Wall clock time and date at job start Tue Mar 31 2020 19:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.46997 * 2 1 4 4 C 1.53000 * 109.46786 * 240.00682 * 2 1 3 5 5 C 1.50691 * 109.47487 * 120.00413 * 2 1 3 6 6 O 1.20785 * 119.99897 * 0.02562 * 5 2 1 7 7 C 1.49085 * 120.00354 * 179.97438 * 5 2 1 8 8 O 1.21363 * 119.99896 * 279.38271 * 7 5 2 9 9 N 1.34776 * 119.99980 * 99.37628 * 7 5 2 10 10 C 1.47534 * 118.62578 * 6.58699 * 9 7 5 11 11 C 1.53959 * 112.19684 * 138.10977 * 10 9 7 12 12 C 1.50869 * 110.13357 * 319.35607 * 11 10 9 13 13 C 1.52608 * 109.36890 * 91.86043 * 12 11 10 14 14 C 1.47075 * 114.26672 * 275.26572 * 13 12 11 15 15 C 1.54249 * 112.30321 * 183.70648 * 14 13 12 16 16 C 1.54408 * 104.95947 * 122.39182 * 15 14 13 17 17 N 1.48198 * 104.56187 * 24.00143 * 16 15 14 18 18 C 1.36936 * 127.87596 * 140.25912 * 17 16 15 19 19 H 1.08003 * 120.00152 * 166.70044 * 18 17 16 20 20 C 1.38809 * 119.99970 * 346.69790 * 18 17 16 21 21 N 1.31614 * 120.00002 * 10.61024 * 20 18 17 22 22 Si 1.86800 * 120.00128 * 190.60838 * 20 18 17 23 23 H 1.48498 * 109.47174 * 90.00146 * 22 20 18 24 24 H 1.48505 * 109.47195 * 210.00069 * 22 20 18 25 25 H 1.48498 * 109.47088 * 330.00191 * 22 20 18 26 26 C 1.48185 * 104.25043 * 320.26163 * 17 16 15 27 27 C 1.44575 * 118.62908 * 186.85801 * 9 7 5 28 28 H 1.08997 * 109.46946 * 299.99020 * 1 2 3 29 29 H 1.08996 * 109.47334 * 59.99723 * 1 2 3 30 30 H 1.09004 * 109.46895 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47449 * 179.97438 * 3 2 1 32 32 H 1.09008 * 109.47487 * 300.00647 * 3 2 1 33 33 H 1.09005 * 109.47176 * 60.00293 * 3 2 1 34 34 H 1.09004 * 109.47300 * 299.99625 * 4 2 1 35 35 H 1.08996 * 109.47515 * 59.99705 * 4 2 1 36 36 H 1.09006 * 109.47130 * 179.97438 * 4 2 1 37 37 H 1.08996 * 108.93748 * 258.80766 * 10 9 7 38 38 H 1.09006 * 108.93717 * 17.40974 * 10 9 7 39 39 H 1.09002 * 109.36098 * 199.15896 * 11 10 9 40 40 H 1.08999 * 109.36187 * 79.56499 * 11 10 9 41 41 H 1.08998 * 109.49023 * 331.88991 * 12 11 10 42 42 H 1.09002 * 109.49173 * 211.82889 * 12 11 10 43 43 H 1.09003 * 108.52428 * 154.02622 * 13 12 11 44 44 H 1.08998 * 108.52259 * 36.50634 * 13 12 11 45 45 H 1.08995 * 110.34865 * 241.25680 * 15 14 13 46 46 H 1.08998 * 110.34549 * 3.52340 * 15 14 13 47 47 H 1.08999 * 110.41943 * 142.77637 * 16 15 14 48 48 H 1.09005 * 110.41861 * 265.23155 * 16 15 14 49 49 H 0.97006 * 120.00385 * 180.02562 * 21 20 18 50 50 H 1.09003 * 110.40436 * 280.94452 * 26 17 16 51 51 H 1.09000 * 110.40914 * 158.51119 * 26 17 16 52 52 H 1.08996 * 109.47270 * 30.28206 * 27 9 7 53 53 H 1.08997 * 109.47378 * 150.28809 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 2.0324 -0.7104 1.2303 6 8 1.2476 -1.1700 2.0251 7 6 3.4982 -0.8472 1.4659 8 8 4.1256 -1.7167 0.8975 9 7 4.1265 -0.0051 2.3101 10 6 3.3149 0.9439 3.0959 11 6 3.8012 1.0580 4.5522 12 6 4.1753 -0.3038 5.0830 13 6 5.6608 -0.5523 4.8371 14 6 5.9720 -1.0812 3.5005 15 6 7.4715 -1.4013 3.3322 16 6 7.5197 -2.8980 2.9557 17 7 6.1905 -3.1761 2.3624 18 6 5.9013 -3.9606 1.2780 19 1 4.8804 -4.2513 1.0786 20 6 6.9202 -4.3823 0.4349 21 7 8.1773 -4.2094 0.7843 22 14 6.5073 -5.1950 -1.1955 23 1 6.3993 -4.1576 -2.2525 24 1 7.5798 -6.1576 -1.5544 25 1 5.2147 -5.9161 -1.0758 26 6 5.2455 -2.4116 3.2101 27 6 5.5679 -0.0653 2.4033 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7488 -1.2495 35 1 1.6766 -0.2073 -2.1393 36 1 3.1300 -0.7208 -1.2496 37 1 3.3674 1.9267 2.6275 38 1 2.2779 0.6081 3.0945 39 1 3.0056 1.4793 5.1669 40 1 4.6714 1.7131 4.5924 41 1 3.5893 -1.0671 4.5713 42 1 3.9719 -0.3455 6.1531 43 1 6.0214 -1.2610 5.5826 44 1 6.1959 0.3879 4.9707 45 1 7.9009 -0.7959 2.5340 46 1 8.0032 -1.2286 4.2678 47 1 8.3080 -3.0813 2.2256 48 1 7.6745 -3.5090 3.8451 49 1 8.8895 -4.5037 0.1950 50 1 5.0486 -2.9477 4.1385 51 1 4.3157 -2.2273 2.6719 52 1 5.9811 -0.3814 1.4455 53 1 5.9570 0.9201 2.6594 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045924064.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:59 Heat of formation + Delta-G solvation = -45.694171 kcal Electronic energy + Delta-G solvation = -33222.434205 eV Core-core repulsion = 29287.946550 eV Total energy + Delta-G solvation = -3934.487655 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.52650 -40.84305 -38.99471 -37.62248 -36.90165 -35.09897 -34.27570 -32.31669 -30.40749 -29.03086 -28.32087 -28.01700 -27.63332 -26.66809 -25.86766 -24.41745 -22.60132 -21.81739 -21.34219 -19.76877 -19.23247 -18.96960 -18.36690 -17.52886 -17.37603 -16.72080 -16.56357 -16.10799 -15.79345 -15.65480 -15.39527 -15.07966 -14.80197 -14.73988 -14.39292 -14.29661 -14.07729 -13.72875 -13.60590 -13.37475 -13.25225 -13.14204 -13.13540 -13.00867 -12.82416 -12.74836 -12.68176 -12.59557 -12.28660 -12.02271 -11.99934 -11.97220 -11.90264 -11.77120 -11.64064 -11.56577 -11.26119 -11.09622 -10.95861 -10.69348 -10.20503 -9.55613 -8.76080 -7.66924 -5.10482 0.39380 1.38546 1.39486 1.43564 1.50701 1.75438 2.52665 2.84460 3.36815 3.47167 3.60781 3.78897 3.80750 3.85711 3.86857 3.98444 4.05663 4.10331 4.23883 4.29454 4.46032 4.53006 4.61949 4.63152 4.65270 4.66431 4.71597 4.78110 4.79241 4.86512 4.89178 4.90674 4.95804 5.00659 5.04674 5.10265 5.16020 5.17323 5.25493 5.26312 5.29244 5.30147 5.39369 5.45514 5.47897 5.58235 5.69785 5.71651 5.90090 5.93886 6.21843 6.50599 7.01945 7.20765 7.85472 8.60015 9.31344 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010049 B = 0.006172 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.598249 B = 4535.708763 C = 6631.103823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.102 4.102 3 C -0.136 4.136 4 C -0.140 4.140 5 C 0.373 3.627 6 O -0.447 6.447 7 C 0.454 3.546 8 O -0.505 6.505 9 N -0.583 5.583 10 C 0.094 3.906 11 C -0.120 4.120 12 C -0.116 4.116 13 C -0.093 4.093 14 C -0.077 4.077 15 C -0.110 4.110 16 C 0.102 3.898 17 N -0.603 5.603 18 C -0.174 4.174 19 H 0.053 0.947 20 C -0.071 4.071 21 N -0.947 5.947 22 Si 0.964 3.036 23 H -0.290 1.290 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.130 3.870 27 C 0.142 3.858 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.043 0.957 35 H 0.101 0.899 36 H 0.046 0.954 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.032 0.968 42 H 0.078 0.922 43 H 0.046 0.954 44 H 0.089 0.911 45 H 0.057 0.943 46 H 0.076 0.924 47 H 0.111 0.889 48 H -0.021 1.021 49 H 0.245 0.755 50 H -0.014 1.014 51 H 0.057 0.943 52 H 0.048 0.952 53 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.913 21.069 4.033 25.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.104 4.104 3 C -0.193 4.193 4 C -0.197 4.197 5 C 0.244 3.756 6 O -0.318 6.318 7 C 0.239 3.761 8 O -0.380 6.380 9 N -0.317 5.317 10 C -0.026 4.026 11 C -0.157 4.157 12 C -0.154 4.154 13 C -0.131 4.131 14 C -0.080 4.080 15 C -0.150 4.150 16 C -0.024 4.024 17 N -0.325 5.325 18 C -0.304 4.304 19 H 0.071 0.929 20 C -0.261 4.261 21 N -0.599 5.599 22 Si 0.794 3.206 23 H -0.218 1.218 24 H -0.217 1.217 25 H -0.208 1.208 26 C 0.004 3.996 27 C 0.019 3.981 28 H 0.087 0.913 29 H 0.114 0.886 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.120 0.880 36 H 0.065 0.935 37 H 0.120 0.880 38 H 0.087 0.913 39 H 0.119 0.881 40 H 0.109 0.891 41 H 0.051 0.949 42 H 0.097 0.903 43 H 0.065 0.935 44 H 0.107 0.893 45 H 0.075 0.925 46 H 0.095 0.905 47 H 0.128 0.872 48 H -0.003 1.003 49 H 0.055 0.945 50 H 0.004 0.996 51 H 0.075 0.925 52 H 0.067 0.933 53 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.945 20.222 3.974 24.337 hybrid contribution 0.230 -1.691 -0.776 1.875 sum -12.715 18.530 3.197 22.700 Atomic orbital electron populations 1.21750 0.90404 1.02421 1.04041 1.21252 0.99034 0.98129 0.91945 1.21905 1.01307 0.90943 1.05141 1.21836 1.01108 1.00003 0.96754 1.25173 0.88120 0.74896 0.87383 1.90427 1.57858 1.37398 1.46127 1.21517 0.90422 0.82757 0.81439 1.91145 1.65966 1.31861 1.49049 1.47807 1.07215 1.36360 1.40366 1.22390 0.93851 0.93186 0.93213 1.21744 1.03632 0.96928 0.93441 1.21050 0.95339 0.97687 1.01279 1.20370 0.97096 1.01583 0.94032 1.21022 0.95423 0.95110 0.96427 1.22546 0.94821 0.97132 1.00476 1.22518 0.91722 0.92370 0.95756 1.45019 1.03218 1.53578 1.30677 1.18920 0.92213 1.20355 0.98880 0.92912 1.25393 0.95202 1.04305 1.01225 1.69538 0.98332 1.55430 1.36610 0.85260 0.76572 0.77318 0.81436 1.21770 1.21669 1.20836 1.22138 0.94876 0.91065 0.91529 1.21547 0.78906 0.99367 0.98249 0.91302 0.88643 0.93667 0.92641 0.88317 0.90163 0.93812 0.87993 0.93502 0.88019 0.91296 0.88070 0.89080 0.94948 0.90306 0.93536 0.89295 0.92464 0.90499 0.87232 1.00278 0.94460 0.99637 0.92475 0.93336 0.87278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 7.76 71.98 0.56 -1.68 16 2 C -0.10 -2.19 0.87 -52.93 -0.05 -2.24 16 3 C -0.14 -1.96 8.23 71.98 0.59 -1.36 16 4 C -0.14 -3.38 8.23 71.98 0.59 -2.79 16 5 C 0.37 11.20 4.08 28.60 0.12 11.31 16 6 O -0.45 -15.10 15.95 -1.52 -0.02 -15.12 16 7 C 0.45 16.14 4.61 87.16 0.40 16.55 16 8 O -0.50 -23.90 12.03 -3.29 -0.04 -23.94 16 9 N -0.58 -16.54 1.99 -820.32 -1.64 -18.18 16 10 C 0.09 1.73 5.84 86.51 0.50 2.24 16 11 C -0.12 -1.81 5.71 30.23 0.17 -1.64 16 12 C -0.12 -2.64 5.45 29.77 0.16 -2.48 16 13 C -0.09 -2.45 3.83 28.62 0.11 -2.34 16 14 C -0.08 -2.73 0.67 -52.50 -0.04 -2.77 16 15 C -0.11 -4.37 6.23 31.50 0.20 -4.17 16 16 C 0.10 5.39 6.70 86.53 0.58 5.97 16 17 N -0.60 -34.24 3.31 -687.98 -2.27 -36.52 16 18 C -0.17 -10.89 8.91 84.03 0.75 -10.14 16 19 H 0.05 3.43 7.77 -2.91 -0.02 3.41 16 20 C -0.07 -4.37 5.49 84.86 0.47 -3.91 16 21 N -0.95 -59.72 10.19 21.65 0.22 -59.50 16 22 Si 0.96 50.80 29.57 68.60 2.03 52.82 16 23 H -0.29 -15.10 7.11 99.48 0.71 -14.40 16 24 H -0.29 -14.90 7.11 99.48 0.71 -14.20 16 25 H -0.28 -14.62 7.11 99.48 0.71 -13.92 16 26 C 0.13 6.14 4.40 86.51 0.38 6.52 16 27 C 0.14 4.49 4.20 87.39 0.37 4.86 16 28 H 0.07 1.10 8.10 -2.39 -0.02 1.08 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.04 0.95 8.10 -2.39 -0.02 0.93 16 31 H 0.05 0.95 7.76 -2.39 -0.02 0.93 16 32 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.05 1.39 7.34 -2.38 -0.02 1.37 16 37 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.07 1.37 5.88 -2.38 -0.01 1.36 16 39 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.09 1.06 7.32 -2.39 -0.02 1.05 16 41 H 0.03 0.98 6.46 -2.39 -0.02 0.96 16 42 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.09 1.78 7.38 -2.39 -0.02 1.77 16 45 H 0.06 2.24 7.53 -2.39 -0.02 2.23 16 46 H 0.08 2.57 7.79 -2.39 -0.02 2.55 16 47 H 0.11 6.57 4.90 -2.39 -0.01 6.56 16 48 H -0.02 -1.13 8.14 -2.38 -0.02 -1.15 16 49 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 50 H -0.01 -0.70 7.96 -2.39 -0.02 -0.72 16 51 H 0.06 2.81 3.43 -2.39 -0.01 2.80 16 52 H 0.05 1.99 7.20 -2.39 -0.02 1.98 16 53 H 0.11 2.50 8.09 -2.39 -0.02 2.48 16 Total: -1.00 -81.50 388.30 5.03 -76.47 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 0.88 Total: 12.03 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 5.87 Total: 11.93 kcal Atomic # 7 Polarization: -110.50 SS G_CDS: -3.69 Total: -114.19 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -0.06 Total: -39.07 kcal Atomic # 14 Polarization: 50.80 SS G_CDS: 2.03 Total: 52.82 kcal Total: -81.50 5.03 -76.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045924064.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.778 kcal (2) G-P(sol) polarization free energy of solvation -81.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds