Wall clock time and date at job start Tue Mar 31 2020 21:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47225 * 2 1 4 4 C 1.53001 * 109.47197 * 180.02562 * 3 2 1 5 5 H 1.09001 * 110.53587 * 307.61204 * 4 3 2 6 6 C 1.54887 * 110.48548 * 70.22398 * 4 3 2 7 7 C 1.54893 * 102.74533 * 156.62347 * 6 4 3 8 8 C 1.54266 * 104.19500 * 322.05712 * 7 6 4 9 9 C 1.53872 * 106.60044 * 23.61099 * 8 7 6 10 10 H 1.09003 * 110.03622 * 240.71485 * 9 8 7 11 11 C 1.50699 * 110.03502 * 119.28320 * 9 8 7 12 12 O 1.21279 * 120.00093 * 242.83701 * 11 9 8 13 13 N 1.34782 * 119.99944 * 62.83425 * 11 9 8 14 14 C 1.47128 * 121.05108 * 359.72387 * 13 11 9 15 15 C 1.52764 * 108.97548 * 232.16937 * 14 13 11 16 16 O 1.43105 * 109.42074 * 306.12162 * 15 14 13 17 17 C 1.42494 * 113.97214 * 59.82850 * 16 15 14 18 18 C 1.53469 * 113.76068 * 73.17291 * 17 16 15 19 19 N 1.47670 * 85.96952 * 91.28714 * 18 17 16 20 20 C 1.36936 * 134.45686 * 204.30430 * 19 18 17 21 21 H 1.07999 * 120.00182 * 179.97438 * 20 19 18 22 22 C 1.38813 * 119.99983 * 359.97438 * 20 19 18 23 23 N 1.31624 * 120.00132 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00145 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47239 * 60.00156 * 24 22 20 26 26 H 1.48502 * 109.47248 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47488 * 299.99952 * 24 22 20 28 28 C 1.47673 * 91.08517 * 24.29195 * 19 18 17 29 29 C 1.47332 * 121.05642 * 180.02562 * 13 11 9 30 30 H 1.08996 * 109.47299 * 59.99480 * 1 2 3 31 31 H 1.08999 * 109.47174 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46716 * 299.99596 * 1 2 3 33 33 H 1.09005 * 109.47163 * 240.00115 * 2 1 3 34 34 H 1.08996 * 109.47299 * 120.00520 * 2 1 3 35 35 H 1.09005 * 109.46956 * 59.99988 * 3 2 1 36 36 H 1.08994 * 109.46898 * 300.00432 * 3 2 1 37 37 H 1.09001 * 110.75744 * 274.93249 * 6 4 3 38 38 H 1.09000 * 110.75698 * 38.31067 * 6 4 3 39 39 H 1.09002 * 110.48578 * 203.38190 * 7 6 4 40 40 H 1.08998 * 110.60430 * 80.79077 * 7 6 4 41 41 H 1.09002 * 110.02957 * 264.32709 * 8 7 6 42 42 H 1.09000 * 110.07144 * 142.92082 * 8 7 6 43 43 H 1.08997 * 109.59867 * 351.99972 * 14 13 11 44 44 H 1.09001 * 109.59613 * 112.45620 * 14 13 11 45 45 H 1.08998 * 109.56700 * 186.06919 * 15 14 13 46 46 H 1.08996 * 109.36414 * 66.04771 * 15 14 13 47 47 H 1.09003 * 113.78973 * 205.55158 * 18 17 16 48 48 H 1.09000 * 113.79515 * 337.02008 * 18 17 16 49 49 H 0.96995 * 120.00399 * 179.97438 * 23 22 20 50 50 H 1.09006 * 113.78976 * 221.43696 * 28 19 18 51 51 H 1.09003 * 113.89938 * 89.98442 * 28 19 18 52 52 H 1.09006 * 109.75058 * 251.23951 * 29 13 11 53 53 H 1.08999 * 109.75070 * 11.91896 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9527 0.8194 0.8077 6 6 4.1115 0.9518 -1.3663 7 6 5.5301 1.5718 -1.4141 8 6 5.3563 2.9643 -0.7734 9 6 4.1100 2.8821 0.1253 10 1 3.3575 3.5941 -0.2136 11 6 4.4855 3.1692 1.5563 12 8 4.3408 2.3144 2.4044 13 7 4.9823 4.3758 1.8935 14 6 5.1732 5.4275 0.8825 15 6 6.6072 5.9466 0.9703 16 8 6.8850 6.3522 2.3143 17 6 6.7522 5.3069 3.2736 18 6 7.8858 4.2736 3.2230 19 7 8.5632 5.1220 4.2240 20 6 9.8681 5.3158 4.5915 21 1 10.1093 6.0154 5.3781 22 6 10.8807 4.6129 3.9531 23 7 10.5866 3.7599 2.9949 24 14 12.6606 4.8778 4.4539 25 1 12.8290 4.5271 5.8871 26 1 13.5413 4.0143 3.6268 27 1 13.0266 6.3019 4.2465 28 6 7.2697 5.6779 4.6696 29 6 5.3576 4.6814 3.2851 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9564 0.8900 36 1 1.6766 1.9563 -0.8899 37 1 4.1646 -0.1366 -1.3923 38 1 3.4972 1.3294 -2.1837 39 1 5.8706 1.6662 -2.4453 40 1 6.2313 0.9705 -0.8354 41 1 5.2086 3.7162 -1.5486 42 1 6.2326 3.2127 -0.1748 43 1 4.9950 5.0162 -0.1110 44 1 4.4790 6.2465 1.0713 45 1 6.7288 6.7982 0.3010 46 1 7.2968 5.1542 0.6797 47 1 7.6019 3.2908 3.5994 48 1 8.3995 4.2310 2.2626 49 1 11.2942 3.2690 2.5485 50 1 7.2941 6.7511 4.8587 51 1 6.8012 5.1141 5.4764 52 1 4.6427 5.3839 3.7137 53 1 5.3698 3.7638 3.8733 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053320338.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:32 Heat of formation + Delta-G solvation = -56.104149 kcal Electronic energy + Delta-G solvation = -31320.026395 eV Core-core repulsion = 27385.087329 eV Total energy + Delta-G solvation = -3934.939066 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.98845 -40.66510 -38.57941 -37.78880 -35.87553 -35.24967 -34.31449 -31.78716 -30.69394 -30.29559 -29.34679 -27.51848 -26.89253 -25.99112 -24.65546 -23.77458 -22.48428 -21.98942 -21.11733 -20.52990 -19.72134 -18.86157 -18.11937 -17.59080 -17.21222 -16.88085 -16.59344 -16.14809 -16.00512 -15.77252 -15.65036 -15.50636 -15.01795 -14.88863 -14.66345 -14.52504 -14.17011 -13.98561 -13.86056 -13.44425 -13.38661 -13.17983 -13.00724 -12.92033 -12.75727 -12.60206 -12.41014 -12.23884 -12.10284 -12.00464 -11.92876 -11.75392 -11.69894 -11.60608 -11.50562 -11.37119 -11.26956 -11.20650 -10.98669 -10.81978 -10.66515 -9.53614 -8.98183 -7.93494 -5.28485 1.41383 1.46172 1.51989 1.58759 1.88993 2.43414 2.62968 3.23146 3.31033 3.37452 3.54048 3.61904 3.63977 3.76919 3.94244 4.08655 4.15081 4.15702 4.23249 4.29703 4.34881 4.44601 4.48866 4.55831 4.58894 4.60983 4.62798 4.66774 4.66896 4.74049 4.78393 4.80579 4.86919 4.92210 4.97093 5.01029 5.05881 5.08755 5.09892 5.19627 5.21012 5.23253 5.28544 5.33364 5.38947 5.43786 5.46909 5.50371 5.62417 5.85220 6.31171 6.38190 6.85193 7.13559 7.55297 8.48538 9.22835 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.002984 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.752418 B = 9380.220259 C = 9802.883214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.102 4.102 4 C -0.081 4.081 5 H 0.054 0.946 6 C -0.107 4.107 7 C -0.127 4.127 8 C -0.118 4.118 9 C -0.100 4.100 10 H 0.130 0.870 11 C 0.514 3.486 12 O -0.584 6.584 13 N -0.613 5.613 14 C 0.074 3.926 15 C 0.039 3.961 16 O -0.361 6.361 17 C 0.081 3.919 18 C 0.154 3.846 19 N -0.634 5.634 20 C -0.235 4.235 21 H 0.087 0.913 22 C -0.070 4.070 23 N -0.956 5.956 24 Si 0.984 3.016 25 H -0.277 1.277 26 H -0.294 1.294 27 H -0.273 1.273 28 C 0.133 3.867 29 C 0.107 3.893 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.041 0.959 35 H 0.044 0.956 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.039 0.961 41 H 0.111 0.889 42 H 0.042 0.958 43 H 0.127 0.873 44 H 0.102 0.898 45 H 0.135 0.865 46 H 0.031 0.969 47 H 0.004 0.996 48 H 0.041 0.959 49 H 0.247 0.753 50 H 0.068 0.932 51 H 0.069 0.931 52 H 0.097 0.903 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.671 -0.034 -13.832 24.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.139 4.139 4 C -0.100 4.100 5 H 0.073 0.927 6 C -0.145 4.145 7 C -0.165 4.165 8 C -0.156 4.156 9 C -0.121 4.121 10 H 0.148 0.852 11 C 0.304 3.696 12 O -0.464 6.464 13 N -0.346 5.346 14 C -0.047 4.047 15 C -0.038 4.038 16 O -0.279 6.279 17 C 0.039 3.961 18 C 0.028 3.972 19 N -0.361 5.361 20 C -0.363 4.363 21 H 0.105 0.895 22 C -0.263 4.263 23 N -0.605 5.605 24 Si 0.811 3.189 25 H -0.203 1.203 26 H -0.220 1.220 27 H -0.199 1.199 28 C 0.008 3.992 29 C -0.017 4.017 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.058 0.942 41 H 0.129 0.871 42 H 0.061 0.939 43 H 0.145 0.855 44 H 0.120 0.880 45 H 0.153 0.847 46 H 0.049 0.951 47 H 0.022 0.978 48 H 0.059 0.941 49 H 0.056 0.944 50 H 0.086 0.914 51 H 0.086 0.914 52 H 0.115 0.885 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.358 -0.313 -13.338 24.340 hybrid contribution 1.594 -0.633 0.866 1.921 sum -18.764 -0.946 -12.472 22.551 Atomic orbital electron populations 1.21760 0.95144 1.01864 1.01961 1.21514 0.96357 0.96645 1.01648 1.21575 0.93105 0.97289 1.01975 1.21948 0.96111 0.93562 0.98409 0.92745 1.22548 0.95322 1.00410 0.96190 1.22368 0.97585 0.95263 1.01266 1.22294 0.95154 0.99629 0.98509 1.22105 1.00071 1.00527 0.89432 0.85210 1.21408 0.75697 0.80314 0.92168 1.90649 1.56061 1.46306 1.53366 1.48266 1.63204 1.13977 1.09126 1.22657 0.97234 0.91174 0.93657 1.23097 0.95163 1.01678 0.83848 1.87883 1.90270 1.33295 1.16502 1.23131 0.92370 0.89171 0.91465 1.22472 0.89694 0.91522 0.93488 1.46185 1.00692 1.47297 1.41891 1.19408 0.81691 1.19574 1.15606 0.89535 1.25704 1.02384 0.99053 0.99147 1.70033 1.32188 1.30536 1.27729 0.85077 0.78826 0.77563 0.77409 1.20256 1.21997 1.19878 1.22715 0.84688 0.99127 0.92676 1.21969 0.94768 1.00909 0.84051 0.91592 0.92478 0.93465 0.90966 0.94000 0.93668 0.89643 0.91392 0.88680 0.89304 0.94172 0.87097 0.93935 0.85482 0.87990 0.84703 0.95057 0.97825 0.94112 0.94389 0.91401 0.91400 0.88475 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 71.98 0.71 -1.33 16 2 C -0.12 -2.04 5.81 30.59 0.18 -1.86 16 3 C -0.10 -1.73 4.56 30.60 0.14 -1.60 16 4 C -0.08 -1.70 2.18 -9.72 -0.02 -1.72 16 5 H 0.05 1.60 6.88 -2.39 -0.02 1.58 16 6 C -0.11 -1.71 5.67 31.89 0.18 -1.52 16 7 C -0.13 -2.38 6.83 31.67 0.22 -2.16 16 8 C -0.12 -2.24 4.68 31.32 0.15 -2.09 16 9 C -0.10 -2.05 2.00 -10.82 -0.02 -2.07 16 10 H 0.13 1.80 7.64 -2.39 -0.02 1.78 16 11 C 0.51 15.59 6.87 87.66 0.60 16.19 16 12 O -0.58 -23.02 14.90 -3.03 -0.05 -23.07 16 13 N -0.61 -17.64 3.01 -818.80 -2.46 -20.10 16 14 C 0.07 1.54 5.81 86.18 0.50 2.05 16 15 C 0.04 1.09 6.87 71.90 0.49 1.58 16 16 O -0.36 -13.66 10.52 -148.98 -1.57 -15.23 16 17 C 0.08 3.22 1.21 -10.50 -0.01 3.20 16 18 C 0.15 8.02 6.65 86.31 0.57 8.60 16 19 N -0.63 -34.86 3.70 -729.24 -2.70 -37.56 16 20 C -0.23 -13.88 10.70 84.03 0.90 -12.98 16 21 H 0.09 4.83 7.83 -2.91 -0.02 4.81 16 22 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 23 N -0.96 -60.55 11.39 21.65 0.25 -60.30 16 24 Si 0.98 47.51 29.55 68.60 2.03 49.54 16 25 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 26 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 27 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 28 C 0.13 5.68 8.33 86.30 0.72 6.40 16 29 C 0.11 3.57 5.78 86.17 0.50 4.06 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.07 1.02 7.55 -2.38 -0.02 1.01 16 34 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.09 1.03 8.02 -2.39 -0.02 1.01 16 37 H 0.07 1.09 8.06 -2.39 -0.02 1.07 16 38 H 0.09 1.04 7.96 -2.39 -0.02 1.02 16 39 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.11 1.28 7.55 -2.39 -0.02 1.26 16 42 H 0.04 1.10 7.08 -2.39 -0.02 1.08 16 43 H 0.13 1.82 4.40 -2.39 -0.01 1.81 16 44 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.14 2.81 8.14 -2.39 -0.02 2.79 16 46 H 0.03 1.06 7.09 -2.39 -0.02 1.04 16 47 H 0.00 0.23 7.94 -2.39 -0.02 0.21 16 48 H 0.04 2.37 6.31 -2.39 -0.02 2.36 16 49 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 50 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 51 H 0.07 2.65 8.09 -2.39 -0.02 2.63 16 52 H 0.10 2.69 8.14 -2.38 -0.02 2.68 16 53 H 0.08 2.97 6.91 -2.39 -0.02 2.95 16 Total: -1.00 -79.98 400.94 2.64 -77.34 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.87 Total: 18.35 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 6.27 Total: 11.02 kcal Atomic # 7 Polarization: -113.04 SS G_CDS: -4.92 Total: -117.96 kcal Atomic # 8 Polarization: -36.68 SS G_CDS: -1.61 Total: -38.29 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Total: -79.98 2.64 -77.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053320338.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.231 kcal (2) G-P(sol) polarization free energy of solvation -79.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds