Wall clock time and date at job start Tue Mar 31 2020 19:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46950 * 2 1 4 4 C 1.52999 * 109.46843 * 239.99956 * 2 1 3 5 5 C 1.50697 * 109.47373 * 119.99815 * 2 1 3 6 6 O 1.20786 * 119.99959 * 0.02562 * 5 2 1 7 7 C 1.49079 * 120.00072 * 179.97438 * 5 2 1 8 8 O 1.21370 * 120.00356 * 7.86603 * 7 5 2 9 9 N 1.34778 * 120.00193 * 187.86624 * 7 5 2 10 10 C 1.46928 * 120.62808 * 8.18537 * 9 7 5 11 11 C 1.53629 * 108.54006 * 126.36746 * 10 9 7 12 12 C 1.53047 * 109.24042 * 54.85789 * 11 10 9 13 13 C 1.53002 * 109.44944 * 178.49369 * 12 11 10 14 14 H 1.08993 * 109.87560 * 177.24132 * 13 12 11 15 15 C 1.54327 * 109.88003 * 56.22243 * 13 12 11 16 16 C 1.55157 * 102.94027 * 218.38913 * 15 13 12 17 17 C 1.54911 * 101.58291 * 35.50513 * 16 15 13 18 18 N 1.47022 * 109.88162 * 298.41808 * 13 12 11 19 19 C 1.36945 * 125.64619 * 298.33242 * 18 13 12 20 20 H 1.07996 * 119.99993 * 349.57687 * 19 18 13 21 21 C 1.38807 * 119.99849 * 169.57594 * 19 18 13 22 22 N 1.31625 * 120.00345 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00027 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47012 * 59.99924 * 23 21 19 25 25 H 1.48497 * 109.47303 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46976 * 300.00140 * 23 21 19 27 27 C 1.53041 * 109.53827 * 298.50720 * 12 11 10 28 28 C 1.46927 * 120.63362 * 188.46834 * 9 7 5 29 29 H 1.09007 * 109.46666 * 300.00255 * 1 2 3 30 30 H 1.09000 * 109.47734 * 59.99999 * 1 2 3 31 31 H 1.09003 * 109.47388 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46908 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46740 * 299.99756 * 3 2 1 34 34 H 1.08999 * 109.47409 * 60.00250 * 3 2 1 35 35 H 1.08997 * 109.47284 * 299.99743 * 4 2 1 36 36 H 1.09000 * 109.47167 * 60.00036 * 4 2 1 37 37 H 1.09002 * 109.47099 * 179.97438 * 4 2 1 38 38 H 1.08993 * 109.58592 * 246.19667 * 10 9 7 39 39 H 1.08990 * 109.58682 * 6.63224 * 10 9 7 40 40 H 1.08996 * 109.64004 * 294.86928 * 11 10 9 41 41 H 1.08998 * 109.43162 * 174.72236 * 11 10 9 42 42 H 1.08998 * 109.45954 * 58.53162 * 12 11 10 43 43 H 1.08998 * 110.71860 * 336.75275 * 15 13 12 44 44 H 1.08994 * 110.71713 * 99.85214 * 15 13 12 45 45 H 1.09004 * 111.00125 * 153.57374 * 16 15 13 46 46 H 1.08997 * 111.00957 * 277.42904 * 16 15 13 47 47 H 1.09003 * 110.36753 * 81.82984 * 17 16 15 48 48 H 1.09002 * 110.36437 * 204.03952 * 17 16 15 49 49 H 0.96997 * 120.00105 * 180.02562 * 22 21 19 50 50 H 1.08996 * 109.49486 * 301.41458 * 27 12 11 51 51 H 1.08998 * 109.49427 * 181.31676 * 27 12 11 52 52 H 1.09004 * 109.58379 * 353.37081 * 28 9 7 53 53 H 1.08999 * 109.58985 * 113.79600 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7103 1.2304 6 8 1.2475 -1.1698 2.0253 7 6 3.4981 -0.8470 1.4660 8 8 4.2851 -0.2665 0.7472 9 7 3.9494 -1.6153 2.4773 10 6 3.0257 -2.4637 3.2426 11 6 3.5620 -3.9033 3.2318 12 6 5.0003 -3.9096 3.7548 13 6 5.5264 -5.3461 3.7814 14 1 6.5667 -5.3538 4.1065 15 6 5.4109 -5.9734 2.3761 16 6 4.9896 -7.4351 2.6817 17 6 4.0747 -7.2433 3.9170 18 7 4.7088 -6.1612 4.6918 19 6 4.5611 -5.9504 6.0368 20 1 5.1944 -5.2380 6.5445 21 6 3.5974 -6.6523 6.7476 22 7 2.8251 -7.5202 6.1288 23 14 3.3954 -6.3643 8.5822 24 1 3.0535 -4.9397 8.8249 25 1 2.3073 -7.2306 9.1025 26 1 4.6654 -6.6940 9.2777 27 6 5.8825 -3.0605 2.8366 28 6 5.3734 -1.6156 2.8394 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7209 -1.2495 38 1 2.9626 -2.1021 4.2689 39 1 2.0382 -2.4368 2.7821 40 1 3.5432 -4.2936 2.2143 41 1 2.9391 -4.5271 3.8728 42 1 5.0219 -3.4963 4.7631 43 1 4.6454 -5.4661 1.7891 44 1 6.3713 -5.9456 1.8614 45 1 4.4346 -7.8642 1.8474 46 1 5.8563 -8.0481 2.9288 47 1 3.0725 -6.9495 3.6049 48 1 4.0346 -8.1601 4.5052 49 1 2.1514 -8.0104 6.6255 50 1 5.8417 -3.4588 1.8229 51 1 6.9111 -3.0845 3.1964 52 1 5.9353 -1.0289 2.1126 53 1 5.4978 -1.1862 3.8334 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004397731.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:39 Heat of formation + Delta-G solvation = -54.803800 kcal Electronic energy + Delta-G solvation = -31504.139599 eV Core-core repulsion = 27569.256921 eV Total energy + Delta-G solvation = -3934.882678 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.31140 -40.51678 -39.55016 -38.06399 -36.69566 -34.72246 -33.71408 -32.09208 -31.20088 -29.42725 -28.35106 -28.23740 -27.13280 -26.46999 -24.92407 -24.42353 -22.89202 -21.99781 -21.43068 -20.15613 -19.46100 -18.63111 -18.13154 -17.66267 -16.97784 -16.88451 -16.60402 -16.26189 -15.81146 -15.63672 -15.56227 -15.35581 -14.79075 -14.70500 -14.59593 -14.11031 -13.99958 -13.82457 -13.65949 -13.46167 -13.23876 -13.09256 -13.06552 -12.99236 -12.83834 -12.73929 -12.64614 -12.56709 -12.46907 -12.19868 -12.06272 -11.94783 -11.89406 -11.81634 -11.62313 -11.46986 -11.25379 -11.18066 -10.97163 -10.62219 -10.07676 -9.78707 -8.74484 -7.78785 -5.13850 -0.16507 1.45961 1.47408 1.53491 1.56621 1.83297 2.52067 2.78623 3.37603 3.42410 3.65218 3.81291 3.84876 3.87603 3.91202 4.08753 4.14039 4.21631 4.23013 4.27774 4.32247 4.36727 4.54704 4.59125 4.66726 4.73048 4.76119 4.79487 4.85057 4.85996 4.88273 4.92695 4.93189 5.00981 5.01492 5.04699 5.08842 5.15281 5.20351 5.21848 5.25994 5.31931 5.35594 5.48973 5.53803 5.61080 5.65846 5.72446 5.84389 5.89915 6.17502 6.31239 6.77131 7.17068 7.86885 8.53453 9.30359 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014673 B = 0.003284 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.826400 B = 8524.596954 C = 9028.528982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.093 4.093 3 C -0.140 4.140 4 C -0.139 4.139 5 C 0.358 3.642 6 O -0.426 6.426 7 C 0.473 3.527 8 O -0.525 6.525 9 N -0.580 5.580 10 C 0.083 3.917 11 C -0.106 4.106 12 C -0.086 4.086 13 C 0.159 3.841 14 H 0.031 0.969 15 C -0.117 4.117 16 C -0.138 4.138 17 C 0.176 3.824 18 N -0.609 5.609 19 C -0.223 4.223 20 H 0.075 0.925 21 C -0.062 4.062 22 N -0.948 5.948 23 Si 0.966 3.034 24 H -0.280 1.280 25 H -0.298 1.298 26 H -0.280 1.280 27 C -0.115 4.115 28 C 0.107 3.893 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.121 0.879 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.047 0.953 43 H 0.072 0.928 44 H 0.086 0.914 45 H 0.077 0.923 46 H 0.060 0.940 47 H -0.009 1.009 48 H 0.038 0.962 49 H 0.244 0.756 50 H 0.071 0.929 51 H 0.089 0.911 52 H 0.099 0.901 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.638 15.585 -15.694 22.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.094 4.094 3 C -0.197 4.197 4 C -0.197 4.197 5 C 0.230 3.770 6 O -0.297 6.297 7 C 0.258 3.742 8 O -0.403 6.403 9 N -0.314 5.314 10 C -0.038 4.038 11 C -0.144 4.144 12 C -0.107 4.107 13 C 0.052 3.948 14 H 0.049 0.951 15 C -0.154 4.154 16 C -0.177 4.177 17 C 0.051 3.949 18 N -0.333 5.333 19 C -0.353 4.353 20 H 0.093 0.907 21 C -0.255 4.255 22 N -0.597 5.597 23 Si 0.795 3.205 24 H -0.207 1.207 25 H -0.224 1.224 26 H -0.206 1.206 27 C -0.153 4.153 28 C -0.015 4.015 29 H 0.075 0.925 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.138 0.862 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.090 0.910 44 H 0.105 0.895 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.009 0.991 48 H 0.056 0.944 49 H 0.053 0.947 50 H 0.089 0.911 51 H 0.108 0.892 52 H 0.118 0.882 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.516 15.553 -15.445 21.925 hybrid contribution -0.385 -0.484 1.801 1.904 sum 0.131 15.070 -13.644 20.329 Atomic orbital electron populations 1.21799 0.91151 1.02744 1.03439 1.21060 0.98095 0.97749 0.92513 1.21912 1.02583 0.91705 1.03510 1.21879 1.02051 1.00051 0.95672 1.25389 0.88170 0.75951 0.87504 1.90234 1.59053 1.36003 1.44398 1.21089 0.91350 0.80652 0.81117 1.90665 1.57337 1.46993 1.45282 1.48383 1.10144 1.41123 1.31712 1.22718 0.94797 0.89679 0.96645 1.21793 0.97136 0.94846 1.00637 1.21446 0.94634 0.96565 0.98046 1.21149 0.93332 0.90115 0.90169 0.95132 1.22647 1.01924 0.95170 0.95664 1.22888 0.99615 0.97021 0.98156 1.21237 0.92049 0.91653 0.89942 1.44707 1.54768 1.30263 1.03574 1.19203 1.12812 1.19445 0.83836 0.90749 1.25496 0.98115 1.00154 1.01728 1.70135 1.24386 1.29941 1.35245 0.85341 0.76952 0.77195 0.81002 1.20673 1.22408 1.20611 1.21872 0.99777 0.93441 1.00258 1.21850 0.79801 0.98175 1.01634 0.92547 0.88993 0.92679 0.91256 0.88911 0.92676 0.92620 0.88681 0.91839 0.91942 0.86213 0.91919 0.93120 0.93424 0.90972 0.89528 0.90470 0.92087 0.99081 0.94403 0.94700 0.91062 0.89204 0.88235 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 7.76 71.98 0.56 -1.51 16 2 C -0.09 -1.65 0.76 -52.93 -0.04 -1.69 16 3 C -0.14 -2.16 8.29 71.98 0.60 -1.57 16 4 C -0.14 -2.20 8.29 71.98 0.60 -1.60 16 5 C 0.36 8.67 5.87 28.60 0.17 8.84 16 6 O -0.43 -11.92 12.81 -1.53 -0.02 -11.94 16 7 C 0.47 12.57 7.36 87.16 0.64 13.22 16 8 O -0.52 -14.54 12.90 -3.31 -0.04 -14.58 16 9 N -0.58 -15.98 2.97 -820.09 -2.43 -18.41 16 10 C 0.08 2.58 6.01 86.51 0.52 3.10 16 11 C -0.11 -3.72 4.92 30.82 0.15 -3.57 16 12 C -0.09 -2.91 1.93 -10.76 -0.02 -2.94 16 13 C 0.16 6.05 2.91 45.34 0.13 6.18 16 14 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 15 C -0.12 -3.73 5.29 31.78 0.17 -3.56 16 16 C -0.14 -5.03 7.08 31.99 0.23 -4.80 16 17 C 0.18 8.58 5.50 86.86 0.48 9.05 16 18 N -0.61 -29.84 2.43 -668.26 -1.63 -31.46 16 19 C -0.22 -12.16 9.79 84.03 0.82 -11.33 16 20 H 0.07 3.93 7.83 -2.91 -0.02 3.90 16 21 C -0.06 -3.48 5.48 84.86 0.46 -3.02 16 22 N -0.95 -56.56 10.42 21.65 0.23 -56.33 16 23 Si 0.97 45.88 29.55 68.60 2.03 47.90 16 24 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 25 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 26 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 27 C -0.11 -2.93 5.15 30.67 0.16 -2.77 16 28 C 0.11 2.63 6.44 86.36 0.56 3.18 16 29 H 0.06 0.94 8.10 -2.38 -0.02 0.92 16 30 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 32 H 0.07 1.30 6.19 -2.39 -0.01 1.29 16 33 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 1.19 6.70 -2.39 -0.02 1.17 16 38 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.12 3.78 4.33 -46.61 -0.20 3.58 16 40 H 0.06 2.11 5.97 -2.39 -0.01 2.09 16 41 H 0.05 2.25 7.63 -2.39 -0.02 2.23 16 42 H 0.05 1.82 7.94 -2.39 -0.02 1.80 16 43 H 0.07 2.24 5.47 -2.39 -0.01 2.23 16 44 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 46 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 47 H -0.01 -0.47 8.13 -2.39 -0.02 -0.49 16 48 H 0.04 2.12 6.62 -2.39 -0.02 2.10 16 49 H 0.24 14.34 8.31 -92.71 -0.77 13.57 16 50 H 0.07 1.77 7.35 -2.39 -0.02 1.75 16 51 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 52 H 0.10 2.31 7.00 -2.39 -0.02 2.29 16 53 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -64.93 394.63 5.00 -59.93 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.69 Total: 19.70 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 6.18 Total: 5.20 kcal Atomic # 7 Polarization: -102.37 SS G_CDS: -3.83 Total: -106.21 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.06 Total: -26.52 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -64.93 5.00 -59.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004397731.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.124 kcal (2) G-P(sol) polarization free energy of solvation -64.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds