Wall clock time and date at job start Tue Mar 31 2020 19:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47461 * 2 1 4 4 C 1.52999 * 109.47239 * 239.99825 * 2 1 3 5 5 C 1.50708 * 109.47106 * 119.99927 * 2 1 3 6 6 O 1.20782 * 119.99797 * 355.24344 * 5 2 1 7 7 C 1.49089 * 120.00195 * 175.24268 * 5 2 1 8 8 O 1.21367 * 119.99724 * 8.90096 * 7 5 2 9 9 N 1.34771 * 119.99795 * 188.90433 * 7 5 2 10 10 C 1.46928 * 120.63444 * 8.33337 * 9 7 5 11 11 C 1.53188 * 108.78165 * 233.58969 * 10 9 7 12 12 C 1.53042 * 109.31181 * 305.36931 * 11 10 9 13 13 C 1.53039 * 109.53943 * 61.35968 * 12 11 10 14 14 C 1.46930 * 120.63103 * 188.32140 * 9 7 5 15 15 H 1.08997 * 109.70290 * 246.26940 * 14 9 7 16 16 C 1.53004 * 109.58356 * 6.61779 * 14 9 7 17 17 H 1.08995 * 109.87876 * 302.33094 * 16 14 9 18 18 C 1.54327 * 109.88034 * 63.34517 * 16 14 9 19 19 C 1.55155 * 103.10390 * 141.51854 * 18 16 14 20 20 C 1.55129 * 101.48657 * 324.72055 * 19 18 16 21 21 N 1.47019 * 109.88253 * 181.14835 * 16 14 9 22 22 C 1.36946 * 125.64270 * 61.68122 * 21 16 14 23 23 H 1.07993 * 119.99883 * 6.06892 * 22 21 16 24 24 C 1.38810 * 119.99658 * 186.06624 * 22 21 16 25 25 N 1.31623 * 120.00333 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99869 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47187 * 90.00028 * 26 24 22 28 28 H 1.48504 * 109.47226 * 210.00048 * 26 24 22 29 29 H 1.48499 * 109.47005 * 329.99970 * 26 24 22 30 30 H 1.08993 * 109.47064 * 300.00344 * 1 2 3 31 31 H 1.08998 * 109.46411 * 60.00237 * 1 2 3 32 32 H 1.09001 * 109.46782 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46896 * 185.05195 * 3 2 1 34 34 H 1.08995 * 109.47115 * 305.05488 * 3 2 1 35 35 H 1.09008 * 109.46800 * 65.05503 * 3 2 1 36 36 H 1.09001 * 109.47516 * 299.99896 * 4 2 1 37 37 H 1.08998 * 109.47470 * 60.00586 * 4 2 1 38 38 H 1.09006 * 109.47039 * 180.02562 * 4 2 1 39 39 H 1.09007 * 109.58238 * 113.79895 * 10 9 7 40 40 H 1.09002 * 109.70035 * 353.45406 * 10 9 7 41 41 H 1.08990 * 109.49871 * 185.41337 * 11 10 9 42 42 H 1.09001 * 109.51902 * 65.33141 * 11 10 9 43 43 H 1.08997 * 109.45913 * 301.34234 * 12 11 10 44 44 H 1.08997 * 109.44547 * 181.37773 * 12 11 10 45 45 H 1.09004 * 109.49608 * 178.67788 * 13 12 11 46 46 H 1.09004 * 109.52040 * 58.60622 * 13 12 11 47 47 H 1.08997 * 110.72300 * 259.97578 * 18 16 14 48 48 H 1.09000 * 110.71959 * 23.07005 * 18 16 14 49 49 H 1.08999 * 111.00352 * 82.65865 * 19 18 16 50 50 H 1.08999 * 111.01007 * 206.51827 * 19 18 16 51 51 H 1.09007 * 110.20233 * 277.95833 * 20 19 18 52 52 H 1.08992 * 110.51421 * 155.75004 * 20 19 18 53 53 H 0.96994 * 120.00257 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 8 1.2508 -1.0937 2.0679 7 6 3.4939 -0.9401 1.4143 8 8 4.2896 -0.4182 0.6610 9 7 3.9315 -1.7275 2.4167 10 6 2.9841 -2.5100 3.2222 11 6 3.2166 -2.1935 4.7029 12 6 4.6874 -2.4388 5.0480 13 6 5.5711 -1.5111 4.2110 14 6 5.3652 -1.8199 2.7248 15 1 5.7236 -2.8260 2.5076 16 6 6.1380 -0.8063 1.8784 17 1 5.9517 -0.9885 0.8201 18 6 5.7024 0.6272 2.2487 19 6 7.0319 1.4249 2.1907 20 6 8.0463 0.3729 2.7110 21 7 7.5768 -0.9120 2.1616 22 6 8.3525 -2.0205 1.9493 23 1 7.9364 -2.8832 1.4504 24 6 9.6735 -2.0350 2.3754 25 7 10.1807 -0.9832 2.9829 26 14 10.7319 -3.5466 2.0852 27 1 11.4165 -3.4271 0.7729 28 1 11.7461 -3.6554 3.1645 29 1 9.8744 -4.7590 2.0876 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1263 1.4437 -0.0905 34 1 1.6048 1.9818 -0.8412 35 1 1.7526 1.9295 0.9319 36 1 1.6768 -1.7490 -1.2492 37 1 1.6768 -0.2075 -2.1392 38 1 3.1301 -0.7217 -1.2489 39 1 3.1460 -3.5735 3.0460 40 1 1.9628 -2.2456 2.9480 41 1 2.5867 -2.8379 5.3160 42 1 2.9668 -1.1502 4.8960 43 1 4.9429 -3.4761 4.8318 44 1 4.8501 -2.2378 6.1068 45 1 6.6169 -1.6698 4.4742 46 1 5.2997 -0.4739 4.4082 47 1 4.9888 1.0136 1.5210 48 1 5.2799 0.6546 3.2531 49 1 7.2665 1.7194 1.1678 50 1 6.9951 2.2942 2.8472 51 1 8.0354 0.3462 3.8006 52 1 9.0492 0.5970 2.3476 53 1 11.1037 -0.9935 3.2809 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025211204.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:12 Heat of formation + Delta-G solvation = -19.997789 kcal Electronic energy + Delta-G solvation = -32796.663741 eV Core-core repulsion = 28863.290365 eV Total energy + Delta-G solvation = -3933.373376 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.53804 -40.68640 -38.77017 -38.26406 -36.70375 -34.51716 -33.76467 -32.56185 -31.14085 -28.98237 -28.23174 -28.18958 -27.15900 -26.45848 -25.31399 -24.34589 -22.57214 -22.13704 -21.43520 -20.33657 -19.51408 -18.94263 -17.77414 -17.40244 -17.13453 -16.76930 -16.35150 -16.28112 -15.91588 -15.64111 -15.45221 -15.17676 -14.92222 -14.70789 -14.53323 -14.33471 -14.08323 -13.87219 -13.51583 -13.43782 -13.13472 -13.04447 -13.00682 -12.96805 -12.78338 -12.71529 -12.62387 -12.51964 -12.24880 -12.05329 -11.97940 -11.88324 -11.80349 -11.77716 -11.71801 -11.44684 -11.23893 -11.20512 -10.94132 -10.64357 -9.71293 -9.48420 -8.72884 -7.76457 -5.14393 -0.08512 1.44770 1.46060 1.54243 1.65330 1.95813 2.51561 2.90423 3.36300 3.47944 3.74271 3.86307 3.89227 3.91521 3.93134 3.97112 4.09007 4.19636 4.29814 4.31944 4.34103 4.39763 4.54881 4.62618 4.70199 4.76125 4.77981 4.86559 4.87912 4.89636 4.93226 4.98238 4.98575 5.01584 5.05120 5.06785 5.16482 5.20584 5.22502 5.26245 5.30283 5.37823 5.42321 5.47223 5.49428 5.54256 5.70469 5.76859 5.84282 6.00828 6.29535 6.40915 6.98435 7.16585 7.85806 8.52294 9.29641 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014702 B = 0.004158 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.040414 B = 6731.709643 C = 7361.895771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.090 4.090 3 C -0.140 4.140 4 C -0.143 4.143 5 C 0.371 3.629 6 O -0.419 6.419 7 C 0.455 3.545 8 O -0.499 6.499 9 N -0.578 5.578 10 C 0.055 3.945 11 C -0.118 4.118 12 C -0.118 4.118 13 C -0.111 4.111 14 C 0.142 3.858 15 H 0.047 0.953 16 C 0.160 3.840 17 H 0.061 0.939 18 C -0.112 4.112 19 C -0.138 4.138 20 C 0.173 3.827 21 N -0.610 5.610 22 C -0.225 4.225 23 H 0.072 0.928 24 C -0.062 4.062 25 N -0.947 5.947 26 Si 0.969 3.031 27 H -0.289 1.289 28 H -0.295 1.295 29 H -0.272 1.272 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.145 0.855 41 H 0.098 0.902 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.046 0.954 46 H 0.061 0.939 47 H 0.093 0.907 48 H 0.058 0.942 49 H 0.055 0.945 50 H 0.075 0.925 51 H -0.012 1.012 52 H 0.052 0.948 53 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.594 1.915 -2.611 22.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.092 4.092 3 C -0.197 4.197 4 C -0.200 4.200 5 C 0.243 3.757 6 O -0.290 6.290 7 C 0.241 3.759 8 O -0.376 6.376 9 N -0.312 5.312 10 C -0.066 4.066 11 C -0.156 4.156 12 C -0.155 4.155 13 C -0.149 4.149 14 C 0.037 3.963 15 H 0.065 0.935 16 C 0.054 3.946 17 H 0.079 0.921 18 C -0.150 4.150 19 C -0.176 4.176 20 C 0.048 3.952 21 N -0.334 5.334 22 C -0.355 4.355 23 H 0.089 0.911 24 C -0.255 4.255 25 N -0.597 5.597 26 Si 0.799 3.201 27 H -0.216 1.216 28 H -0.221 1.221 29 H -0.197 1.197 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.162 0.838 41 H 0.117 0.883 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.065 0.935 46 H 0.079 0.921 47 H 0.111 0.889 48 H 0.076 0.924 49 H 0.074 0.926 50 H 0.094 0.906 51 H 0.006 0.994 52 H 0.070 0.930 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -22.400 1.892 -2.519 22.620 hybrid contribution 1.654 -1.019 0.317 1.968 sum -20.746 0.873 -2.202 20.881 Atomic orbital electron populations 1.21779 0.90594 1.02957 1.03486 1.21022 0.98351 0.97369 0.92452 1.21882 1.02391 0.92126 1.03330 1.21916 1.02071 1.00084 0.95913 1.25298 0.87566 0.75182 0.87624 1.90025 1.58581 1.38750 1.41693 1.21177 0.91320 0.81107 0.82308 1.90704 1.54978 1.48408 1.43516 1.48412 1.07674 1.43365 1.31798 1.23112 0.96574 0.95400 0.91486 1.21786 0.95907 1.02510 0.95414 1.21553 0.95278 0.99038 0.99660 1.21721 0.99509 0.99768 0.93922 1.21814 0.78734 0.99643 0.96124 0.93517 1.21695 0.82338 0.93436 0.97168 0.92145 1.22946 0.97128 0.94401 1.00479 1.22923 0.96413 0.97811 1.00462 1.21403 0.96341 0.84059 0.93441 1.44885 1.03834 1.10678 1.74048 1.19253 0.92857 0.93181 1.30168 0.91059 1.25491 0.98558 1.00353 1.01077 1.70134 1.13904 1.29712 1.45963 0.85207 0.78581 0.79612 0.76743 1.21578 1.22111 1.19727 0.92095 0.89428 0.92177 0.91876 0.89082 0.92456 0.92348 0.89153 0.92244 0.91574 0.83848 0.88325 0.91975 0.92362 0.91005 0.93507 0.92100 0.88882 0.92366 0.92577 0.90611 0.99412 0.93018 0.94595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 7.78 71.98 0.56 -1.23 16 2 C -0.09 -1.62 0.76 -52.92 -0.04 -1.66 16 3 C -0.14 -2.43 8.27 71.98 0.60 -1.83 16 4 C -0.14 -2.52 8.24 71.98 0.59 -1.92 16 5 C 0.37 8.62 5.89 28.61 0.17 8.79 16 6 O -0.42 -9.79 12.79 -1.52 -0.02 -9.81 16 7 C 0.46 13.44 6.46 87.16 0.56 14.00 16 8 O -0.50 -16.77 6.95 -3.30 -0.02 -16.79 16 9 N -0.58 -17.84 2.93 -797.04 -2.34 -20.18 16 10 C 0.05 1.35 6.23 86.36 0.54 1.89 16 11 C -0.12 -2.69 6.08 30.67 0.19 -2.51 16 12 C -0.12 -3.30 5.88 30.62 0.18 -3.12 16 13 C -0.11 -4.08 4.96 30.67 0.15 -3.93 16 14 C 0.14 5.43 2.67 44.97 0.12 5.55 16 15 H 0.05 2.02 7.95 -2.39 -0.02 2.00 16 16 C 0.16 6.96 2.30 45.34 0.10 7.06 16 17 H 0.06 2.89 5.83 -9.72 -0.06 2.83 16 18 C -0.11 -4.28 4.89 31.78 0.16 -4.13 16 19 C -0.14 -5.64 7.11 32.06 0.23 -5.41 16 20 C 0.17 8.92 5.66 86.93 0.49 9.41 16 21 N -0.61 -31.96 2.59 -667.83 -1.73 -33.69 16 22 C -0.23 -12.82 9.81 84.03 0.82 -11.99 16 23 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 24 C -0.06 -3.58 5.48 84.86 0.47 -3.11 16 25 N -0.95 -57.57 10.25 21.65 0.22 -57.35 16 26 Si 0.97 46.76 29.55 68.60 2.03 48.79 16 27 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 28 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 29 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 30 H 0.06 0.87 8.05 -2.39 -0.02 0.85 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.06 1.39 6.67 -2.39 -0.02 1.37 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.37 6.38 -2.38 -0.02 1.36 16 39 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.15 3.30 3.91 -70.37 -0.28 3.03 16 41 H 0.10 1.71 8.14 -2.39 -0.02 1.70 16 42 H 0.06 1.45 8.14 -2.39 -0.02 1.44 16 43 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.07 1.84 8.14 -2.39 -0.02 1.83 16 45 H 0.05 2.11 7.86 -2.38 -0.02 2.10 16 46 H 0.06 2.22 5.72 -2.38 -0.01 2.21 16 47 H 0.09 3.33 5.64 -2.50 -0.01 3.31 16 48 H 0.06 2.15 5.45 -2.39 -0.01 2.14 16 49 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 50 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 51 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 52 H 0.05 3.03 6.29 -2.39 -0.02 3.02 16 53 H 0.24 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -66.03 384.73 4.60 -61.43 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.58 Total: 21.75 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 5.89 Total: 5.85 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -3.85 Total: -111.22 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.04 Total: -26.60 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -66.03 4.60 -61.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025211204.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.429 kcal (2) G-P(sol) polarization free energy of solvation -66.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds