Wall clock time and date at job start Tue Mar 31 2020 19:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47203 * 2 1 4 4 C 1.52994 * 109.47324 * 239.99393 * 2 1 3 5 5 C 1.50707 * 109.47108 * 119.99484 * 2 1 3 6 6 O 1.20781 * 119.99656 * 355.29172 * 5 2 1 7 7 C 1.49082 * 120.00212 * 175.29332 * 5 2 1 8 8 O 1.21369 * 120.00134 * 8.42191 * 7 5 2 9 9 N 1.34770 * 120.00201 * 188.42231 * 7 5 2 10 10 C 1.46933 * 120.63234 * 7.35917 * 9 7 5 11 11 C 1.53195 * 108.77136 * 126.41156 * 10 9 7 12 12 C 1.53039 * 109.31061 * 54.64113 * 11 10 9 13 13 C 1.53072 * 109.66169 * 298.69488 * 12 11 10 14 14 C 1.46924 * 120.63294 * 187.38567 * 9 7 5 15 15 H 1.09004 * 109.59181 * 113.65518 * 14 9 7 16 16 C 1.53006 * 109.58604 * 353.37297 * 14 9 7 17 17 H 1.08995 * 109.87363 * 42.63514 * 16 14 9 18 18 C 1.54327 * 109.88152 * 163.64950 * 16 14 9 19 19 C 1.55160 * 102.93731 * 141.60842 * 18 16 14 20 20 C 1.54901 * 101.58638 * 324.49720 * 19 18 16 21 21 N 1.47184 * 109.79364 * 281.43520 * 16 14 9 22 22 C 1.36932 * 125.73946 * 61.64601 * 21 16 14 23 23 H 1.08009 * 119.99871 * 3.12107 * 22 21 16 24 24 C 1.38813 * 120.00473 * 183.12145 * 22 21 16 25 25 N 1.31619 * 119.99600 * 5.59017 * 24 22 21 26 26 Si 1.86800 * 120.00186 * 185.59281 * 24 22 21 27 27 H 1.48500 * 109.46918 * 65.03441 * 26 24 22 28 28 H 1.48500 * 109.46929 * 185.03227 * 26 24 22 29 29 H 1.48493 * 109.47227 * 305.03525 * 26 24 22 30 30 H 1.08992 * 109.47213 * 300.00184 * 1 2 3 31 31 H 1.08995 * 109.46881 * 60.00689 * 1 2 3 32 32 H 1.09003 * 109.47004 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47466 * 179.97438 * 3 2 1 34 34 H 1.09009 * 109.46561 * 299.99464 * 3 2 1 35 35 H 1.09000 * 109.47267 * 59.99166 * 3 2 1 36 36 H 1.08998 * 109.47499 * 304.76703 * 4 2 1 37 37 H 1.08998 * 109.47112 * 64.77067 * 4 2 1 38 38 H 1.09006 * 109.47051 * 184.76761 * 4 2 1 39 39 H 1.08991 * 109.58550 * 246.20316 * 10 9 7 40 40 H 1.08998 * 109.58272 * 6.48755 * 10 9 7 41 41 H 1.09009 * 109.49148 * 174.58690 * 11 10 9 42 42 H 1.08993 * 109.50142 * 294.68869 * 11 10 9 43 43 H 1.09002 * 109.46289 * 58.65465 * 12 11 10 44 44 H 1.09006 * 109.45792 * 178.61646 * 12 11 10 45 45 H 1.09007 * 109.38480 * 301.28008 * 13 12 11 46 46 H 1.09001 * 109.62439 * 181.17146 * 13 12 11 47 47 H 1.08995 * 110.72051 * 23.25084 * 18 16 14 48 48 H 1.08995 * 110.87083 * 260.04130 * 18 16 14 49 49 H 1.09003 * 111.00252 * 206.41820 * 19 18 16 50 50 H 1.09005 * 111.03334 * 82.58981 * 19 18 16 51 51 H 1.09000 * 110.36823 * 155.84810 * 20 19 18 52 52 H 1.08997 * 110.36786 * 278.06248 * 20 19 18 53 53 H 0.97000 * 120.00096 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0324 -0.7103 1.2306 6 8 1.2508 -1.0943 2.0675 7 6 3.4940 -0.9390 1.4149 8 8 4.2893 -0.4233 0.6568 9 7 3.9323 -1.7184 2.4232 10 6 2.9836 -2.4776 3.2494 11 6 3.4032 -3.9509 3.2541 12 6 4.8604 -4.0607 3.7087 13 6 5.7633 -3.3046 2.7309 14 6 5.3678 -1.8247 2.7177 15 1 5.5747 -1.3825 3.6923 16 6 6.1681 -1.0895 1.6407 17 1 5.6868 -0.1405 1.4044 18 6 7.6079 -0.8386 2.1363 19 6 8.4598 -1.0698 0.8602 20 6 7.6815 -2.2177 0.1703 21 7 6.2606 -1.9239 0.4317 22 6 5.2042 -2.3540 -0.3260 23 1 4.2003 -2.0403 -0.0803 24 6 5.4235 -3.1930 -1.4099 25 7 6.6301 -3.6637 -1.6442 26 14 4.0062 -3.6539 -2.5360 27 1 3.5156 -2.4399 -3.2365 28 1 4.4717 -4.6483 -3.5359 29 1 2.9046 -4.2399 -1.7309 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6087 -1.7214 -1.2928 37 1 1.7482 -0.1606 -2.1371 38 1 3.1268 -0.7959 -1.2074 39 1 2.9956 -2.0909 4.2683 40 1 1.9802 -2.3825 2.8343 41 1 2.7652 -4.5086 3.9398 42 1 3.3038 -4.3607 2.2490 43 1 4.9639 -3.6283 4.7040 44 1 5.1540 -5.1101 3.7365 45 1 5.6436 -3.7221 1.7311 46 1 6.8031 -3.4005 3.0437 47 1 7.8778 -1.5523 2.9146 48 1 7.7221 0.1839 2.4962 49 1 9.4716 -1.3832 1.1174 50 1 8.4767 -0.1777 0.2341 51 1 7.8777 -2.2183 -0.9019 52 1 7.9567 -3.1781 0.6061 53 1 6.7833 -4.2503 -2.4014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025211202.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:05 Heat of formation + Delta-G solvation = 4.324580 kcal Electronic energy + Delta-G solvation = -33980.152422 eV Core-core repulsion = 30047.833742 eV Total energy + Delta-G solvation = -3932.318679 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.48397 -40.59541 -38.63779 -38.14475 -36.69611 -34.39010 -33.61269 -32.46733 -30.87809 -28.94113 -28.37787 -28.23894 -27.13101 -26.27811 -25.23519 -24.13852 -22.50745 -21.81914 -21.14467 -20.54390 -19.47402 -18.82846 -17.99521 -17.52291 -17.02263 -16.41316 -16.39865 -16.13432 -15.92864 -15.45072 -15.32439 -15.17547 -14.80494 -14.61313 -14.37225 -14.17763 -14.01203 -13.60819 -13.53238 -13.46332 -13.29709 -13.06246 -13.00651 -12.88630 -12.78816 -12.74189 -12.55040 -12.37936 -12.19147 -12.06939 -11.92542 -11.86166 -11.81665 -11.60649 -11.48883 -11.44636 -11.18153 -10.88223 -10.81707 -10.43714 -9.52231 -9.25832 -8.45740 -7.59597 -4.86286 0.01213 1.38608 1.42379 1.45869 1.76721 2.15318 2.60123 3.00282 3.48766 3.60167 3.83093 3.86923 3.89723 3.93056 4.01185 4.06844 4.22931 4.27446 4.31036 4.38751 4.42612 4.48763 4.60758 4.64203 4.67843 4.72715 4.82306 4.84019 4.91643 4.92117 4.93348 4.95080 5.01444 5.02293 5.07178 5.13819 5.20360 5.20851 5.26152 5.28360 5.32402 5.35771 5.38557 5.59491 5.76432 5.80655 5.86022 5.90442 5.97900 6.06403 6.47123 6.51498 7.18194 7.35808 8.08268 8.72922 9.50138 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009742 B = 0.007090 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.475780 B = 3948.105522 C = 4853.424525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 C -0.133 4.133 4 C -0.154 4.154 5 C 0.360 3.640 6 O -0.426 6.426 7 C 0.447 3.553 8 O -0.466 6.466 9 N -0.577 5.577 10 C 0.075 3.925 11 C -0.130 4.130 12 C -0.111 4.111 13 C -0.119 4.119 14 C 0.138 3.862 15 H 0.087 0.913 16 C 0.128 3.872 17 H 0.089 0.911 18 C -0.121 4.121 19 C -0.133 4.133 20 C 0.169 3.831 21 N -0.585 5.585 22 C -0.157 4.157 23 H 0.105 0.895 24 C -0.091 4.091 25 N -0.961 5.961 26 Si 0.926 3.074 27 H -0.271 1.271 28 H -0.311 1.311 29 H -0.287 1.287 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.040 0.960 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.117 0.883 41 H 0.096 0.904 42 H 0.033 0.967 43 H 0.080 0.920 44 H 0.058 0.942 45 H 0.049 0.951 46 H 0.059 0.941 47 H 0.070 0.930 48 H 0.083 0.917 49 H 0.074 0.926 50 H 0.054 0.946 51 H 0.044 0.956 52 H -0.014 1.014 53 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.529 7.982 11.606 16.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.093 4.093 3 C -0.191 4.191 4 C -0.211 4.211 5 C 0.233 3.767 6 O -0.298 6.298 7 C 0.232 3.768 8 O -0.342 6.342 9 N -0.311 5.311 10 C -0.046 4.046 11 C -0.168 4.168 12 C -0.149 4.149 13 C -0.157 4.157 14 C 0.034 3.966 15 H 0.105 0.895 16 C 0.022 3.978 17 H 0.106 0.894 18 C -0.159 4.159 19 C -0.172 4.172 20 C 0.043 3.957 21 N -0.307 5.307 22 C -0.287 4.287 23 H 0.122 0.878 24 C -0.281 4.281 25 N -0.616 5.616 26 Si 0.758 3.242 27 H -0.197 1.197 28 H -0.239 1.239 29 H -0.214 1.214 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.134 0.866 41 H 0.115 0.885 42 H 0.052 0.948 43 H 0.099 0.901 44 H 0.077 0.923 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.088 0.912 48 H 0.102 0.898 49 H 0.092 0.908 50 H 0.073 0.927 51 H 0.062 0.938 52 H 0.004 0.996 53 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -8.604 7.944 11.487 16.404 hybrid contribution -0.133 -1.257 -1.291 1.807 sum -8.737 6.686 10.196 15.000 Atomic orbital electron populations 1.21761 0.90620 1.02559 1.03674 1.20989 0.98387 0.97797 0.92109 1.21823 1.02223 0.91387 1.03617 1.22075 1.02772 0.99403 0.96864 1.25414 0.88727 0.75166 0.87409 1.90101 1.59108 1.38228 1.42344 1.20843 0.90786 0.82934 0.82212 1.90825 1.53708 1.49156 1.40554 1.48096 1.08111 1.43892 1.31025 1.22730 0.94696 0.90846 0.96300 1.21882 0.97536 0.96413 1.00983 1.21498 0.94325 1.00117 0.98939 1.21766 0.98581 0.95236 1.00121 1.22077 0.78928 0.96629 0.98955 0.89502 1.22302 0.93975 0.96201 0.85327 0.89431 1.22661 0.94605 1.01702 0.96976 1.22821 0.98450 0.98774 0.97145 1.21361 0.83777 0.92256 0.98268 1.44526 1.01766 1.57609 1.26796 1.20006 0.89251 1.16214 1.03249 0.87788 1.25313 0.97581 1.02914 1.02283 1.70122 1.20458 1.39773 1.31261 0.85894 0.80340 0.77719 0.80198 1.19743 1.23874 1.21362 0.91204 0.89552 0.93004 0.92029 0.89484 0.91390 0.94109 0.89602 0.91706 0.89474 0.86592 0.88542 0.94795 0.90133 0.92284 0.93200 0.92206 0.91162 0.89842 0.90752 0.92726 0.93796 0.99626 0.95961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 7.78 71.98 0.56 -2.25 16 2 C -0.09 -2.50 0.76 -52.93 -0.04 -2.54 16 3 C -0.13 -3.17 8.33 71.98 0.60 -2.57 16 4 C -0.15 -5.04 8.02 71.98 0.58 -4.46 16 5 C 0.36 11.35 5.87 28.60 0.17 11.52 16 6 O -0.43 -12.98 12.80 -1.51 -0.02 -13.00 16 7 C 0.45 16.20 5.14 87.16 0.45 16.65 16 8 O -0.47 -19.14 6.36 -3.31 -0.02 -19.16 16 9 N -0.58 -19.54 2.85 -797.03 -2.27 -21.82 16 10 C 0.08 2.13 6.00 86.36 0.52 2.65 16 11 C -0.13 -3.67 6.08 30.67 0.19 -3.48 16 12 C -0.11 -3.13 5.88 30.63 0.18 -2.95 16 13 C -0.12 -4.27 4.93 30.68 0.15 -4.12 16 14 C 0.14 4.71 2.49 44.98 0.11 4.82 16 15 H 0.09 2.48 8.05 -2.38 -0.02 2.46 16 16 C 0.13 5.02 2.32 45.31 0.11 5.12 16 17 H 0.09 3.70 5.05 -70.03 -0.35 3.35 16 18 C -0.12 -3.98 6.32 31.78 0.20 -3.78 16 19 C -0.13 -5.04 7.08 31.98 0.23 -4.82 16 20 C 0.17 8.40 5.65 86.85 0.49 8.89 16 21 N -0.58 -28.58 1.90 -667.87 -1.27 -29.85 16 22 C -0.16 -8.43 7.06 84.03 0.59 -7.83 16 23 H 0.11 5.30 2.69 -4.21 -0.01 5.29 16 24 C -0.09 -5.31 5.46 84.86 0.46 -4.84 16 25 N -0.96 -59.61 10.28 21.65 0.22 -59.39 16 26 Si 0.93 47.40 29.18 68.60 2.00 49.40 16 27 H -0.27 -13.10 7.11 99.48 0.71 -12.40 16 28 H -0.31 -16.59 7.11 99.48 0.71 -15.88 16 29 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 30 H 0.07 1.39 8.05 -2.39 -0.02 1.37 16 31 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 1.77 6.53 -2.39 -0.02 1.75 16 34 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.09 2.38 8.14 -2.39 -0.02 2.37 16 38 H 0.06 2.63 4.91 -2.38 -0.01 2.61 16 39 H 0.09 2.01 8.14 -2.39 -0.02 2.00 16 40 H 0.12 3.43 4.29 -49.61 -0.21 3.22 16 41 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 42 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 45 H 0.05 2.38 6.16 -2.38 -0.01 2.36 16 46 H 0.06 2.10 7.30 -2.39 -0.02 2.08 16 47 H 0.07 2.11 6.97 -2.39 -0.02 2.10 16 48 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 49 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 50 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 51 H 0.04 2.55 6.30 -2.39 -0.02 2.54 16 52 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 53 H 0.23 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -67.28 376.62 4.53 -62.75 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.35 Total: 25.07 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 5.54 Total: 6.01 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: -3.32 Total: -111.06 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.04 Total: -32.17 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.00 Total: 49.40 kcal Total: -67.28 4.53 -62.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025211202.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.070 kcal (2) G-P(sol) polarization free energy of solvation -67.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds