1.09001 * 109.67965 * 292.74472 * 12 10 9 43 43 H 1.08996 * 109.67944 * 53.26509 * 12 10 9 44 44 H 0.97004 * 119.99987 * 179.97438 * 17 16 14 45 45 H 1.09003 * 109.62559 * 170.83746 * 22 13 12 46 46 H 1.08994 * 109.62640 * 291.21790 * 22 13 12 47 47 H 1.09003 * 109.51055 * 187.18676 * 23 22 13 48 48 H 1.08994 * 109.51400 * 67.04172 * 23 22 13 49 49 H 1.08996 * 115.54988 * 274.32665 * 25 2 1 50 50 H 1.09008 * 117.50126 * 0.02562 * 26 25 2 51 51 H 1.09004 * 117.49798 * 145.02213 * 26 25 2 52 52 H 1.09007 * 117.49735 * 252.51571 * 27 26 25 53 53 H 1.09000 * 117.50003 * 107.49154 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5377 -0.0109 2.4796 6 8 0.8408 0.9754 2.3685 7 7 1.8629 -0.4717 3.7038 8 6 2.6979 -1.6549 3.9833 9 6 2.2755 -2.1148 5.4022 10 6 2.0184 -0.7616 6.1018 11 6 1.4427 0.1215 4.9835 12 6 0.9990 -0.9366 7.2227 13 7 0.9074 0.3298 7.9695 14 6 -0.3060 0.9020 8.2438 15 1 -0.3775 1.9683 8.3996 16 6 -1.4444 0.1114 8.3218 17 7 -1.3319 -1.1922 8.4631 18 14 -3.1361 0.8980 8.2261 19 1 -3.5754 0.9563 6.8088 20 1 -4.1030 0.0893 9.0112 21 1 -3.0746 2.2735 8.7823 22 6 2.1615 0.9607 8.4111 23 6 3.1040 1.0662 7.2070 24 8 3.2355 -0.2214 6.5968 25 6 2.0400 -0.7212 -1.2493 26 6 3.0741 0.0052 -2.1117 27 6 1.6357 -0.1494 -2.6096 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1300 -0.7209 1.2494 35 1 1.6767 -1.7490 1.2491 36 1 2.4979 -2.4407 3.2548 37 1 3.7540 -1.3856 3.9690 38 1 3.0816 -2.6611 5.8920 39 1 1.3660 -2.7142 5.3642 40 1 0.3547 0.1374 5.0459 41 1 1.8343 1.1349 5.0724 42 1 0.0258 -1.1838 6.7985 43 1 1.3218 -1.7350 7.8909 44 1 -2.1274 -1.7446 8.5180 45 1 1.9527 1.9570 8.8010 46 1 2.6232 0.3525 9.1889 47 1 4.0824 1.4129 7.5398 48 1 2.6938 1.7713 6.4842 49 1 2.1267 -1.8044 -1.1643 50 1 3.3915 0.9969 -1.7889 51 1 3.8415 -0.6001 -2.5943 52 1 1.4568 -0.8564 -3.4197 53 1 1.0064 0.7406 -2.6145 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972372744.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:26 Heat of formation + Delta-G solvation = -40.268467 kcal Electronic energy + Delta-G solvation = -31358.599417 eV Core-core repulsion = 27424.347038 eV Total energy + Delta-G solvation = -3934.252379 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.74710 -40.70468 -39.10902 -37.49761 -36.29242 -34.45506 -33.36521 -33.06335 -30.40482 -29.90954 -28.83386 -28.27724 -27.09403 -25.09288 -24.69995 -23.96527 -23.00161 -22.63865 -20.66199 -20.13690 -19.21770 -18.87285 -18.23255 -17.80616 -17.06234 -16.71958 -16.56849 -16.29233 -16.11533 -15.75663 -15.34091 -15.29262 -15.04118 -14.86364 -14.68904 -14.53237 -14.36617 -13.89793 -13.64365 -13.34007 -13.23401 -13.00395 -12.89473 -12.78392 -12.71678 -12.52741 -12.48378 -12.29006 -12.21063 -12.17670 -12.15100 -11.95640 -11.83047 -11.78212 -11.64327 -11.17118 -11.09195 -10.81452 -10.71201 -10.58528 -10.41397 -9.61671 -8.76058 -7.94452 -5.38940 1.40074 1.43768 1.50169 1.67059 1.98505 2.42905 2.76218 2.98234 3.19506 3.36865 3.52203 3.68351 3.72315 3.76355 3.98658 4.03928 4.08590 4.22103 4.24587 4.28456 4.30981 4.35795 4.38586 4.52561 4.56393 4.59814 4.62109 4.68936 4.75268 4.80365 4.82907 4.84153 4.87952 4.91777 5.02167 5.05186 5.05969 5.11031 5.12710 5.15385 5.18452 5.21787 5.28752 5.35626 5.42243 5.49269 5.53513 5.57658 5.60966 6.25545 6.34358 6.60977 7.04117 7.23443 7.72382 8.25384 9.11415 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014314 B = 0.003252 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.598907 B = 8609.139946 C = 9622.348449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.012 4.012 3 C -0.151 4.151 4 C -0.114 4.114 5 C 0.516 3.484 6 O -0.574 6.574 7 N -0.619 5.619 8 C 0.107 3.893 9 C -0.114 4.114 10 C 0.092 3.908 11 C 0.111 3.889 12 C 0.173 3.827 13 N -0.615 5.615 14 C -0.261 4.261 15 H 0.066 0.934 16 C -0.045 4.045 17 N -0.930 5.930 18 Si 0.959 3.041 19 H -0.292 1.292 20 H -0.289 1.289 21 H -0.269 1.269 22 C 0.105 3.895 23 C 0.051 3.949 24 O -0.371 6.371 25 C -0.143 4.143 26 C -0.180 4.180 27 C -0.181 4.181 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.037 0.963 41 H 0.050 0.950 42 H 0.063 0.937 43 H 0.010 0.990 44 H 0.252 0.748 45 H 0.068 0.932 46 H 0.025 0.975 47 H 0.124 0.876 48 H 0.040 0.960 49 H 0.119 0.881 50 H 0.095 0.905 51 H 0.105 0.895 52 H 0.103 0.897 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.681 -3.383 -18.666 22.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.012 4.012 3 C -0.208 4.208 4 C -0.153 4.153 5 C 0.308 3.692 6 O -0.454 6.454 7 N -0.353 5.353 8 C -0.014 4.014 9 C -0.152 4.152 10 C 0.050 3.950 11 C -0.012 4.012 12 C 0.047 3.953 13 N -0.339 5.339 14 C -0.391 4.391 15 H 0.084 0.916 16 C -0.241 4.241 17 N -0.576 5.576 18 Si 0.788 3.212 19 H -0.219 1.219 20 H -0.216 1.216 21 H -0.193 1.193 22 C -0.020 4.020 23 C -0.026 4.026 24 O -0.290 6.290 25 C -0.161 4.161 26 C -0.216 4.216 27 C -0.218 4.218 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.107 0.893 38 H 0.130 0.870 39 H 0.106 0.894 40 H 0.056 0.944 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.028 0.972 44 H 0.061 0.939 45 H 0.086 0.914 46 H 0.043 0.957 47 H 0.142 0.858 48 H 0.058 0.942 49 H 0.137 0.863 50 H 0.114 0.886 51 H 0.123 0.877 52 H 0.121 0.879 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.346 -3.021 -18.773 22.671 hybrid contribution -1.764 0.773 0.746 2.066 sum 10.582 -2.248 -18.026 21.023 Atomic orbital electron populations 1.22014 0.95195 1.01477 1.01870 1.19712 0.94954 0.94598 0.91967 1.22143 1.00643 0.96104 1.01932 1.21762 1.03533 1.00652 0.89386 1.21201 0.79575 0.84323 0.84148 1.90590 1.39976 1.28652 1.86222 1.48823 1.51403 1.30335 1.04699 1.22575 0.95289 0.86926 0.96659 1.22763 1.03835 0.94001 0.94616 1.22452 0.86003 0.94215 0.92337 1.22009 0.98200 0.97169 0.83860 1.21017 0.96631 0.87089 0.90566 1.44388 1.01574 1.25042 1.62942 1.19457 0.85328 0.91488 1.42848 0.91584 1.25659 1.01375 0.96172 1.00848 1.70129 1.28571 1.04649 1.54238 0.85386 0.80415 0.78243 0.77195 1.21899 1.21554 1.19347 1.21765 0.87278 0.97642 0.95365 1.23118 1.00957 0.84538 0.94036 1.87670 1.29904 1.34587 1.76814 1.22281 1.04235 0.99330 0.90296 1.23192 0.92529 1.02530 1.03399 1.22959 0.98370 1.03256 0.97187 0.93125 0.92770 0.92680 0.91993 0.92832 0.92967 0.86612 0.86721 0.86972 0.89328 0.87043 0.89386 0.94437 0.93132 0.91829 0.97197 0.93915 0.91399 0.95676 0.85831 0.94172 0.86348 0.88629 0.87711 0.87887 0.89742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 8.02 71.98 0.58 -3.03 16 2 C -0.01 -0.24 0.62 -52.18 -0.03 -0.27 16 3 C -0.15 -3.46 6.77 71.98 0.49 -2.97 16 4 C -0.11 -2.21 3.76 29.85 0.11 -2.10 16 5 C 0.52 15.58 7.26 87.66 0.64 16.22 16 6 O -0.57 -22.16 11.68 -3.02 -0.04 -22.20 16 7 N -0.62 -18.95 3.33 -812.27 -2.71 -21.65 16 8 C 0.11 2.34 6.69 86.88 0.58 2.92 16 9 C -0.11 -3.13 6.21 31.79 0.20 -2.93 16 10 C 0.09 3.41 0.81 -10.22 -0.01 3.40 16 11 C 0.11 4.36 5.96 86.48 0.52 4.88 16 12 C 0.17 8.23 3.98 86.06 0.34 8.58 16 13 N -0.61 -31.05 2.97 -698.63 -2.08 -33.12 16 14 C -0.26 -14.54 9.66 84.04 0.81 -13.73 16 15 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 16 C -0.04 -2.52 4.96 84.87 0.42 -2.10 16 17 N -0.93 -54.51 11.12 21.65 0.24 -54.27 16 18 Si 0.96 46.00 29.59 68.60 2.03 48.03 16 19 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 20 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 22 C 0.10 4.33 6.72 86.34 0.58 4.91 16 23 C 0.05 1.75 6.76 72.07 0.49 2.23 16 24 O -0.37 -13.21 10.26 -148.97 -1.53 -14.74 16 25 C -0.14 -2.12 5.15 -10.79 -0.06 -2.18 16 26 C -0.18 -2.38 9.57 30.59 0.29 -2.09 16 27 C -0.18 -2.58 9.38 30.59 0.29 -2.29 16 28 H 0.05 1.62 5.51 -2.39 -0.01 1.61 16 29 H 0.05 1.22 7.29 -2.39 -0.02 1.20 16 30 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.22 6.98 -2.39 -0.02 1.21 16 32 H 0.05 1.14 7.07 -2.39 -0.02 1.13 16 33 H 0.05 1.58 5.51 -2.38 -0.01 1.57 16 34 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.11 1.72 7.85 -2.39 -0.02 1.70 16 36 H 0.11 1.63 7.48 -2.38 -0.02 1.61 16 37 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.09 2.47 8.01 -2.39 -0.02 2.45 16 40 H 0.04 1.77 7.61 -2.39 -0.02 1.76 16 41 H 0.05 2.13 6.00 -2.39 -0.01 2.11 16 42 H 0.06 3.44 5.90 -2.39 -0.01 3.42 16 43 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 45 H 0.07 2.68 7.96 -2.39 -0.02 2.66 16 46 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 48 H 0.04 1.45 6.22 -2.39 -0.01 1.44 16 49 H 0.12 1.41 8.11 -2.39 -0.02 1.39 16 50 H 0.10 1.38 5.85 -2.38 -0.01 1.36 16 51 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 52 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 53 H 0.08 1.36 7.07 -2.39 -0.02 1.35 16 Total: -1.00 -70.37 392.44 3.05 -67.33 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.89 Total: 21.18 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 6.23 Total: 9.45 kcal Atomic # 7 Polarization: -104.51 SS G_CDS: -4.54 Total: -109.05 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -1.56 Total: -36.94 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -70.37 3.05 -67.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972372744.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.061 kcal (2) G-P(sol) polarization free energy of solvation -70.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds