Wall clock time and date at job start Tue Mar 31 2020 19:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53004 * 109.47318 * 2 1 4 4 C 1.53003 * 109.47377 * 239.99909 * 2 1 3 5 5 C 1.50702 * 109.47207 * 119.99715 * 2 1 3 6 6 O 1.20782 * 119.99709 * 0.02562 * 5 2 1 7 7 C 1.49086 * 120.00125 * 179.97438 * 5 2 1 8 8 O 1.21368 * 119.99996 * 8.83962 * 7 5 2 9 9 N 1.34781 * 120.00334 * 188.84355 * 7 5 2 10 10 C 1.46928 * 120.62457 * 8.01350 * 9 7 5 11 11 C 1.53189 * 108.77536 * 233.58543 * 10 9 7 12 12 C 1.53041 * 109.31656 * 305.37362 * 11 10 9 13 13 C 1.53040 * 109.54062 * 61.36031 * 12 11 10 14 14 C 1.46920 * 120.63119 * 187.99697 * 9 7 5 15 15 H 1.09004 * 109.58325 * 246.33765 * 14 9 7 16 16 C 1.52996 * 109.59139 * 6.62427 * 14 9 7 17 17 H 1.09005 * 110.63847 * 303.28995 * 16 14 9 18 18 C 1.55155 * 110.72202 * 66.43001 * 16 14 9 19 19 C 1.54904 * 101.58265 * 154.04685 * 18 16 14 20 20 N 1.47424 * 104.83132 * 322.98993 * 19 18 16 21 21 C 1.36941 * 125.64818 * 204.09303 * 20 19 18 22 22 H 1.08002 * 119.99909 * 184.35887 * 21 20 19 23 23 C 1.38804 * 119.99909 * 4.35115 * 21 20 19 24 24 N 1.31626 * 119.99813 * 145.79216 * 23 21 20 25 25 Si 1.86798 * 120.00413 * 325.79060 * 23 21 20 26 26 H 1.48500 * 109.46840 * 89.99745 * 25 23 21 27 27 H 1.48502 * 109.47184 * 330.00298 * 25 23 21 28 28 H 1.48494 * 109.47239 * 210.00186 * 25 23 21 29 29 C 1.47017 * 108.70212 * 24.35826 * 20 19 18 30 30 H 1.09003 * 109.47369 * 300.00269 * 1 2 3 31 31 H 1.09000 * 109.47268 * 60.00225 * 1 2 3 32 32 H 1.09000 * 109.47170 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46868 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.46627 * 299.99546 * 3 2 1 35 35 H 1.08994 * 109.47170 * 59.99763 * 3 2 1 36 36 H 1.09000 * 109.46906 * 300.00083 * 4 2 1 37 37 H 1.09000 * 109.47031 * 59.99721 * 4 2 1 38 38 H 1.08996 * 109.47313 * 180.02562 * 4 2 1 39 39 H 1.08996 * 109.59142 * 353.38027 * 10 9 7 40 40 H 1.09002 * 109.58329 * 113.80194 * 10 9 7 41 41 H 1.09001 * 109.49494 * 65.32341 * 11 10 9 42 42 H 1.09004 * 109.49841 * 185.38301 * 11 10 9 43 43 H 1.08996 * 109.46064 * 181.38440 * 12 11 10 44 44 H 1.09000 * 109.45703 * 301.33843 * 12 11 10 45 45 H 1.08989 * 109.49631 * 178.68591 * 13 12 11 46 46 H 1.08999 * 109.49500 * 58.58734 * 13 12 11 47 47 H 1.09000 * 111.00159 * 35.97003 * 18 16 14 48 48 H 1.09001 * 111.00156 * 272.12286 * 18 16 14 49 49 H 1.09002 * 110.36675 * 204.15543 * 19 18 16 50 50 H 1.08995 * 110.46155 * 81.87719 * 19 18 16 51 51 H 0.96997 * 119.99647 * 5.00071 * 24 23 21 52 52 H 1.09008 * 109.88371 * 118.12794 * 29 20 19 53 53 H 1.09006 * 109.88273 * 239.29306 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2474 -1.1697 2.0253 7 6 3.4980 -0.8471 1.4662 8 8 4.2845 -0.2525 0.7584 9 7 3.9498 -1.6310 2.4651 10 6 3.0265 -2.4917 3.2171 11 6 3.1871 -2.1994 4.7123 12 6 4.6576 -2.3609 5.1045 13 6 5.5091 -1.3584 4.3222 14 6 5.3748 -1.6412 2.8226 15 1 5.8021 -2.6174 2.5930 16 6 6.1106 -0.5598 2.0289 17 1 5.9671 -0.7045 0.9581 18 6 5.6389 0.8541 2.4598 19 6 6.8779 1.7154 2.1098 20 7 8.0350 0.8620 2.4355 21 6 9.2945 1.3064 2.7377 22 1 10.0943 0.5976 2.8940 23 6 9.5434 2.6679 2.8429 24 7 10.4231 3.1105 3.7163 25 14 8.6301 3.8721 1.7451 26 1 7.3771 4.3015 2.4165 27 1 8.3000 3.2139 0.4555 28 1 9.4869 5.0579 1.4907 29 6 7.6143 -0.5454 2.3760 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6766 -1.7489 -1.2492 37 1 1.6766 -0.2075 -2.1392 38 1 3.1299 -0.7217 -1.2490 39 1 2.0013 -2.2825 2.9119 40 1 3.2617 -3.5380 3.0220 41 1 2.8651 -1.1790 4.9201 42 1 2.5780 -2.8973 5.2869 43 1 4.7706 -2.1775 6.1730 44 1 4.9858 -3.3744 4.8736 45 1 6.5530 -1.4581 4.6192 46 1 5.1652 -0.3460 4.5337 47 1 5.4295 0.8871 3.5290 48 1 4.7690 1.1683 1.8830 49 1 6.8929 2.6220 2.7149 50 1 6.8792 1.9679 1.0495 51 1 10.9497 2.4825 4.2350 52 1 8.1797 -1.0691 1.6051 53 1 7.7740 -1.0213 3.3436 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039195654.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:22 Heat of formation + Delta-G solvation = -22.568596 kcal Electronic energy + Delta-G solvation = -32434.730199 eV Core-core repulsion = 28501.245345 eV Total energy + Delta-G solvation = -3933.484855 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.60474 -40.78010 -38.89577 -38.51953 -36.74737 -35.00547 -33.80986 -33.06267 -30.77389 -29.46530 -28.47650 -28.21621 -27.55097 -25.85489 -25.33563 -24.45415 -22.84009 -22.46586 -21.35664 -20.49417 -19.64047 -19.43437 -17.94505 -17.53910 -17.23095 -16.86447 -16.73466 -16.34040 -15.79798 -15.70835 -15.47203 -15.30517 -15.17566 -14.99264 -14.74017 -14.53539 -14.48606 -14.01141 -13.87283 -13.49711 -13.38718 -13.28095 -13.06771 -12.99484 -12.91090 -12.77470 -12.54628 -12.38288 -12.30272 -12.14520 -11.96309 -11.90030 -11.82205 -11.75141 -11.68401 -11.58121 -11.34598 -11.11006 -10.90240 -10.49758 -9.64178 -9.59187 -9.08710 -8.72524 -5.33439 -0.12195 1.36130 1.48783 1.57612 1.67556 1.91096 2.48597 2.83438 2.96438 3.38389 3.45190 3.66703 3.75654 3.84491 3.89544 3.90894 3.97167 4.08960 4.11470 4.18485 4.28942 4.30577 4.42837 4.50831 4.60192 4.65654 4.71471 4.75498 4.75874 4.82335 4.85856 4.87683 4.90431 4.95563 4.96420 4.99355 5.04275 5.06558 5.14075 5.15420 5.20185 5.23987 5.27961 5.31661 5.36975 5.41884 5.48689 5.56867 5.66226 5.97752 6.10646 6.29640 6.83715 6.92816 7.52750 8.19827 8.81043 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012591 B = 0.004415 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.318338 B = 6339.872748 C = 7914.343701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.092 4.092 3 C -0.147 4.147 4 C -0.139 4.139 5 C 0.369 3.631 6 O -0.417 6.417 7 C 0.462 3.538 8 O -0.501 6.501 9 N -0.578 5.578 10 C 0.056 3.944 11 C -0.125 4.125 12 C -0.115 4.115 13 C -0.135 4.135 14 C 0.162 3.838 15 H 0.089 0.911 16 C -0.086 4.086 17 H 0.113 0.887 18 C -0.110 4.110 19 C 0.103 3.897 20 N -0.627 5.627 21 C -0.331 4.331 22 H 0.048 0.952 23 C -0.070 4.070 24 N -0.942 5.942 25 Si 1.098 2.902 26 H -0.276 1.276 27 H -0.276 1.276 28 H -0.300 1.300 29 C 0.135 3.865 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.059 0.941 39 H 0.140 0.860 40 H 0.081 0.919 41 H 0.053 0.947 42 H 0.098 0.902 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.092 0.908 49 H 0.036 0.964 50 H 0.023 0.977 51 H 0.250 0.750 52 H 0.014 0.986 53 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.986 -13.282 -5.538 29.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.093 4.093 3 C -0.204 4.204 4 C -0.196 4.196 5 C 0.241 3.759 6 O -0.289 6.289 7 C 0.248 3.752 8 O -0.379 6.379 9 N -0.311 5.311 10 C -0.064 4.064 11 C -0.163 4.163 12 C -0.153 4.153 13 C -0.173 4.173 14 C 0.059 3.941 15 H 0.107 0.893 16 C -0.105 4.105 17 H 0.130 0.870 18 C -0.147 4.147 19 C -0.022 4.022 20 N -0.355 5.355 21 C -0.459 4.459 22 H 0.066 0.934 23 C -0.265 4.265 24 N -0.585 5.585 25 Si 0.926 3.074 26 H -0.203 1.203 27 H -0.202 1.202 28 H -0.229 1.229 29 C 0.009 3.991 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.157 0.843 40 H 0.099 0.901 41 H 0.071 0.929 42 H 0.116 0.884 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.110 0.890 49 H 0.054 0.946 50 H 0.041 0.959 51 H 0.060 0.940 52 H 0.032 0.968 53 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -26.117 -11.646 -5.771 29.172 hybrid contribution 1.542 -1.488 0.729 2.264 sum -24.574 -13.134 -5.043 28.317 Atomic orbital electron populations 1.21776 0.90801 1.03046 1.03268 1.21018 0.98268 0.97149 0.92880 1.21958 1.02618 0.92528 1.03285 1.21869 1.01952 1.00253 0.95565 1.25276 0.88061 0.75531 0.87027 1.90037 1.58753 1.36628 1.43455 1.21115 0.91129 0.80956 0.82049 1.90716 1.55637 1.45415 1.46109 1.48304 1.08755 1.41313 1.32776 1.23145 0.97114 0.94181 0.92002 1.21825 0.96642 1.02414 0.95375 1.21536 0.94788 0.99110 0.99849 1.22070 1.00890 1.00282 0.94019 1.21184 0.79682 0.98864 0.94385 0.89341 1.22680 0.91671 0.94035 1.02104 0.86952 1.23061 0.96627 0.94833 1.00196 1.21998 0.88249 0.95021 0.96928 1.44908 1.05813 1.02190 1.82544 1.19855 0.87260 0.92951 1.45855 0.93428 1.26767 1.02533 0.97493 0.99747 1.71038 1.29798 1.36594 1.21101 0.83401 0.74253 0.73885 0.75857 1.20333 1.20191 1.22855 1.21593 0.94562 0.85333 0.97600 0.92460 0.89678 0.91811 0.91564 0.89468 0.92698 0.91799 0.89392 0.92169 0.84321 0.90111 0.92858 0.88409 0.91163 0.90585 0.91558 0.92391 0.92047 0.88963 0.94559 0.95944 0.94031 0.96773 0.95178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 7.76 71.98 0.56 -1.08 16 2 C -0.09 -1.47 0.77 -52.93 -0.04 -1.51 16 3 C -0.15 -2.54 8.29 71.98 0.60 -1.95 16 4 C -0.14 -2.01 8.29 71.98 0.60 -1.41 16 5 C 0.37 7.31 5.90 28.60 0.17 7.48 16 6 O -0.42 -8.40 12.78 -1.52 -0.02 -8.42 16 7 C 0.46 11.12 6.42 87.16 0.56 11.68 16 8 O -0.50 -14.26 7.17 -3.30 -0.02 -14.29 16 9 N -0.58 -13.17 2.95 -797.05 -2.35 -15.52 16 10 C 0.06 0.97 6.24 86.36 0.54 1.51 16 11 C -0.12 -2.06 6.08 30.67 0.19 -1.88 16 12 C -0.12 -2.17 5.88 30.62 0.18 -1.99 16 13 C -0.13 -3.53 4.79 30.67 0.15 -3.39 16 14 C 0.16 4.27 2.76 44.98 0.12 4.39 16 15 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 16 C -0.09 -2.95 2.05 -9.60 -0.02 -2.97 16 17 H 0.11 4.02 5.78 -13.19 -0.08 3.94 16 18 C -0.11 -4.08 5.38 31.98 0.17 -3.90 16 19 C 0.10 4.83 4.77 86.85 0.41 5.25 16 20 N -0.63 -33.07 3.37 -691.99 -2.34 -35.41 16 21 C -0.33 -20.37 10.38 84.03 0.87 -19.49 16 22 H 0.05 3.12 8.06 -2.91 -0.02 3.09 16 23 C -0.07 -4.37 5.40 84.86 0.46 -3.91 16 24 N -0.94 -62.22 13.70 21.65 0.30 -61.93 16 25 Si 1.10 57.07 24.85 68.60 1.70 58.78 16 26 H -0.28 -13.40 6.32 99.48 0.63 -12.77 16 27 H -0.28 -13.65 6.40 99.48 0.64 -13.01 16 28 H -0.30 -15.47 7.11 99.48 0.71 -14.77 16 29 C 0.13 5.77 6.67 86.73 0.58 6.35 16 30 H 0.06 0.78 8.10 -2.39 -0.02 0.76 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.77 8.10 -2.39 -0.02 0.75 16 33 H 0.07 1.48 6.17 -2.39 -0.01 1.46 16 34 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.06 1.12 6.73 -2.39 -0.02 1.11 16 39 H 0.14 2.45 3.88 -72.16 -0.28 2.17 16 40 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.10 1.17 8.14 -2.39 -0.02 1.16 16 43 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.07 1.97 6.43 -2.39 -0.02 1.95 16 46 H 0.06 1.74 5.70 -2.39 -0.01 1.72 16 47 H 0.06 2.28 5.48 -2.39 -0.01 2.27 16 48 H 0.09 3.18 5.60 -2.39 -0.01 3.16 16 49 H 0.04 1.84 4.90 -2.39 -0.01 1.83 16 50 H 0.02 1.09 6.58 -2.39 -0.02 1.07 16 51 H 0.25 16.53 8.73 -92.71 -0.81 15.72 16 52 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 53 H 0.03 1.27 5.97 -2.38 -0.01 1.26 16 Total: -1.00 -72.56 376.40 3.75 -68.81 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.38 Total: 14.80 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 6.09 Total: -6.83 kcal Atomic # 7 Polarization: -108.47 SS G_CDS: -4.39 Total: -112.86 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.04 Total: -22.70 kcal Atomic # 14 Polarization: 57.07 SS G_CDS: 1.70 Total: 58.78 kcal Total: -72.56 3.75 -68.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039195654.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.245 kcal (2) G-P(sol) polarization free energy of solvation -72.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds