Wall clock time and date at job start Tue Mar 31 2020 19:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46985 * 2 1 4 4 C 1.52999 * 109.47171 * 239.99933 * 2 1 3 5 5 C 1.50701 * 109.47142 * 119.99596 * 2 1 3 6 6 O 1.20779 * 120.00192 * 0.02562 * 5 2 1 7 7 C 1.49086 * 120.00140 * 179.97438 * 5 2 1 8 8 O 1.21373 * 119.99839 * 7.02829 * 7 5 2 9 9 N 1.34831 * 120.00280 * 187.02043 * 7 5 2 10 10 C 1.43422 * 120.08912 * 358.57429 * 9 7 5 11 11 C 1.54602 * 116.14805 * 269.13923 * 10 9 7 12 12 C 1.54747 * 110.27154 * 327.18172 * 11 10 9 13 13 C 1.49014 * 111.90252 * 313.53830 * 12 11 10 14 14 C 1.51971 * 109.61121 * 96.91174 * 13 12 11 15 15 C 1.56894 * 106.30319 * 159.46271 * 14 13 12 16 16 C 1.54463 * 102.32932 * 283.51347 * 15 14 13 17 17 N 1.47196 * 107.08010 * 337.86883 * 16 15 14 18 18 C 1.36735 * 126.15588 * 174.88586 * 17 16 15 19 19 H 1.08001 * 119.99286 * 179.97438 * 18 17 16 20 20 C 1.38807 * 120.00378 * 359.97438 * 18 17 16 21 21 N 1.31618 * 120.00149 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00047 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47240 * 90.00005 * 22 20 18 24 24 H 1.48505 * 109.47239 * 209.99427 * 22 20 18 25 25 H 1.48498 * 109.47311 * 329.99815 * 22 20 18 26 26 C 1.47434 * 107.67011 * 355.03088 * 17 16 15 27 27 C 1.46210 * 115.98036 * 281.62380 * 14 13 12 28 28 H 1.08995 * 109.47159 * 299.99941 * 1 2 3 29 29 H 1.08998 * 109.46825 * 60.00050 * 1 2 3 30 30 H 1.09001 * 109.47116 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46968 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46811 * 299.99651 * 3 2 1 33 33 H 1.08995 * 109.47124 * 60.00038 * 3 2 1 34 34 H 1.09001 * 109.47039 * 299.99972 * 4 2 1 35 35 H 1.08998 * 109.47233 * 60.00266 * 4 2 1 36 36 H 1.09005 * 109.47327 * 179.97438 * 4 2 1 37 37 H 1.09298 * 107.72524 * 30.27161 * 10 9 7 38 38 H 1.08971 * 108.37854 * 146.75081 * 10 9 7 39 39 H 1.09296 * 109.03943 * 86.64421 * 11 10 9 40 40 H 1.08816 * 109.77101 * 205.98644 * 11 10 9 41 41 H 1.08341 * 109.04375 * 77.81312 * 12 11 10 42 42 H 1.10154 * 107.82113 * 194.56322 * 12 11 10 43 43 H 1.09631 * 110.33788 * 335.84172 * 13 12 11 44 44 H 1.09886 * 109.68189 * 217.07297 * 13 12 11 45 45 H 1.08686 * 110.23446 * 165.22733 * 15 14 13 46 46 H 1.08752 * 109.91372 * 41.48820 * 15 14 13 47 47 H 1.08875 * 109.97162 * 218.56465 * 16 15 14 48 48 H 1.08877 * 109.97816 * 97.25992 * 16 15 14 49 49 H 0.96998 * 120.00254 * 179.97438 * 21 20 18 50 50 H 1.07936 * 111.39792 * 153.02543 * 26 17 16 51 51 H 1.09897 * 109.02712 * 273.76590 * 26 17 16 52 52 H 1.09434 * 109.47972 * 172.42438 * 27 14 13 53 53 H 1.09416 * 109.49808 * 291.42155 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7103 1.2305 6 8 1.2475 -1.1697 2.0254 7 6 3.4981 -0.8470 1.4662 8 8 4.2854 -0.2787 0.7380 9 7 3.9491 -1.6019 2.4883 10 6 3.0202 -2.2494 3.3685 11 6 2.5969 -1.4483 4.6213 12 6 3.7657 -0.5593 5.1094 13 6 5.0519 -1.3101 5.1592 14 6 5.8455 -1.0472 3.8901 15 6 7.3379 -1.3982 4.2233 16 6 7.7874 -0.1747 5.0522 17 7 6.8833 0.9353 4.7096 18 6 6.8694 2.1730 5.2905 19 1 6.1596 2.9168 4.9596 20 6 7.7674 2.4737 6.3053 21 7 8.6321 1.5671 6.7089 22 14 7.7489 4.1648 7.0983 23 1 6.8224 4.1572 8.2589 24 1 9.1175 4.5103 7.5598 25 1 7.2920 5.1715 6.1068 26 6 5.9934 0.4707 3.6299 27 6 5.4194 -1.7874 2.7034 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 -1.7489 -1.2492 35 1 1.6768 -0.2074 -2.1392 36 1 3.1301 -0.7209 -1.2495 37 1 2.1188 -2.4754 2.7932 38 1 3.4557 -3.1941 3.6930 39 1 1.7491 -0.8078 4.3652 40 1 2.2975 -2.1330 5.4122 41 1 3.8338 0.3155 4.4739 42 1 3.5258 -0.2167 6.1284 43 1 4.8620 -2.3848 5.2631 44 1 5.6371 -0.9843 6.0303 45 1 7.9170 -1.4853 3.3077 46 1 7.3808 -2.3081 4.8174 47 1 8.8119 0.0911 4.7973 48 1 7.7138 -0.3982 6.1152 49 1 9.2599 1.7773 7.4178 50 1 5.0513 0.9973 3.6420 51 1 6.4886 0.6334 2.6624 52 1 5.9672 -1.4221 1.8293 53 1 5.6422 -2.8503 2.8364 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045924063.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:55 Heat of formation + Delta-G solvation = -46.161291 kcal Electronic energy + Delta-G solvation = -32369.877618 eV Core-core repulsion = 28435.369707 eV Total energy + Delta-G solvation = -3934.507911 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.39725 -40.94815 -39.31791 -37.86175 -36.56027 -34.95242 -34.30883 -32.39679 -30.46021 -28.89880 -28.25011 -28.21577 -27.66777 -26.51388 -26.02962 -24.81402 -22.75574 -21.82314 -21.18060 -19.80338 -19.35190 -18.91046 -18.09964 -17.52461 -17.08408 -16.74715 -16.62105 -16.34588 -16.05767 -15.67152 -15.34444 -15.21884 -14.95745 -14.66997 -14.52206 -14.26698 -14.07497 -13.81805 -13.60370 -13.47596 -13.15216 -13.12788 -13.06535 -12.97530 -12.84723 -12.77008 -12.59746 -12.48739 -12.37991 -12.13924 -12.05390 -12.03398 -11.92978 -11.81840 -11.62382 -11.60527 -11.16824 -11.15902 -11.07193 -10.70604 -10.04366 -9.67919 -8.88501 -7.85857 -5.19370 -0.06635 1.41315 1.42873 1.51562 1.59172 1.93953 2.47191 2.90846 3.31432 3.48186 3.55402 3.73145 3.77370 3.87042 3.89170 3.94691 4.06984 4.10132 4.21001 4.29951 4.39605 4.54307 4.57589 4.66123 4.68739 4.71180 4.73670 4.77746 4.79838 4.85085 4.88334 4.92236 4.93861 4.94695 4.98135 5.01977 5.11454 5.14769 5.21629 5.25199 5.27389 5.33642 5.36394 5.41524 5.43461 5.59758 5.62944 5.68400 5.78936 5.89020 6.19377 6.35808 6.90178 7.09895 7.76526 8.44720 9.24384 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015010 B = 0.003705 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.918780 B = 7555.502997 C = 8118.513451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.093 4.093 3 C -0.144 4.144 4 C -0.138 4.138 5 C 0.361 3.639 6 O -0.415 6.415 7 C 0.466 3.534 8 O -0.530 6.530 9 N -0.571 5.571 10 C 0.083 3.917 11 C -0.118 4.118 12 C -0.112 4.112 13 C -0.079 4.079 14 C -0.077 4.077 15 C -0.125 4.125 16 C 0.187 3.813 17 N -0.618 5.618 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.061 4.061 21 N -0.948 5.948 22 Si 0.972 3.028 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.274 1.274 26 C 0.156 3.844 27 C 0.137 3.863 28 H 0.053 0.947 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.058 0.942 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.053 0.947 40 H 0.094 0.906 41 H 0.038 0.962 42 H 0.037 0.963 43 H 0.088 0.912 44 H 0.039 0.961 45 H 0.071 0.929 46 H 0.092 0.908 47 H -0.007 1.007 48 H 0.023 0.977 49 H 0.246 0.754 50 H 0.032 0.968 51 H -0.002 1.002 52 H 0.084 0.916 53 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.759 -11.770 -13.293 24.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.094 4.094 3 C -0.201 4.201 4 C -0.195 4.195 5 C 0.232 3.768 6 O -0.285 6.285 7 C 0.251 3.749 8 O -0.408 6.408 9 N -0.303 5.303 10 C -0.040 4.040 11 C -0.157 4.157 12 C -0.149 4.149 13 C -0.116 4.116 14 C -0.079 4.079 15 C -0.163 4.163 16 C 0.062 3.938 17 N -0.344 5.344 18 C -0.366 4.366 19 H 0.088 0.912 20 C -0.255 4.255 21 N -0.597 5.597 22 Si 0.801 3.199 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.199 1.199 26 C 0.030 3.970 27 C 0.017 3.983 28 H 0.072 0.928 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.125 0.875 38 H 0.111 0.889 39 H 0.072 0.928 40 H 0.112 0.888 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.106 0.894 44 H 0.058 0.942 45 H 0.089 0.911 46 H 0.110 0.890 47 H 0.011 0.989 48 H 0.042 0.958 49 H 0.056 0.944 50 H 0.050 0.950 51 H 0.016 0.984 52 H 0.102 0.898 53 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -16.664 -11.605 -13.082 24.156 hybrid contribution 0.786 1.591 1.050 2.062 sum -15.878 -10.013 -12.032 22.297 Atomic orbital electron populations 1.21765 0.90719 1.03108 1.03163 1.21024 0.98313 0.96918 0.93180 1.21917 1.02225 0.92879 1.03100 1.21860 1.01880 1.00325 0.95429 1.25113 0.87920 0.76313 0.87483 1.90269 1.58744 1.35679 1.43805 1.21303 0.91453 0.80209 0.81927 1.90711 1.57641 1.45131 1.47298 1.48111 1.07850 1.47370 1.26958 1.21832 0.94349 0.95680 0.92173 1.22507 0.96604 0.99078 0.97483 1.21106 0.95401 0.98492 0.99939 1.20514 0.94853 1.00653 0.95573 1.20805 0.96084 0.94897 0.96108 1.23290 0.94658 0.98321 1.00080 1.20889 0.91091 0.85700 0.96162 1.44677 1.38328 1.10848 1.40527 1.19269 1.14461 0.89479 1.13430 0.91225 1.25517 0.98327 1.01557 1.00050 1.70155 1.23348 1.34241 1.31956 0.85173 0.76579 0.79762 0.78419 1.21188 1.21783 1.19924 1.21622 0.92314 0.93432 0.89613 1.20929 0.78856 1.01622 0.96929 0.92797 0.89493 0.91658 0.92104 0.89102 0.93303 0.91616 0.89213 0.92263 0.87502 0.88884 0.92773 0.88803 0.94351 0.94388 0.89371 0.94231 0.91077 0.88998 0.98879 0.95846 0.94428 0.94992 0.98422 0.89804 0.86751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 7.76 71.98 0.56 -1.34 16 2 C -0.09 -1.72 0.76 -52.93 -0.04 -1.76 16 3 C -0.14 -2.91 8.29 71.98 0.60 -2.31 16 4 C -0.14 -2.17 8.29 71.98 0.60 -1.57 16 5 C 0.36 8.36 5.87 28.60 0.17 8.52 16 6 O -0.41 -9.71 11.76 -1.51 -0.02 -9.72 16 7 C 0.47 12.83 7.39 87.15 0.64 13.47 16 8 O -0.53 -17.16 12.92 -3.32 -0.04 -17.20 16 9 N -0.57 -14.48 2.47 -829.93 -2.05 -16.53 16 10 C 0.08 1.73 4.50 87.49 0.39 2.13 16 11 C -0.12 -2.79 6.18 31.74 0.20 -2.59 16 12 C -0.11 -3.58 5.13 29.92 0.15 -3.43 16 13 C -0.08 -2.53 4.00 28.99 0.12 -2.42 16 14 C -0.08 -2.56 0.54 -52.66 -0.03 -2.59 16 15 C -0.12 -4.41 5.68 32.46 0.18 -4.23 16 16 C 0.19 9.33 4.57 86.74 0.40 9.73 16 17 N -0.62 -33.00 3.11 -692.38 -2.15 -35.16 16 18 C -0.24 -13.93 10.30 84.06 0.87 -13.07 16 19 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 20 C -0.06 -3.61 5.49 84.86 0.47 -3.14 16 21 N -0.95 -58.13 10.38 21.65 0.22 -57.91 16 22 Si 0.97 47.46 29.55 68.60 2.03 49.49 16 23 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 24 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 25 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 26 C 0.16 6.89 5.65 86.78 0.49 7.38 16 27 C 0.14 3.62 4.69 83.66 0.39 4.01 16 28 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 29 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 31 H 0.06 1.56 6.22 -2.38 -0.01 1.54 16 32 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 1.18 6.67 -2.38 -0.02 1.17 16 37 H 0.11 2.16 4.95 -15.31 -0.08 2.08 16 38 H 0.09 1.51 7.70 -2.40 -0.02 1.49 16 39 H 0.05 1.36 7.23 -2.23 -0.02 1.35 16 40 H 0.09 1.80 8.13 -2.48 -0.02 1.78 16 41 H 0.04 1.46 5.31 -2.73 -0.01 1.45 16 42 H 0.04 1.29 8.24 -1.77 -0.01 1.27 16 43 H 0.09 2.20 7.34 -2.05 -0.02 2.18 16 44 H 0.04 1.60 6.68 -1.91 -0.01 1.59 16 45 H 0.07 2.33 8.00 -2.55 -0.02 2.31 16 46 H 0.09 2.74 7.95 -2.52 -0.02 2.72 16 47 H -0.01 -0.40 7.75 -2.45 -0.02 -0.42 16 48 H 0.02 1.30 6.73 -2.45 -0.02 1.28 16 49 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 50 H 0.03 1.49 5.86 -2.94 -0.02 1.47 16 51 H 0.00 -0.09 8.00 -1.91 -0.02 -0.11 16 52 H 0.08 2.46 6.91 -2.16 -0.01 2.45 16 53 H 0.11 2.21 8.12 -2.17 -0.02 2.19 16 Total: -1.00 -71.13 387.43 4.97 -66.16 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.83 Total: 14.09 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 6.15 Total: 6.79 kcal Atomic # 7 Polarization: -105.62 SS G_CDS: -3.98 Total: -109.59 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.06 Total: -26.93 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -71.13 4.97 -66.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045924063.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.994 kcal (2) G-P(sol) polarization free energy of solvation -71.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds