Wall clock time and date at job start Tue Mar 31 2020 19:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47160 * 2 1 4 4 C 1.53001 * 109.46693 * 240.00398 * 2 1 3 5 5 C 1.50693 * 109.47566 * 120.00177 * 2 1 3 6 6 O 1.20783 * 119.99775 * 7.18504 * 5 2 1 7 7 C 1.49085 * 120.00662 * 187.17811 * 5 2 1 8 8 O 1.21371 * 119.99653 * 7.38065 * 7 5 2 9 9 N 1.34769 * 120.00359 * 187.37578 * 7 5 2 10 10 C 1.46926 * 120.63190 * 9.00310 * 9 7 5 11 11 C 1.53190 * 108.77495 * 233.58485 * 10 9 7 12 12 C 1.53036 * 109.31366 * 305.36308 * 11 10 9 13 13 C 1.53041 * 109.53709 * 61.36726 * 12 11 10 14 14 C 1.46927 * 120.62891 * 188.98145 * 9 7 5 15 15 H 1.09007 * 109.70097 * 246.27042 * 14 9 7 16 16 C 1.52996 * 109.59038 * 6.62519 * 14 9 7 17 17 H 1.08999 * 109.87196 * 311.74021 * 16 14 9 18 18 C 1.54320 * 109.88380 * 190.72421 * 16 14 9 19 19 C 1.55159 * 102.94100 * 218.23754 * 18 16 14 20 20 C 1.54908 * 101.58560 * 35.50014 * 19 18 16 21 21 N 1.47026 * 110.00935 * 72.84053 * 16 14 9 22 22 C 1.36942 * 125.64420 * 298.38100 * 21 16 14 23 23 H 1.08004 * 119.99725 * 47.39205 * 22 21 16 24 24 C 1.38804 * 120.00020 * 227.38216 * 22 21 16 25 25 N 1.31624 * 120.00062 * 203.87222 * 24 22 21 26 26 Si 1.86799 * 120.00304 * 23.87940 * 24 22 21 27 27 H 1.48498 * 109.47361 * 87.64777 * 26 24 22 28 28 H 1.48500 * 109.47467 * 207.65588 * 26 24 22 29 29 H 1.48508 * 109.46771 * 327.65249 * 26 24 22 30 30 H 1.09003 * 109.46701 * 299.99898 * 1 2 3 31 31 H 1.08995 * 109.47220 * 59.99422 * 1 2 3 32 32 H 1.08995 * 109.47507 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46934 * 188.47954 * 3 2 1 34 34 H 1.08995 * 109.47325 * 308.48001 * 3 2 1 35 35 H 1.09000 * 109.46785 * 68.48369 * 3 2 1 36 36 H 1.08998 * 109.47434 * 299.99575 * 4 2 1 37 37 H 1.08994 * 109.47624 * 59.99921 * 4 2 1 38 38 H 1.09009 * 109.47028 * 180.02562 * 4 2 1 39 39 H 1.09004 * 109.58637 * 113.80041 * 10 9 7 40 40 H 1.08997 * 109.58656 * 353.37192 * 10 9 7 41 41 H 1.09000 * 109.49562 * 185.41368 * 11 10 9 42 42 H 1.08995 * 109.49762 * 65.31929 * 11 10 9 43 43 H 1.08994 * 109.46452 * 301.34554 * 12 11 10 44 44 H 1.09003 * 109.44627 * 181.37808 * 12 11 10 45 45 H 1.09002 * 109.49547 * 178.67943 * 13 12 11 46 46 H 1.08997 * 109.52220 * 58.60163 * 13 12 11 47 47 H 1.08998 * 110.72083 * 336.59945 * 18 16 14 48 48 H 1.08999 * 110.72068 * 99.87417 * 18 16 14 49 49 H 1.09002 * 111.00517 * 153.57918 * 19 18 16 50 50 H 1.09008 * 111.00256 * 277.39074 * 19 18 16 51 51 H 1.09002 * 110.36573 * 81.82879 * 20 19 18 52 52 H 1.08995 * 110.37115 * 204.04567 * 20 19 18 53 53 H 0.96999 * 120.00140 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 8 1.2553 -1.2814 1.9576 7 6 3.4886 -0.7086 1.5499 8 8 4.2521 -0.0265 0.8980 9 7 3.9573 -1.4643 2.5626 10 6 3.0876 -2.4408 3.2327 11 6 3.1150 -2.1722 4.7406 12 6 4.5649 -2.1819 5.2302 13 6 5.3497 -1.0717 4.5276 14 6 5.3477 -1.3277 3.0173 15 1 5.8967 -2.2443 2.8013 16 6 6.0098 -0.1516 2.2968 17 1 5.8184 -0.2179 1.2258 18 6 7.5304 -0.1636 2.5599 19 6 7.8692 1.3433 2.7084 20 6 6.5997 1.8794 3.4160 21 7 5.4862 1.1185 2.8207 22 6 4.1805 1.5274 2.7640 23 1 3.3897 0.8508 3.0528 24 6 3.8733 2.8114 2.3355 25 7 2.7419 3.3749 2.7029 26 14 5.0655 3.7399 1.2372 27 1 4.7866 3.4126 -0.1842 28 1 4.9006 5.2002 1.4506 29 1 6.4573 3.3448 1.5722 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1194 1.4462 -0.1515 34 1 1.5583 1.9982 -0.8044 35 1 1.8057 1.9106 0.9561 36 1 1.6766 -1.7488 -1.2494 37 1 1.6766 -0.2074 -2.1393 38 1 3.1300 -0.7216 -1.2492 39 1 3.4501 -3.4495 3.0345 40 1 2.0680 -2.3372 2.8615 41 1 2.5509 -2.9479 5.2585 42 1 2.6684 -1.1992 4.9450 43 1 5.0184 -3.1467 5.0033 44 1 4.5853 -2.0154 6.3072 45 1 6.3763 -1.0641 4.8940 46 1 4.8826 -0.1088 4.7340 47 1 7.7584 -0.7025 3.4795 48 1 8.0646 -0.5975 1.7147 49 1 8.7529 1.4856 3.3305 50 1 8.0010 1.8120 1.7331 51 1 6.6559 1.6930 4.4884 52 1 6.4792 2.9453 3.2226 53 1 2.5271 4.2720 2.4032 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025211203.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:09 Heat of formation + Delta-G solvation = -7.280222 kcal Electronic energy + Delta-G solvation = -34275.420303 eV Core-core repulsion = 30342.598402 eV Total energy + Delta-G solvation = -3932.821901 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.31154 -40.51627 -38.47496 -38.17665 -36.60718 -34.46682 -33.49575 -32.52715 -31.55001 -28.99975 -28.30384 -28.10709 -27.14969 -25.97093 -25.14655 -24.15400 -22.48838 -22.02621 -21.14375 -20.41797 -19.48007 -18.76909 -17.89068 -17.51523 -17.05158 -16.61807 -16.24396 -16.04012 -15.64023 -15.50130 -15.15108 -15.06328 -14.77187 -14.60945 -14.48207 -14.39542 -14.28893 -13.82778 -13.64281 -13.40262 -13.18943 -13.11465 -12.98134 -12.89443 -12.85081 -12.55735 -12.51763 -12.36134 -12.17144 -12.07455 -11.91508 -11.82811 -11.76914 -11.71588 -11.57810 -11.35322 -11.26828 -11.17560 -10.66126 -10.28905 -9.28712 -9.22597 -8.12020 -7.98333 -5.37524 0.18493 1.40890 1.48732 1.56962 1.89729 2.40983 2.62534 3.14812 3.28469 3.61384 3.65324 3.96787 3.97250 4.00013 4.04516 4.10292 4.19992 4.25610 4.30743 4.37263 4.39390 4.50346 4.58493 4.67595 4.71060 4.75338 4.84156 4.86844 4.91141 4.94961 4.98711 5.02414 5.05422 5.07512 5.10745 5.12499 5.13961 5.20402 5.24671 5.27689 5.28578 5.32434 5.38896 5.49995 5.60471 5.70982 5.77172 5.95555 6.17368 6.23223 6.40546 6.64897 7.17951 7.43499 7.80109 8.55139 9.18160 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009855 B = 0.008284 C = 0.005596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.616202 B = 3379.075707 C = 5002.154602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.093 4.093 3 C -0.137 4.137 4 C -0.128 4.128 5 C 0.367 3.633 6 O -0.439 6.439 7 C 0.488 3.512 8 O -0.477 6.477 9 N -0.588 5.588 10 C 0.058 3.942 11 C -0.124 4.124 12 C -0.111 4.111 13 C -0.116 4.116 14 C 0.141 3.859 15 H 0.084 0.916 16 C 0.109 3.891 17 H 0.093 0.907 18 C -0.119 4.119 19 C -0.124 4.124 20 C 0.118 3.882 21 N -0.597 5.597 22 C -0.182 4.182 23 H 0.038 0.962 24 C 0.012 3.988 25 N -0.941 5.941 26 Si 0.899 3.101 27 H -0.298 1.298 28 H -0.325 1.325 29 H -0.236 1.236 30 H 0.037 0.963 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.124 0.876 41 H 0.090 0.910 42 H 0.027 0.973 43 H 0.080 0.920 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.044 0.956 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.088 0.912 50 H 0.050 0.950 51 H 0.022 0.978 52 H 0.020 0.980 53 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.765 -14.071 -2.499 14.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.095 4.095 3 C -0.194 4.194 4 C -0.185 4.185 5 C 0.240 3.760 6 O -0.312 6.312 7 C 0.274 3.726 8 O -0.352 6.352 9 N -0.323 5.323 10 C -0.063 4.063 11 C -0.162 4.162 12 C -0.148 4.148 13 C -0.154 4.154 14 C 0.038 3.962 15 H 0.102 0.898 16 C 0.004 3.996 17 H 0.110 0.890 18 C -0.157 4.157 19 C -0.162 4.162 20 C -0.007 4.007 21 N -0.323 5.323 22 C -0.312 4.312 23 H 0.055 0.945 24 C -0.185 4.185 25 N -0.586 5.586 26 Si 0.730 3.270 27 H -0.226 1.226 28 H -0.254 1.254 29 H -0.160 1.160 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.140 0.860 41 H 0.108 0.892 42 H 0.046 0.954 43 H 0.098 0.902 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.063 0.937 47 H 0.098 0.902 48 H 0.099 0.901 49 H 0.107 0.893 50 H 0.069 0.931 51 H 0.040 0.960 52 H 0.038 0.962 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.597 -13.860 -2.471 14.531 hybrid contribution 0.058 1.596 -0.107 1.601 sum 3.655 -12.263 -2.578 13.054 Atomic orbital electron populations 1.21713 0.91493 1.02829 1.02323 1.20978 0.97909 0.96718 0.93888 1.21910 1.02129 0.93201 1.02151 1.21772 1.01581 1.00194 0.94970 1.25523 0.89591 0.74986 0.85857 1.89964 1.59311 1.35148 1.46765 1.20338 0.89692 0.80363 0.82245 1.90535 1.55273 1.39052 1.50325 1.48006 1.12921 1.38330 1.33070 1.22915 0.98521 0.91534 0.93350 1.21759 0.97839 1.00921 0.95661 1.21502 0.94679 0.99040 0.99621 1.21767 1.00466 0.98899 0.94301 1.21927 0.80623 0.99073 0.94624 0.89839 1.22427 0.91388 0.85791 0.99987 0.89021 1.22656 0.94981 0.95797 1.02251 1.22663 0.97050 0.96534 0.99981 1.21997 0.88646 0.94894 0.95131 1.44518 1.03763 1.18372 1.65622 1.17882 0.82242 0.96663 1.34417 0.94461 1.25833 0.95691 0.98454 0.98499 1.70000 1.27039 1.14592 1.46953 0.86624 0.83788 0.75251 0.81329 1.22587 1.25411 1.15995 0.94328 0.89781 0.91018 0.91885 0.92046 0.93156 0.91033 0.89512 0.92417 0.90113 0.85973 0.89164 0.95416 0.90164 0.91773 0.90617 0.93749 0.90158 0.90128 0.89326 0.93117 0.95982 0.96177 0.93874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 7.79 71.98 0.56 -3.21 16 2 C -0.09 -3.22 0.78 -52.93 -0.04 -3.26 16 3 C -0.14 -5.72 7.58 71.98 0.55 -5.17 16 4 C -0.13 -3.49 8.35 71.98 0.60 -2.88 16 5 C 0.37 14.18 5.86 28.60 0.17 14.35 16 6 O -0.44 -17.00 12.76 -1.52 -0.02 -17.02 16 7 C 0.49 19.73 4.32 87.16 0.38 20.11 16 8 O -0.48 -21.04 7.54 -3.31 -0.02 -21.07 16 9 N -0.59 -21.04 2.58 -797.06 -2.05 -23.10 16 10 C 0.06 1.76 6.24 86.36 0.54 2.30 16 11 C -0.12 -3.62 6.08 30.67 0.19 -3.43 16 12 C -0.11 -2.90 5.88 30.62 0.18 -2.72 16 13 C -0.12 -3.71 4.96 30.67 0.15 -3.56 16 14 C 0.14 4.65 2.55 44.97 0.11 4.77 16 15 H 0.08 2.31 8.12 -2.38 -0.02 2.29 16 16 C 0.11 4.08 2.32 45.34 0.11 4.18 16 17 H 0.09 3.92 5.00 -71.62 -0.36 3.56 16 18 C -0.12 -3.47 6.33 31.78 0.20 -3.27 16 19 C -0.12 -4.05 6.94 31.99 0.22 -3.83 16 20 C 0.12 4.91 6.01 86.86 0.52 5.43 16 21 N -0.60 -26.96 1.19 -668.29 -0.80 -27.76 16 22 C -0.18 -9.69 6.18 84.03 0.52 -9.17 16 23 H 0.04 2.23 5.86 -2.91 -0.02 2.21 16 24 C 0.01 0.65 4.24 84.86 0.36 1.01 16 25 N -0.94 -56.99 13.03 21.65 0.28 -56.70 16 26 Si 0.90 46.74 26.89 68.60 1.84 48.59 16 27 H -0.30 -15.83 7.11 99.48 0.71 -15.13 16 28 H -0.32 -17.60 7.11 99.48 0.71 -16.89 16 29 H -0.24 -11.39 4.40 99.48 0.44 -10.95 16 30 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.07 1.89 8.02 -2.39 -0.02 1.87 16 33 H 0.06 2.94 6.15 -2.39 -0.01 2.93 16 34 H 0.06 2.25 8.13 -2.39 -0.02 2.24 16 35 H 0.05 2.52 6.34 -2.39 -0.02 2.50 16 36 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.06 1.74 7.27 -2.38 -0.02 1.72 16 39 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.12 4.09 3.89 -72.21 -0.28 3.81 16 41 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.08 2.14 6.93 -2.39 -0.02 2.12 16 46 H 0.04 1.87 6.61 -2.39 -0.02 1.85 16 47 H 0.08 2.02 6.58 -2.39 -0.02 2.01 16 48 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 49 H 0.09 2.34 8.14 -2.39 -0.02 2.33 16 50 H 0.05 1.77 7.52 -2.38 -0.02 1.76 16 51 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 52 H 0.02 0.93 4.87 -2.39 -0.01 0.92 16 53 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -66.43 372.30 4.55 -61.87 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 0.01 Total: 23.54 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 5.31 Total: 11.65 kcal Atomic # 7 Polarization: -104.99 SS G_CDS: -2.57 Total: -107.56 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -0.04 Total: -38.08 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.84 Total: 48.59 kcal Total: -66.43 4.55 -61.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025211203.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.593 kcal (2) G-P(sol) polarization free energy of solvation -66.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds