Wall clock time and date at job start Tue Mar 31 2020 21:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46528 * 2 1 4 4 C 1.50698 * 109.47257 * 119.99691 * 2 1 3 5 5 O 1.21278 * 120.00030 * 110.88315 * 4 2 1 6 6 N 1.34780 * 120.00011 * 290.87775 * 4 2 1 7 7 C 1.47161 * 120.71062 * 4.68757 * 6 4 2 8 8 C 1.55892 * 107.94924 * 132.40671 * 7 6 4 9 9 H 1.09002 * 112.45111 * 181.84590 * 8 7 6 10 10 C 1.54547 * 108.44348 * 307.13144 * 8 7 6 11 11 C 1.53730 * 104.95247 * 88.28864 * 10 8 7 12 12 C 1.54542 * 104.95417 * 359.97438 * 11 10 8 13 13 H 1.09005 * 112.18062 * 146.28346 * 12 11 10 14 14 C 1.47164 * 120.70811 * 184.65944 * 6 4 2 15 15 N 1.48303 * 104.35785 * 24.58121 * 12 11 10 16 16 C 1.36938 * 128.07771 * 139.08178 * 15 12 11 17 17 H 1.07995 * 120.00139 * 352.04343 * 16 15 12 18 18 C 1.38818 * 119.99676 * 172.04377 * 16 15 12 19 19 N 1.31621 * 120.00047 * 348.78182 * 18 16 15 20 20 Si 1.86806 * 119.99726 * 168.78940 * 18 16 15 21 21 H 1.48501 * 109.46745 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.46509 * 299.99464 * 20 18 16 23 23 H 1.48498 * 109.47424 * 59.99543 * 20 18 16 24 24 C 1.52998 * 109.47241 * 240.00235 * 2 1 3 25 25 H 1.08998 * 109.47661 * 300.01716 * 24 2 1 26 26 C 1.53091 * 109.48065 * 60.05249 * 24 2 1 27 27 C 1.53182 * 109.16151 * 177.59286 * 26 24 2 28 28 C 1.53178 * 109.03515 * 303.02082 * 27 26 24 29 29 C 1.53084 * 109.16565 * 56.97992 * 28 27 26 30 30 O 1.42902 * 109.41734 * 302.39144 * 29 28 27 31 31 H 1.08996 * 109.47322 * 290.90288 * 1 2 3 32 32 H 1.08996 * 109.47439 * 50.91024 * 1 2 3 33 33 H 1.09007 * 109.46742 * 170.90977 * 1 2 3 34 34 H 1.09000 * 109.46835 * 188.88679 * 3 2 1 35 35 H 1.08998 * 109.47386 * 308.88409 * 3 2 1 36 36 H 1.08996 * 109.47743 * 68.88799 * 3 2 1 37 37 H 1.08996 * 109.75018 * 252.36579 * 7 6 4 38 38 H 1.09001 * 109.74857 * 13.04910 * 7 6 4 39 39 H 1.08994 * 110.36068 * 207.00538 * 10 8 7 40 40 H 1.09001 * 110.36154 * 329.32249 * 10 8 7 41 41 H 1.09000 * 110.41789 * 241.06348 * 11 10 8 42 42 H 1.08999 * 110.20425 * 118.82303 * 11 10 8 43 43 H 1.08996 * 109.74700 * 107.63340 * 14 6 4 44 44 H 1.09003 * 109.75088 * 346.90407 * 14 6 4 45 45 H 0.97001 * 119.99483 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.52238 * 297.49774 * 26 24 2 47 47 H 1.09001 * 109.52240 * 57.69109 * 26 24 2 48 48 H 1.08994 * 109.54470 * 183.15295 * 27 26 24 49 49 H 1.09002 * 109.54523 * 62.88575 * 27 26 24 50 50 H 1.08999 * 109.52341 * 297.06934 * 28 27 26 51 51 H 1.09003 * 109.51946 * 176.88751 * 28 27 26 52 52 H 1.09002 * 109.48483 * 182.40508 * 29 28 27 53 53 H 1.09003 * 109.49279 * 62.37655 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.5875 -1.7836 1.1269 6 7 1.8649 -0.1528 2.4461 7 6 1.1045 1.0976 2.6011 8 6 0.0981 0.9053 3.7760 9 1 -0.5292 1.7825 3.9345 10 6 -0.7247 -0.3757 3.5104 11 6 0.0972 -1.5125 4.1391 12 6 1.3467 -0.8215 4.7303 13 1 1.6927 -1.3073 5.6427 14 6 2.4379 -0.7818 3.6468 15 7 0.9151 0.5771 4.9692 16 6 1.1993 1.3768 6.0438 17 1 1.6983 0.9632 6.9077 18 6 0.8460 2.7191 6.0227 19 7 0.4428 3.2760 4.9004 20 14 0.9430 3.7351 7.5874 21 1 0.5147 5.1277 7.3005 22 1 0.0499 3.1451 8.6166 23 1 2.3408 3.7398 8.0887 24 6 2.0401 -0.7212 -1.2492 25 1 1.6765 -1.7488 -1.2495 26 6 1.5310 0.0011 -2.4994 27 6 2.0946 -0.6907 -3.7444 28 6 3.6241 -0.7007 -3.6610 29 6 4.0523 -1.3958 -2.3661 30 8 3.4691 -0.7212 -1.2495 31 1 -0.3634 0.3666 0.9600 32 1 -0.3634 0.6479 -0.7976 33 1 -0.3633 -1.0148 -0.1624 34 1 3.1183 1.4467 -0.1588 35 1 1.5528 2.0001 -0.7999 36 1 1.8120 1.9086 0.9586 37 1 1.7865 1.9182 2.8235 38 1 0.5572 1.3120 1.6831 39 1 -1.7004 -0.3061 3.9911 40 1 -0.8396 -0.5372 2.4385 41 1 0.3889 -2.2366 3.3783 42 1 -0.4760 -1.9999 4.9277 43 1 3.2866 -0.1961 3.9999 44 1 2.7615 -1.7960 3.4125 45 1 0.1963 4.2140 4.8856 46 1 0.4418 -0.0362 -2.5235 47 1 1.8604 1.0400 -2.4793 48 1 1.7816 -0.1480 -4.6363 49 1 1.7253 -1.7152 -3.7910 50 1 3.9958 0.3240 -3.6645 51 1 4.0320 -1.2399 -4.5160 52 1 5.1387 -1.3681 -2.2806 53 1 3.7153 -2.4323 -2.3810 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029311652.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:00 Heat of formation + Delta-G solvation = -50.220793 kcal Electronic energy + Delta-G solvation = -32745.553128 eV Core-core repulsion = 28810.869184 eV Total energy + Delta-G solvation = -3934.683944 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.12460 -40.48838 -39.07596 -36.66821 -35.21841 -34.46365 -34.13642 -32.23807 -31.06698 -30.61902 -28.37952 -27.91785 -26.20247 -25.75678 -25.25391 -24.89110 -22.85104 -21.28952 -21.15081 -20.44223 -20.10283 -18.44503 -17.53555 -17.15639 -17.12587 -16.71402 -16.66910 -16.31796 -15.65708 -15.52471 -15.31468 -15.15534 -15.09018 -14.73350 -14.52949 -14.31117 -13.88409 -13.70367 -13.56644 -13.47263 -13.28402 -13.21088 -13.05224 -12.95859 -12.75984 -12.59984 -12.55476 -12.29680 -12.11151 -12.01068 -11.89685 -11.81868 -11.76759 -11.47068 -11.38013 -11.25882 -11.14673 -10.99374 -10.80381 -10.39105 -10.17812 -9.63711 -8.68880 -7.80100 -5.13414 1.51327 1.52527 1.58257 1.78542 2.17904 2.53433 2.84100 3.35853 3.46005 3.55637 3.66695 3.96429 4.00852 4.02340 4.10240 4.11016 4.14338 4.18248 4.22412 4.29526 4.32087 4.38609 4.43559 4.56612 4.61635 4.68168 4.69430 4.74491 4.79833 4.82442 4.90877 4.94189 4.95147 4.98976 5.02043 5.04325 5.06465 5.10556 5.13982 5.16264 5.22541 5.32927 5.35494 5.37782 5.45367 5.49706 5.55865 5.66031 5.89150 6.29200 6.42125 6.68330 7.12334 7.33339 7.75953 8.53677 9.28954 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020565 B = 0.003490 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.200458 B = 8021.276176 C = 8349.708659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.066 4.066 3 C -0.157 4.157 4 C 0.519 3.481 5 O -0.584 6.584 6 N -0.592 5.592 7 C 0.106 3.894 8 C 0.154 3.846 9 H 0.105 0.895 10 C -0.129 4.129 11 C -0.112 4.112 12 C 0.131 3.869 13 H 0.078 0.922 14 C 0.108 3.892 15 N -0.606 5.606 16 C -0.235 4.235 17 H 0.073 0.927 18 C -0.051 4.051 19 N -0.932 5.932 20 Si 0.969 3.031 21 H -0.293 1.293 22 H -0.284 1.284 23 H -0.286 1.286 24 C 0.120 3.880 25 H 0.046 0.954 26 C -0.148 4.148 27 C -0.120 4.120 28 C -0.150 4.150 29 C 0.055 3.945 30 O -0.396 6.396 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.067 0.933 34 H 0.047 0.953 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.039 0.961 38 H 0.110 0.890 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.037 0.963 44 H 0.076 0.924 45 H 0.250 0.750 46 H 0.094 0.906 47 H 0.077 0.923 48 H 0.086 0.914 49 H 0.064 0.936 50 H 0.067 0.933 51 H 0.089 0.911 52 H 0.091 0.909 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.371 -6.140 -17.415 18.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.069 4.069 3 C -0.214 4.214 4 C 0.308 3.692 5 O -0.465 6.465 6 N -0.323 5.323 7 C -0.018 4.018 8 C 0.047 3.953 9 H 0.122 0.878 10 C -0.168 4.168 11 C -0.151 4.151 12 C 0.023 3.977 13 H 0.096 0.904 14 C -0.017 4.017 15 N -0.328 5.328 16 C -0.363 4.363 17 H 0.091 0.909 18 C -0.245 4.245 19 N -0.580 5.580 20 Si 0.798 3.202 21 H -0.219 1.219 22 H -0.211 1.211 23 H -0.213 1.213 24 C 0.062 3.938 25 H 0.064 0.936 26 C -0.186 4.186 27 C -0.158 4.158 28 C -0.188 4.188 29 C -0.022 4.022 30 O -0.315 6.315 31 H 0.093 0.907 32 H 0.120 0.880 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.057 0.943 38 H 0.128 0.872 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.055 0.945 44 H 0.095 0.905 45 H 0.059 0.941 46 H 0.112 0.888 47 H 0.096 0.904 48 H 0.104 0.896 49 H 0.083 0.917 50 H 0.086 0.914 51 H 0.107 0.893 52 H 0.109 0.891 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.974 -6.352 -17.183 18.345 hybrid contribution 0.563 0.495 1.145 1.369 sum -0.411 -5.857 -16.038 17.079 Atomic orbital electron populations 1.22267 0.90093 1.03966 1.04718 1.20762 0.98283 0.96777 0.91122 1.22309 1.01457 0.93271 1.04334 1.20967 0.78381 0.85001 0.84821 1.90583 1.45707 1.23512 1.86674 1.48107 1.52776 1.25502 1.05936 1.23166 0.94362 0.83637 1.00586 1.22591 0.91346 0.96695 0.84687 0.87771 1.22531 0.98307 0.95733 1.00234 1.22260 0.96278 0.97213 0.99368 1.22085 0.93524 0.86874 0.95210 0.90418 1.22111 0.96124 0.97245 0.86214 1.45397 1.56984 1.09774 1.20600 1.19244 1.33197 0.90525 0.93364 0.90901 1.25328 1.02699 0.96960 0.99495 1.69895 1.51540 1.11570 1.24961 0.85313 0.77414 0.77611 0.79842 1.21910 1.21084 1.21265 1.21783 0.81192 0.97489 0.93333 0.93624 1.22315 1.02231 1.00554 0.93453 1.21608 0.94883 1.01238 0.98053 1.22162 0.97059 1.01833 0.97720 1.22660 0.98449 0.95030 0.86014 1.87943 1.19904 1.77346 1.46318 0.90717 0.87989 0.91388 0.93361 0.88883 0.91177 0.94292 0.87244 0.92357 0.90652 0.92105 0.91679 0.94475 0.90545 0.94077 0.88763 0.90450 0.89566 0.91732 0.91377 0.89284 0.89064 0.93858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 7.33 71.98 0.53 -2.90 16 2 C -0.07 -1.87 0.36 -52.93 -0.02 -1.89 16 3 C -0.16 -4.34 7.42 71.98 0.53 -3.80 16 4 C 0.52 19.25 6.27 87.66 0.55 19.80 16 5 O -0.58 -25.14 14.95 11.16 0.17 -24.97 16 6 N -0.59 -22.91 2.28 -811.10 -1.85 -24.75 16 7 C 0.11 4.16 3.69 87.25 0.32 4.48 16 8 C 0.15 6.62 3.33 46.18 0.15 6.77 16 9 H 0.10 5.13 5.92 -2.39 -0.01 5.12 16 10 C -0.13 -4.59 6.18 31.37 0.19 -4.40 16 11 C -0.11 -3.97 6.18 31.36 0.19 -3.78 16 12 C 0.13 5.33 4.27 45.45 0.19 5.52 16 13 H 0.08 3.07 8.14 -2.38 -0.02 3.05 16 14 C 0.11 4.43 5.94 86.53 0.51 4.94 16 15 N -0.61 -28.94 2.79 -633.11 -1.76 -30.70 16 16 C -0.23 -12.42 10.39 84.03 0.87 -11.55 16 17 H 0.07 3.80 7.85 -2.91 -0.02 3.78 16 18 C -0.05 -2.68 5.43 84.86 0.46 -2.22 16 19 N -0.93 -50.21 10.55 21.65 0.23 -49.98 16 20 Si 0.97 43.82 29.57 68.60 2.03 45.85 16 21 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 23 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 24 C 0.12 3.15 1.42 30.62 0.04 3.19 16 25 H 0.05 1.31 8.00 -2.39 -0.02 1.30 16 26 C -0.15 -2.67 4.72 30.69 0.14 -2.52 16 27 C -0.12 -1.82 6.03 30.71 0.19 -1.64 16 28 C -0.15 -2.48 6.14 30.68 0.19 -2.30 16 29 C 0.05 1.26 6.84 72.01 0.49 1.75 16 30 O -0.40 -12.11 8.72 -134.79 -1.18 -13.29 16 31 H 0.07 1.87 3.29 -2.39 -0.01 1.86 16 32 H 0.10 1.63 6.92 -2.39 -0.02 1.61 16 33 H 0.07 1.44 8.12 -2.38 -0.02 1.42 16 34 H 0.05 1.49 7.43 -2.39 -0.02 1.48 16 35 H 0.09 1.96 6.80 -2.39 -0.02 1.95 16 36 H 0.07 2.21 3.95 -2.39 -0.01 2.20 16 37 H 0.04 1.83 7.68 -2.39 -0.02 1.81 16 38 H 0.11 3.62 3.00 -2.39 -0.01 3.61 16 39 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.08 2.34 5.70 -2.39 -0.01 2.33 16 41 H 0.06 2.09 7.86 -2.39 -0.02 2.08 16 42 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.08 3.07 7.08 -2.39 -0.02 3.05 16 45 H 0.25 13.22 8.31 -92.71 -0.77 12.45 16 46 H 0.09 1.34 6.79 -2.39 -0.02 1.32 16 47 H 0.08 1.40 6.52 -2.39 -0.02 1.38 16 48 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 52 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 53 H 0.04 0.99 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -64.53 374.74 4.10 -60.44 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 0.91 Total: 27.94 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 5.55 Total: 9.47 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -3.38 Total: -105.44 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -1.01 Total: -38.26 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -64.53 4.10 -60.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029311652.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.217 kcal (2) G-P(sol) polarization free energy of solvation -64.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds