Wall clock time and date at job start Tue Mar 31 2020 21:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46805 * 2 1 4 4 C 1.50698 * 109.47061 * 119.99864 * 2 1 3 5 5 O 1.21286 * 120.00070 * 249.39558 * 4 2 1 6 6 N 1.34774 * 120.00131 * 69.40057 * 4 2 1 7 7 C 1.46638 * 125.32897 * 175.86556 * 6 4 2 8 8 C 1.53693 * 108.00778 * 179.19959 * 7 6 4 9 9 H 1.08995 * 113.05620 * 106.19205 * 8 7 6 10 10 C 1.53725 * 109.34014 * 232.44648 * 8 7 6 11 11 N 1.46666 * 107.94462 * 93.74400 * 10 8 7 12 12 C 1.36943 * 125.33897 * 179.45168 * 11 10 8 13 13 H 1.08004 * 119.99960 * 0.02562 * 12 11 10 14 14 C 1.38811 * 120.00110 * 180.02562 * 12 11 10 15 15 N 1.31619 * 119.99724 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00288 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47042 * 59.99590 * 16 14 12 18 18 H 1.48493 * 109.47232 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46937 * 299.99768 * 16 14 12 20 20 C 1.46776 * 109.32542 * 359.45809 * 11 10 8 21 21 C 1.53969 * 106.62612 * 18.51527 * 20 11 10 22 22 H 1.08998 * 113.01744 * 94.28328 * 21 20 11 23 23 C 1.47614 * 125.43955 * 356.70564 * 6 4 2 24 24 C 1.53004 * 109.47194 * 240.00176 * 2 1 3 25 25 H 1.09003 * 109.47546 * 299.99757 * 24 2 1 26 26 C 1.53092 * 109.47800 * 60.02026 * 24 2 1 27 27 C 1.53188 * 109.15829 * 177.58289 * 26 24 2 28 28 C 1.53179 * 109.04265 * 303.03964 * 27 26 24 29 29 C 1.53086 * 109.16934 * 56.97083 * 28 27 26 30 30 O 1.42896 * 109.47677 * 179.97438 * 24 2 1 31 31 H 1.09004 * 109.46910 * 304.96825 * 1 2 3 32 32 H 1.09003 * 109.46960 * 64.96650 * 1 2 3 33 33 H 1.08995 * 109.46790 * 184.97248 * 1 2 3 34 34 H 1.09004 * 109.46698 * 175.26470 * 3 2 1 35 35 H 1.08998 * 109.46814 * 295.25770 * 3 2 1 36 36 H 1.08995 * 109.46938 * 55.26089 * 3 2 1 37 37 H 1.09006 * 109.75753 * 59.56243 * 7 6 4 38 38 H 1.08994 * 109.76728 * 298.84391 * 7 6 4 39 39 H 1.09008 * 109.77211 * 213.36442 * 10 8 7 40 40 H 1.08996 * 109.77360 * 334.12384 * 10 8 7 41 41 H 0.97000 * 119.99918 * 180.02562 * 15 14 12 42 42 H 1.08998 * 110.02430 * 259.22504 * 20 11 10 43 43 H 1.08997 * 110.03297 * 137.80985 * 20 11 10 44 44 H 1.08996 * 111.08848 * 79.03377 * 23 6 4 45 45 H 1.09000 * 109.35600 * 317.40151 * 23 6 4 46 46 H 1.08996 * 109.52388 * 297.49782 * 26 24 2 47 47 H 1.08999 * 109.52556 * 57.69213 * 26 24 2 48 48 H 1.09001 * 109.54231 * 183.16653 * 27 26 24 49 49 H 1.09002 * 109.60468 * 62.94532 * 27 26 24 50 50 H 1.09003 * 109.52153 * 297.06744 * 28 27 26 51 51 H 1.09001 * 109.51936 * 176.88464 * 28 27 26 52 52 H 1.08996 * 109.48645 * 182.40603 * 29 28 27 53 53 H 1.09006 * 109.47641 * 62.37255 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.5830 -0.0832 2.1105 6 7 1.8698 -2.0426 1.3530 7 6 2.3860 -2.8622 2.4540 8 6 1.9553 -4.3165 2.2062 9 1 2.7754 -4.9544 1.8769 10 6 1.2523 -4.8601 3.4607 11 7 -0.1903 -4.6536 3.2955 12 6 -1.1513 -5.0178 4.2005 13 1 -0.8679 -5.4988 5.1251 14 6 -2.4898 -4.7688 3.9297 15 7 -2.8352 -4.1822 2.8032 16 14 -3.8007 -5.2649 5.1645 17 1 -3.5588 -4.5646 6.4515 18 1 -5.1395 -4.8911 4.6422 19 1 -3.7458 -6.7329 5.3818 20 6 -0.4425 -3.9957 2.0079 21 6 0.8194 -4.2057 1.1512 22 1 0.7516 -5.0762 0.4987 23 6 1.1599 -2.9102 0.3927 24 6 2.0401 -0.7212 -1.2493 25 1 1.6768 -1.7489 -1.2494 26 6 1.5303 0.0007 -2.4994 27 6 2.0942 -0.6910 -3.7444 28 6 3.6237 -0.7006 -3.6613 29 6 4.0524 -1.3954 -2.3663 30 8 3.4690 -0.7208 -1.2497 31 1 -0.3633 0.5890 0.8422 32 1 -0.3633 0.4349 -0.9312 33 1 -0.3633 -1.0238 0.0891 34 1 3.1267 1.4437 0.0848 35 1 1.7476 1.9312 -0.9294 36 1 1.6089 1.9803 0.8445 37 1 1.9727 -2.5114 3.3997 38 1 3.4738 -2.7996 2.4815 39 1 1.4625 -5.9242 3.5693 40 1 1.6031 -4.3229 4.3418 41 1 -3.7704 -4.0078 2.6140 42 1 -0.6169 -2.9306 2.1609 43 1 -1.3050 -4.4491 1.5195 44 1 1.7872 -3.1367 -0.4694 45 1 0.2439 -2.4163 0.0683 46 1 0.4412 -0.0372 -2.5232 47 1 1.8592 1.0396 -2.4797 48 1 1.7808 -0.1485 -4.6364 49 1 1.7252 -1.7156 -3.7923 50 1 3.9951 0.3242 -3.6649 51 1 4.0315 -1.2398 -4.5163 52 1 5.1386 -1.3674 -2.2811 53 1 3.7154 -2.4320 -2.3813 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048824343.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:14 Heat of formation + Delta-G solvation = -69.012622 kcal Electronic energy + Delta-G solvation = -32292.155115 eV Core-core repulsion = 28356.656296 eV Total energy + Delta-G solvation = -3935.498819 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.12372 -40.50076 -39.46222 -36.64370 -36.31691 -34.49376 -34.06492 -31.68108 -31.38015 -30.78741 -28.38566 -27.54076 -27.24483 -25.81863 -25.44880 -24.47126 -22.54917 -21.89611 -20.91405 -20.63248 -20.02402 -18.85304 -18.22193 -17.32133 -17.14004 -16.76566 -16.68552 -16.34235 -15.84648 -15.62564 -15.43482 -15.36021 -14.98050 -14.79288 -14.48758 -14.20781 -13.85642 -13.79798 -13.63817 -13.56141 -13.42526 -13.26426 -13.17071 -13.07573 -12.81742 -12.79179 -12.67226 -12.51827 -12.20461 -12.08927 -11.96203 -11.86063 -11.82025 -11.66885 -11.58958 -11.38131 -11.25603 -11.09152 -10.75889 -10.67936 -10.19461 -9.61398 -8.86891 -7.79962 -5.20536 1.45724 1.48456 1.54495 1.61760 1.99246 2.49301 2.76254 3.25650 3.32728 3.41385 3.54473 3.68896 3.83001 3.92112 3.98089 3.99693 4.05014 4.11013 4.14960 4.17740 4.22361 4.33304 4.38061 4.40536 4.59975 4.63509 4.64673 4.68222 4.73990 4.76204 4.80619 4.85635 4.90516 4.93495 4.96932 4.99459 5.02451 5.05725 5.12727 5.16641 5.23835 5.25849 5.30075 5.35824 5.43158 5.47386 5.49913 5.66898 5.82224 6.29191 6.34946 6.53138 7.12745 7.13962 7.80641 8.41766 9.23833 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017126 B = 0.003397 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.592037 B = 8241.080905 C = 8430.634565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.064 4.064 3 C -0.117 4.117 4 C 0.536 3.464 5 O -0.592 6.592 6 N -0.606 5.606 7 C 0.122 3.878 8 C -0.091 4.091 9 H 0.132 0.868 10 C 0.137 3.863 11 N -0.624 5.624 12 C -0.246 4.246 13 H 0.077 0.923 14 C -0.060 4.060 15 N -0.944 5.944 16 Si 0.976 3.024 17 H -0.285 1.285 18 H -0.291 1.291 19 H -0.274 1.274 20 C 0.183 3.817 21 C -0.114 4.114 22 H 0.121 0.879 23 C 0.109 3.891 24 C 0.091 3.909 25 H 0.080 0.920 26 C -0.151 4.151 27 C -0.121 4.121 28 C -0.151 4.151 29 C 0.054 3.946 30 O -0.398 6.398 31 H 0.052 0.948 32 H 0.107 0.893 33 H 0.064 0.936 34 H 0.048 0.952 35 H 0.092 0.908 36 H 0.045 0.955 37 H 0.031 0.969 38 H 0.071 0.929 39 H 0.037 0.963 40 H 0.014 0.986 41 H 0.247 0.753 42 H -0.020 1.020 43 H 0.062 0.938 44 H 0.101 0.899 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.077 0.923 48 H 0.081 0.919 49 H 0.070 0.930 50 H 0.065 0.935 51 H 0.088 0.912 52 H 0.095 0.905 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.264 5.262 -18.363 22.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.067 4.067 3 C -0.175 4.175 4 C 0.326 3.674 5 O -0.473 6.473 6 N -0.338 5.338 7 C -0.001 4.001 8 C -0.110 4.110 9 H 0.150 0.850 10 C 0.012 3.988 11 N -0.351 5.351 12 C -0.375 4.375 13 H 0.095 0.905 14 C -0.253 4.253 15 N -0.593 5.593 16 Si 0.804 3.196 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.200 1.200 20 C 0.058 3.942 21 C -0.133 4.133 22 H 0.139 0.861 23 C -0.012 4.012 24 C 0.033 3.967 25 H 0.098 0.902 26 C -0.189 4.189 27 C -0.158 4.158 28 C -0.189 4.189 29 C -0.023 4.023 30 O -0.318 6.318 31 H 0.071 0.929 32 H 0.125 0.875 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.110 0.890 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.089 0.911 39 H 0.055 0.945 40 H 0.032 0.968 41 H 0.057 0.943 42 H -0.002 1.002 43 H 0.080 0.920 44 H 0.118 0.882 45 H 0.103 0.897 46 H 0.110 0.890 47 H 0.095 0.905 48 H 0.100 0.900 49 H 0.089 0.911 50 H 0.084 0.916 51 H 0.107 0.893 52 H 0.114 0.886 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.456 5.760 -17.721 21.874 hybrid contribution -0.942 -0.157 1.320 1.629 sum 10.514 5.602 -16.401 20.271 Atomic orbital electron populations 1.22089 0.90658 1.03350 1.04418 1.20769 0.97578 0.97127 0.91204 1.21608 1.00968 0.92434 1.02468 1.20793 0.77782 0.80368 0.88408 1.90619 1.46261 1.66124 1.44322 1.48407 1.54635 1.06432 1.24347 1.21729 0.98332 0.90396 0.89599 1.22743 0.98385 0.94393 0.95481 0.84980 1.21338 0.84074 0.97878 0.95503 1.44552 1.01269 1.69927 1.19302 1.19378 0.86978 1.32462 0.98654 0.90536 1.25549 0.98883 1.01301 0.99584 1.70079 1.15818 1.48390 1.24983 0.85196 0.78166 0.78174 0.78036 1.21184 1.21679 1.20024 1.21163 0.94763 0.93263 0.85022 1.23239 0.95278 0.98072 0.96740 0.86089 1.22583 0.96898 0.89960 0.91808 1.22388 0.81663 0.99580 0.93036 0.90233 1.22350 1.02191 1.00683 0.93648 1.21611 0.95003 1.01532 0.97684 1.22156 0.96808 1.01840 0.98081 1.22744 0.98625 0.95371 0.85522 1.87965 1.19394 1.77949 1.46474 0.92930 0.87477 0.91714 0.93301 0.88980 0.93539 0.95012 0.91081 0.94515 0.96774 0.94304 1.00183 0.92009 0.88182 0.89684 0.89035 0.90492 0.90018 0.91114 0.91624 0.89314 0.88648 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 8.13 71.98 0.59 -3.04 16 2 C -0.06 -1.70 0.36 -52.92 -0.02 -1.72 16 3 C -0.12 -3.03 7.34 71.98 0.53 -2.50 16 4 C 0.54 19.42 6.22 87.66 0.55 19.96 16 5 O -0.59 -26.44 16.34 -3.05 -0.05 -26.49 16 6 N -0.61 -20.63 3.30 -815.47 -2.69 -23.32 16 7 C 0.12 4.35 6.22 86.59 0.54 4.89 16 8 C -0.09 -2.91 4.01 -9.48 -0.04 -2.95 16 9 H 0.13 3.19 8.14 -2.39 -0.02 3.17 16 10 C 0.14 5.62 6.62 86.59 0.57 6.20 16 11 N -0.62 -32.01 3.38 -697.57 -2.36 -34.37 16 12 C -0.25 -13.89 10.25 84.03 0.86 -13.03 16 13 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 14 C -0.06 -3.39 5.48 84.86 0.47 -2.93 16 15 N -0.94 -55.19 10.16 21.65 0.22 -54.97 16 16 Si 0.98 45.78 29.55 68.60 2.03 47.81 16 17 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 18 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 20 C 0.18 8.61 4.94 86.65 0.43 9.03 16 21 C -0.11 -3.73 4.12 -9.32 -0.04 -3.77 16 22 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 23 C 0.11 3.05 4.17 86.48 0.36 3.41 16 24 C 0.09 1.90 1.61 30.63 0.05 1.95 16 25 H 0.08 1.60 4.04 -2.39 -0.01 1.59 16 26 C -0.15 -2.24 4.71 30.69 0.14 -2.10 16 27 C -0.12 -1.41 6.03 30.72 0.19 -1.23 16 28 C -0.15 -1.85 6.14 30.68 0.19 -1.66 16 29 C 0.05 0.87 6.84 72.01 0.49 1.37 16 30 O -0.40 -9.43 9.44 -148.98 -1.41 -10.84 16 31 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.11 1.83 6.23 -2.39 -0.01 1.81 16 33 H 0.06 1.74 5.00 -2.39 -0.01 1.72 16 34 H 0.05 1.43 7.78 -2.38 -0.02 1.41 16 35 H 0.09 1.74 6.14 -2.39 -0.01 1.73 16 36 H 0.05 1.31 8.12 -2.39 -0.02 1.29 16 37 H 0.03 1.37 7.29 -2.38 -0.02 1.35 16 38 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 40 H 0.01 0.61 7.44 -2.39 -0.02 0.60 16 41 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 42 H -0.02 -1.07 7.75 -2.39 -0.02 -1.08 16 43 H 0.06 3.28 6.19 -2.39 -0.01 3.27 16 44 H 0.10 2.13 6.51 -2.39 -0.02 2.11 16 45 H 0.09 2.39 4.60 -2.39 -0.01 2.38 16 46 H 0.09 1.14 6.46 -2.39 -0.02 1.12 16 47 H 0.08 1.15 6.21 -2.39 -0.01 1.14 16 48 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 51 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 52 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 53 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 Total: -1.00 -74.91 382.16 2.49 -72.41 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.90 Total: 17.88 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 5.85 Total: 11.89 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -4.83 Total: -112.66 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -1.46 Total: -37.33 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -74.91 2.49 -72.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048824343.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.401 kcal (2) G-P(sol) polarization free energy of solvation -74.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds