Wall clock time and date at job start Tue Mar 31 2020 19:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47572 * 2 1 4 4 C 1.53003 * 109.46824 * 239.99840 * 2 1 3 5 5 C 1.50702 * 109.46818 * 120.00172 * 2 1 3 6 6 O 1.20780 * 119.99776 * 359.97438 * 5 2 1 7 7 C 1.49079 * 119.99871 * 179.97438 * 5 2 1 8 8 O 1.21368 * 120.00728 * 8.00836 * 7 5 2 9 9 N 1.34784 * 120.00218 * 188.00874 * 7 5 2 10 10 C 1.46963 * 120.64950 * 8.12228 * 9 7 5 11 11 C 1.53201 * 108.88199 * 126.46742 * 10 9 7 12 12 C 1.53036 * 109.31347 * 54.55801 * 11 10 9 13 13 C 1.53040 * 109.54074 * 298.63656 * 12 11 10 14 14 C 1.46923 * 120.63349 * 187.94999 * 9 7 5 15 15 H 1.08994 * 109.59243 * 113.67766 * 14 9 7 16 16 C 1.53000 * 109.58790 * 353.38978 * 14 9 7 17 17 H 1.09006 * 110.63879 * 312.51206 * 16 14 9 18 18 C 1.55160 * 110.71596 * 75.65102 * 16 14 9 19 19 C 1.54916 * 101.57672 * 154.04469 * 18 16 14 20 20 N 1.47423 * 104.83133 * 322.98843 * 19 18 16 21 21 C 1.36939 * 125.64396 * 204.08266 * 20 19 18 22 22 H 1.07999 * 119.99810 * 180.02562 * 21 20 19 23 23 C 1.38807 * 120.00284 * 0.05588 * 21 20 19 24 24 N 1.31623 * 119.99999 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99945 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47484 * 60.00180 * 25 23 21 27 27 H 1.48505 * 109.47129 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47494 * 299.99933 * 25 23 21 29 29 C 1.47020 * 108.70289 * 24.13352 * 20 19 18 30 30 H 1.08994 * 109.47186 * 300.00445 * 1 2 3 31 31 H 1.09005 * 109.46561 * 59.99920 * 1 2 3 32 32 H 1.08998 * 109.47376 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47431 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.46958 * 300.00127 * 3 2 1 35 35 H 1.09006 * 109.46871 * 59.99658 * 3 2 1 36 36 H 1.08995 * 109.47187 * 300.00045 * 4 2 1 37 37 H 1.08990 * 109.47429 * 60.00775 * 4 2 1 38 38 H 1.09010 * 109.46810 * 180.02562 * 4 2 1 39 39 H 1.08996 * 109.59338 * 6.61039 * 10 9 7 40 40 H 1.08999 * 109.47304 * 246.24761 * 10 9 7 41 41 H 1.08998 * 109.49597 * 294.60256 * 11 10 9 42 42 H 1.09002 * 109.49356 * 174.50947 * 11 10 9 43 43 H 1.08998 * 109.46154 * 178.60725 * 12 11 10 44 44 H 1.09008 * 109.45556 * 58.65320 * 12 11 10 45 45 H 1.09010 * 109.49306 * 301.41015 * 13 12 11 46 46 H 1.08993 * 109.52306 * 181.33659 * 13 12 11 47 47 H 1.09001 * 111.00563 * 272.11370 * 18 16 14 48 48 H 1.08994 * 111.00602 * 35.97456 * 18 16 14 49 49 H 1.09000 * 110.36842 * 81.83377 * 19 18 16 50 50 H 1.09005 * 110.36185 * 204.14982 * 19 18 16 51 51 H 0.97001 * 119.99543 * 180.02562 * 24 23 21 52 52 H 1.09001 * 109.87655 * 239.51722 * 29 20 19 53 53 H 1.09001 * 109.88023 * 118.35861 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 8 1.2473 -1.1691 2.0257 7 6 3.4979 -0.8472 1.4661 8 8 4.2850 -0.2646 0.7490 9 7 3.9492 -1.6179 2.4756 10 6 3.0256 -2.4679 3.2399 11 6 3.5542 -3.9058 3.2330 12 6 4.9943 -3.9181 3.7508 13 6 5.8772 -3.0744 2.8284 14 6 5.3749 -1.6272 2.8307 15 1 5.5072 -1.1961 3.8230 16 6 6.1639 -0.8089 1.8067 17 1 5.8784 -1.0854 0.7917 18 6 5.9560 0.7108 2.0408 19 6 7.2587 1.2986 1.4430 20 7 8.3088 0.3267 1.7979 21 6 9.6460 0.6010 1.9070 22 1 10.3383 -0.1841 2.1733 23 6 10.1117 1.8880 1.6761 24 7 9.2680 2.8448 1.3517 25 14 11.9357 2.2622 1.8257 26 1 12.6932 1.4278 0.8587 27 1 12.1720 3.6987 1.5323 28 1 12.3919 1.9579 3.2058 29 6 7.6828 -0.9859 2.0140 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2492 37 1 1.6768 -0.2075 -2.1392 38 1 3.1300 -0.7217 -1.2490 39 1 2.0377 -2.4395 2.7804 40 1 2.9640 -2.1062 4.2663 41 1 3.5299 -4.2974 2.2161 42 1 2.9306 -4.5257 3.8772 43 1 5.3645 -4.9431 3.7702 44 1 5.0213 -3.5033 4.7585 45 1 5.8310 -3.4740 1.8152 46 1 6.9071 -3.1027 3.1840 47 1 5.0806 1.0730 1.5017 48 1 5.8783 0.9352 3.1045 49 1 7.1732 1.3863 0.3599 50 1 7.4751 2.2702 1.8871 51 1 9.5936 3.7441 1.1900 52 1 7.8810 -1.3282 3.0297 53 1 8.0737 -1.7059 1.2950 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039195652.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:15 Heat of formation + Delta-G solvation = -25.609000 kcal Electronic energy + Delta-G solvation = -32099.397321 eV Core-core repulsion = 28165.780624 eV Total energy + Delta-G solvation = -3933.616697 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.50866 -40.64741 -38.72118 -38.45192 -36.74151 -34.83863 -33.79542 -32.63656 -30.89553 -28.79648 -28.43936 -28.22563 -27.53841 -26.33145 -25.29734 -24.22939 -22.67068 -21.88790 -21.08817 -20.98480 -19.58655 -18.87082 -17.87240 -17.52736 -17.03646 -16.92813 -16.54965 -16.43814 -15.74049 -15.63920 -15.39024 -15.17205 -14.77590 -14.62823 -14.34922 -14.23671 -14.20486 -14.05788 -13.68410 -13.50700 -13.43401 -13.11079 -13.06126 -13.00489 -12.89940 -12.71559 -12.55473 -12.40814 -12.30881 -12.11056 -12.00630 -11.92716 -11.88438 -11.75753 -11.65753 -11.56800 -11.22853 -11.14334 -10.93639 -10.71074 -9.66380 -9.51664 -8.86236 -7.74401 -5.20300 -0.08393 1.44660 1.49150 1.55504 1.61674 1.93165 2.50423 2.88208 3.32828 3.47865 3.64902 3.74443 3.84075 3.87162 3.90359 3.98718 4.07081 4.15935 4.25805 4.28713 4.33795 4.42566 4.57479 4.62607 4.68304 4.72151 4.74715 4.80981 4.86308 4.89221 4.91700 4.93996 4.95063 4.96106 5.02440 5.04144 5.10924 5.16403 5.19353 5.24736 5.27237 5.34771 5.42794 5.43699 5.48691 5.52114 5.61011 5.75042 5.84288 5.94398 6.30847 6.34090 6.99180 7.12058 7.80638 8.47085 9.26799 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013455 B = 0.003765 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.496965 B = 7435.541130 C = 9085.386627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.092 4.092 3 C -0.145 4.145 4 C -0.139 4.139 5 C 0.368 3.632 6 O -0.422 6.422 7 C 0.451 3.549 8 O -0.494 6.494 9 N -0.581 5.581 10 C 0.071 3.929 11 C -0.128 4.128 12 C -0.116 4.116 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.069 0.931 16 C -0.073 4.073 17 H 0.093 0.907 18 C -0.118 4.118 19 C 0.164 3.836 20 N -0.627 5.627 21 C -0.242 4.242 22 H 0.081 0.919 23 C -0.070 4.070 24 N -0.950 5.950 25 Si 0.983 3.017 26 H -0.278 1.278 27 H -0.292 1.292 28 H -0.275 1.275 29 C 0.136 3.864 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.056 0.944 39 H 0.126 0.874 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.062 0.938 46 H 0.075 0.925 47 H 0.095 0.905 48 H 0.038 0.962 49 H -0.024 1.024 50 H 0.065 0.935 51 H 0.246 0.754 52 H 0.028 0.972 53 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.954 -12.891 1.000 24.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.093 4.093 3 C -0.202 4.202 4 C -0.196 4.196 5 C 0.240 3.760 6 O -0.293 6.293 7 C 0.237 3.763 8 O -0.371 6.371 9 N -0.315 5.315 10 C -0.049 4.049 11 C -0.166 4.166 12 C -0.154 4.154 13 C -0.165 4.165 14 C 0.058 3.942 15 H 0.087 0.913 16 C -0.092 4.092 17 H 0.111 0.889 18 C -0.156 4.156 19 C 0.039 3.961 20 N -0.353 5.353 21 C -0.371 4.371 22 H 0.098 0.902 23 C -0.262 4.262 24 N -0.600 5.600 25 Si 0.811 3.189 26 H -0.204 1.204 27 H -0.218 1.218 28 H -0.201 1.201 29 C 0.011 3.989 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.075 0.925 39 H 0.143 0.857 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.117 0.883 43 H 0.099 0.901 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.094 0.906 47 H 0.113 0.887 48 H 0.057 0.943 49 H -0.006 1.006 50 H 0.083 0.917 51 H 0.055 0.945 52 H 0.045 0.955 53 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -20.832 -12.687 1.052 24.414 hybrid contribution 1.512 0.632 0.016 1.639 sum -19.320 -12.055 1.068 22.798 Atomic orbital electron populations 1.21764 0.90647 1.03043 1.03268 1.21006 0.98342 0.97032 0.92939 1.21932 1.02396 0.92662 1.03237 1.21860 1.01789 1.00270 0.95696 1.25214 0.88059 0.75647 0.87090 1.90148 1.58850 1.36350 1.43947 1.21186 0.91151 0.81348 0.82637 1.90783 1.55540 1.45065 1.45696 1.48263 1.08727 1.42081 1.32458 1.22855 0.94768 0.90047 0.97242 1.21926 0.96793 0.95554 1.02357 1.21538 0.94663 1.00457 0.98717 1.21971 1.00283 0.93190 1.01080 1.21307 0.78982 0.96658 0.97303 0.91265 1.22424 0.92006 0.94848 0.99894 0.88886 1.23305 0.98340 0.95632 0.98314 1.21589 0.85807 0.94642 0.94111 1.44866 1.03324 1.05892 1.81261 1.19471 0.83391 0.94730 1.39547 0.90154 1.25693 1.02532 0.95773 1.02180 1.70116 1.33689 1.01298 1.54906 0.85086 0.79175 0.76483 0.78177 1.20414 1.21849 1.20072 1.21569 0.92934 0.87324 0.97107 0.92380 0.89688 0.91788 0.91997 0.89527 0.92603 0.91752 0.89434 0.92530 0.85656 0.90788 0.91940 0.88254 0.90056 0.91314 0.91901 0.90612 0.88734 0.94318 1.00568 0.91674 0.94454 0.95452 0.96691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 7.76 71.98 0.56 -1.35 16 2 C -0.09 -1.74 0.76 -52.93 -0.04 -1.78 16 3 C -0.15 -3.00 8.29 71.98 0.60 -2.40 16 4 C -0.14 -2.48 8.29 71.98 0.60 -1.88 16 5 C 0.37 8.39 5.87 28.60 0.17 8.55 16 6 O -0.42 -9.54 12.82 -1.51 -0.02 -9.56 16 7 C 0.45 12.45 6.97 87.15 0.61 13.06 16 8 O -0.49 -16.35 6.33 -3.30 -0.02 -16.37 16 9 N -0.58 -14.92 2.98 -796.95 -2.37 -17.29 16 10 C 0.07 1.39 5.98 86.36 0.52 1.90 16 11 C -0.13 -1.99 6.08 30.67 0.19 -1.80 16 12 C -0.12 -2.00 5.88 30.62 0.18 -1.82 16 13 C -0.13 -3.04 4.87 30.67 0.15 -2.89 16 14 C 0.16 4.67 2.46 44.98 0.11 4.78 16 15 H 0.07 2.10 7.91 -2.39 -0.02 2.09 16 16 C -0.07 -2.77 1.85 -9.61 -0.02 -2.79 16 17 H 0.09 3.77 6.02 -3.42 -0.02 3.74 16 18 C -0.12 -5.11 5.58 31.99 0.18 -4.93 16 19 C 0.16 9.01 5.89 86.86 0.51 9.52 16 20 N -0.63 -35.15 3.39 -691.99 -2.35 -37.50 16 21 C -0.24 -14.43 10.27 84.03 0.86 -13.57 16 22 H 0.08 4.54 7.83 -2.91 -0.02 4.51 16 23 C -0.07 -4.15 5.49 84.86 0.47 -3.68 16 24 N -0.95 -59.84 10.09 21.65 0.22 -59.62 16 25 Si 0.98 47.47 29.55 68.60 2.03 49.50 16 26 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 27 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 28 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 29 C 0.14 6.08 5.86 86.73 0.51 6.59 16 30 H 0.06 0.90 8.10 -2.39 -0.02 0.88 16 31 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.06 0.90 8.10 -2.39 -0.02 0.88 16 33 H 0.06 1.65 6.19 -2.39 -0.01 1.64 16 34 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.06 1.30 6.70 -2.38 -0.02 1.28 16 39 H 0.13 2.45 4.34 -45.94 -0.20 2.25 16 40 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 44 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 45 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 46 H 0.08 1.91 6.78 -2.39 -0.02 1.89 16 47 H 0.09 3.94 5.37 -22.66 -0.12 3.82 16 48 H 0.04 1.67 7.89 -2.39 -0.02 1.65 16 49 H -0.02 -1.43 8.14 -2.39 -0.02 -1.45 16 50 H 0.07 4.03 5.87 -2.38 -0.01 4.02 16 51 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 52 H 0.03 1.17 6.95 -2.39 -0.02 1.15 16 53 H 0.02 0.67 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -71.03 386.86 4.20 -66.83 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.58 Total: 18.51 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: 6.14 Total: 5.50 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -4.51 Total: -114.41 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.04 Total: -25.93 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -71.03 4.20 -66.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039195652.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.221 kcal (2) G-P(sol) polarization free energy of solvation -71.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds