Wall clock time and date at job start Tue Mar 31 2020 21:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47351 * 2 1 4 4 C 1.52998 * 109.47069 * 179.97438 * 3 2 1 5 5 H 1.08999 * 110.81475 * 51.67132 * 4 3 2 6 6 C 1.54891 * 110.75823 * 288.33358 * 4 3 2 7 7 C 1.54270 * 104.19352 * 203.74241 * 6 4 3 8 8 C 1.53878 * 106.59966 * 23.61185 * 7 6 4 9 9 C 1.54267 * 106.59719 * 359.97438 * 8 7 6 10 10 H 1.09002 * 110.48482 * 95.07513 * 9 8 7 11 11 C 1.50700 * 110.48221 * 217.58146 * 9 8 7 12 12 O 1.21281 * 119.99639 * 116.76250 * 11 9 8 13 13 N 1.34779 * 120.00106 * 296.75577 * 11 9 8 14 14 C 1.47127 * 121.05385 * 359.72240 * 13 11 9 15 15 C 1.52800 * 108.95243 * 232.19897 * 14 13 11 16 16 O 1.43107 * 109.41759 * 306.09600 * 15 14 13 17 17 C 1.42488 * 113.97338 * 59.83923 * 16 15 14 18 18 C 1.53467 * 113.76576 * 73.18812 * 17 16 15 19 19 N 1.47674 * 85.96666 * 91.28231 * 18 17 16 20 20 C 1.36940 * 134.45195 * 204.33576 * 19 18 17 21 21 H 1.07999 * 119.99127 * 173.43222 * 20 19 18 22 22 C 1.38805 * 120.00304 * 353.43310 * 20 19 18 23 23 N 1.31617 * 120.00311 * 5.07684 * 22 20 19 24 24 Si 1.86805 * 120.00082 * 185.06919 * 22 20 19 25 25 H 1.48498 * 109.47114 * 94.98713 * 24 22 20 26 26 H 1.48493 * 109.47186 * 214.99148 * 24 22 20 27 27 H 1.48504 * 109.46877 * 334.99043 * 24 22 20 28 28 C 1.47669 * 91.08586 * 24.29600 * 19 18 17 29 29 C 1.47341 * 121.05087 * 180.02562 * 13 11 9 30 30 H 1.09000 * 109.47081 * 59.99799 * 1 2 3 31 31 H 1.08999 * 109.46972 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47153 * 299.99892 * 1 2 3 33 33 H 1.09008 * 109.46833 * 240.00027 * 2 1 3 34 34 H 1.09008 * 109.47094 * 120.00844 * 2 1 3 35 35 H 1.09001 * 109.46586 * 60.00589 * 3 2 1 36 36 H 1.08993 * 109.47561 * 300.00002 * 3 2 1 37 37 H 1.09000 * 110.48604 * 85.06532 * 6 4 3 38 38 H 1.08996 * 110.59817 * 322.47152 * 6 4 3 39 39 H 1.08995 * 110.03279 * 264.32392 * 7 6 4 40 40 H 1.09009 * 110.02917 * 142.89386 * 7 6 4 41 41 H 1.09006 * 110.02854 * 240.71386 * 8 7 6 42 42 H 1.08993 * 110.03297 * 119.28378 * 8 7 6 43 43 H 1.09000 * 109.59251 * 352.02443 * 14 13 11 44 44 H 1.09004 * 109.59146 * 112.48168 * 14 13 11 45 45 H 1.08999 * 109.56140 * 186.04682 * 15 14 13 46 46 H 1.09006 * 109.37322 * 66.03086 * 15 14 13 47 47 H 1.08992 * 113.79680 * 205.54690 * 18 17 16 48 48 H 1.08999 * 113.78933 * 337.02376 * 18 17 16 49 49 H 0.96994 * 120.00445 * 180.02562 * 23 22 20 50 50 H 1.08998 * 113.79395 * 221.43351 * 28 19 18 51 51 H 1.09003 * 113.89399 * 89.97994 * 28 19 18 52 52 H 1.09004 * 109.74758 * 251.22138 * 29 13 11 53 53 H 1.08999 * 109.75250 * 11.89949 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9577 0.8104 -0.7983 6 6 4.1184 0.9870 1.3758 7 6 5.5326 1.5999 1.4409 8 6 5.5330 2.8068 0.4864 9 6 4.1192 2.8848 -0.1259 10 1 3.4972 3.5801 0.4378 11 6 4.1933 3.2995 -1.5729 12 8 3.8125 2.5428 -2.4407 13 7 4.6827 4.5113 -1.9024 14 6 5.1454 5.4498 -0.8681 15 6 4.4588 6.7985 -1.0790 16 8 4.6749 7.2373 -2.4239 17 6 4.1693 6.3445 -3.4125 18 6 2.6390 6.3523 -3.5283 19 7 2.8260 7.3994 -4.5527 20 6 2.0450 8.4116 -5.0432 21 1 2.4607 9.1259 -5.7384 22 6 0.7191 8.5196 -4.6468 23 7 0.2399 7.7115 -3.7250 24 14 -0.3851 9.8120 -5.4214 25 1 -1.1406 9.2070 -6.5476 26 1 -1.3382 10.3230 -4.4038 27 1 0.4459 10.9334 -5.9286 28 6 4.1931 6.9180 -4.8355 29 6 4.7652 4.9406 -3.3095 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8901 34 1 1.8934 -0.5140 0.8900 35 1 1.6768 1.9562 0.8901 36 1 1.6768 1.9563 -0.8899 37 1 4.1714 -0.1007 1.4241 38 1 3.4974 1.3741 2.1836 39 1 6.2722 0.8676 1.1172 40 1 5.7511 1.9276 2.4573 41 1 6.2728 2.6602 -0.3006 42 1 5.7517 3.7202 1.0395 43 1 4.8907 5.0616 0.1180 44 1 6.2252 5.5764 -0.9461 45 1 4.8730 7.5311 -0.3863 46 1 3.3890 6.6918 -0.8986 47 1 2.2228 5.4239 -3.9192 48 1 2.1318 6.7024 -2.6292 49 1 -0.6867 7.7867 -3.4482 50 1 4.9207 7.7174 -4.9752 51 1 4.2411 6.1578 -5.6152 52 1 5.8074 4.9589 -3.6284 53 1 4.1999 4.2528 -3.9382 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053320340.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:36 Heat of formation + Delta-G solvation = -57.761097 kcal Electronic energy + Delta-G solvation = -31261.365684 eV Core-core repulsion = 27326.354768 eV Total energy + Delta-G solvation = -3935.010916 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.93226 -40.64948 -38.58365 -37.77097 -35.87967 -35.26771 -34.32444 -31.76128 -30.66542 -30.34816 -29.31423 -27.50713 -26.89344 -26.06691 -24.65537 -23.81528 -22.49301 -21.94575 -20.94983 -20.41131 -19.93762 -18.84511 -18.21927 -17.58158 -17.16740 -16.97633 -16.53418 -16.11622 -16.00508 -15.73035 -15.65272 -15.41598 -14.99797 -14.91253 -14.66274 -14.55390 -14.19284 -13.97615 -13.84113 -13.44747 -13.40816 -13.22672 -13.01095 -12.90975 -12.79893 -12.65669 -12.52952 -12.24486 -12.09706 -12.01558 -11.92532 -11.75713 -11.73464 -11.59623 -11.45507 -11.32453 -11.24891 -11.15821 -11.00060 -10.81805 -10.66222 -9.53069 -8.97496 -7.95689 -5.29556 1.41455 1.44492 1.53414 1.60721 1.89172 2.43004 2.62737 3.21322 3.31723 3.37443 3.56754 3.62274 3.63716 3.76653 3.93734 4.05623 4.13263 4.18122 4.22676 4.30254 4.34531 4.43985 4.48739 4.53866 4.59138 4.61684 4.62268 4.63950 4.67839 4.76534 4.77948 4.79410 4.87004 4.93205 4.95806 4.97748 5.05252 5.10850 5.12105 5.16682 5.21868 5.23361 5.29608 5.34078 5.38044 5.42797 5.46505 5.51380 5.59554 5.84324 6.30900 6.38509 6.84700 7.14602 7.54604 8.48601 9.21786 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012702 B = 0.003357 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.800568 B = 8339.239550 C = 9740.479924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.110 4.110 4 C -0.071 4.071 5 H 0.062 0.938 6 C -0.113 4.113 7 C -0.119 4.119 8 C -0.110 4.110 9 C -0.109 4.109 10 H 0.110 0.890 11 C 0.516 3.484 12 O -0.582 6.582 13 N -0.613 5.613 14 C 0.078 3.922 15 C 0.037 3.963 16 O -0.361 6.361 17 C 0.080 3.920 18 C 0.157 3.843 19 N -0.634 5.634 20 C -0.235 4.235 21 H 0.087 0.913 22 C -0.068 4.068 23 N -0.956 5.956 24 Si 0.981 3.019 25 H -0.288 1.288 26 H -0.293 1.293 27 H -0.263 1.263 28 C 0.133 3.867 29 C 0.108 3.892 30 H 0.035 0.965 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.027 0.973 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.099 0.901 43 H 0.125 0.875 44 H 0.103 0.897 45 H 0.136 0.864 46 H 0.030 0.970 47 H 0.006 0.994 48 H 0.035 0.965 49 H 0.248 0.752 50 H 0.068 0.932 51 H 0.068 0.932 52 H 0.097 0.903 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.227 -13.182 15.853 24.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.148 4.148 4 C -0.089 4.089 5 H 0.081 0.919 6 C -0.150 4.150 7 C -0.156 4.156 8 C -0.148 4.148 9 C -0.130 4.130 10 H 0.128 0.872 11 C 0.306 3.694 12 O -0.462 6.462 13 N -0.346 5.346 14 C -0.044 4.044 15 C -0.040 4.040 16 O -0.280 6.280 17 C 0.038 3.962 18 C 0.031 3.969 19 N -0.361 5.361 20 C -0.363 4.363 21 H 0.105 0.895 22 C -0.260 4.260 23 N -0.604 5.604 24 Si 0.809 3.191 25 H -0.215 1.215 26 H -0.220 1.220 27 H -0.188 1.188 28 C 0.008 3.992 29 C -0.016 4.016 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.046 0.954 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.078 0.922 42 H 0.117 0.883 43 H 0.143 0.857 44 H 0.121 0.879 45 H 0.154 0.846 46 H 0.048 0.952 47 H 0.024 0.976 48 H 0.054 0.946 49 H 0.057 0.943 50 H 0.086 0.914 51 H 0.086 0.914 52 H 0.115 0.885 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.873 -13.196 15.317 23.967 hybrid contribution -1.556 0.545 -1.034 1.946 sum 11.317 -12.651 14.283 22.184 Atomic orbital electron populations 1.21793 0.95995 1.01960 1.01407 1.21468 0.95742 0.96130 1.02089 1.21571 0.94884 0.97501 1.00822 1.21951 0.94739 0.93552 0.98706 0.91909 1.22428 0.96349 1.01046 0.95188 1.22118 0.96919 0.96514 1.00076 1.22249 0.92716 1.00971 0.98858 1.22319 1.00888 0.99504 0.90270 0.87202 1.21318 0.75194 0.80324 0.92536 1.90660 1.49646 1.53212 1.52685 1.48288 1.63046 1.15919 1.07352 1.22663 1.00758 0.88402 0.92566 1.23137 0.99528 0.97461 0.83829 1.87881 1.78886 1.46230 1.14958 1.23159 0.93300 0.89001 0.90756 1.22411 0.92964 0.89400 0.92121 1.46165 1.13849 1.31888 1.44155 1.19455 0.91908 1.03334 1.21610 0.89482 1.25705 0.98193 1.01997 1.00155 1.70045 1.14471 1.42333 1.33596 0.85018 0.78452 0.78420 0.77221 1.21488 1.21951 1.18773 1.22712 0.87163 0.96973 0.92320 1.21961 1.02220 0.93801 0.83650 0.94546 0.91733 0.92058 0.93355 0.90075 0.90944 0.95364 0.90729 0.90195 0.91553 0.89452 0.92187 0.88289 0.85675 0.87854 0.84618 0.95166 0.97623 0.94635 0.94342 0.91390 0.91431 0.88503 0.90396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.91 71.98 0.71 -2.33 16 2 C -0.12 -2.34 5.83 30.59 0.18 -2.16 16 3 C -0.11 -2.54 4.71 30.59 0.14 -2.40 16 4 C -0.07 -1.47 1.90 -9.51 -0.02 -1.49 16 5 H 0.06 1.63 7.50 -2.39 -0.02 1.62 16 6 C -0.11 -1.50 5.69 31.67 0.18 -1.32 16 7 C -0.12 -1.31 6.80 31.32 0.21 -1.10 16 8 C -0.11 -1.50 5.24 31.32 0.16 -1.34 16 9 C -0.11 -2.25 1.76 -10.47 -0.02 -2.27 16 10 H 0.11 2.08 7.57 -2.39 -0.02 2.06 16 11 C 0.52 15.60 6.95 87.66 0.61 16.21 16 12 O -0.58 -22.81 15.18 -3.03 -0.05 -22.86 16 13 N -0.61 -17.51 3.03 -818.70 -2.48 -19.99 16 14 C 0.08 1.59 5.78 86.19 0.50 2.09 16 15 C 0.04 1.03 6.87 71.92 0.49 1.53 16 16 O -0.36 -13.55 10.52 -148.98 -1.57 -15.12 16 17 C 0.08 3.17 1.21 -10.50 -0.01 3.16 16 18 C 0.16 8.16 6.56 86.31 0.57 8.73 16 19 N -0.63 -34.78 3.70 -729.33 -2.70 -37.48 16 20 C -0.24 -13.88 10.69 84.03 0.90 -12.99 16 21 H 0.09 4.88 7.83 -2.91 -0.02 4.85 16 22 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 23 N -0.96 -60.67 11.51 21.65 0.25 -60.42 16 24 Si 0.98 47.47 29.56 68.60 2.03 49.50 16 25 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 26 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 27 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 28 C 0.13 5.67 8.33 86.30 0.72 6.39 16 29 C 0.11 3.57 5.78 86.17 0.50 4.06 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.08 1.26 7.65 -2.38 -0.02 1.25 16 35 H 0.07 1.45 7.99 -2.39 -0.02 1.43 16 36 H 0.03 0.87 8.07 -2.39 -0.02 0.85 16 37 H 0.07 0.90 8.09 -2.39 -0.02 0.88 16 38 H 0.08 0.91 7.94 -2.39 -0.02 0.89 16 39 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 41 H 0.06 0.95 7.83 -2.38 -0.02 0.93 16 42 H 0.10 0.85 6.76 -2.39 -0.02 0.84 16 43 H 0.13 1.75 4.56 -2.39 -0.01 1.74 16 44 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 45 H 0.14 2.78 8.14 -2.39 -0.02 2.76 16 46 H 0.03 1.02 7.19 -2.38 -0.02 1.00 16 47 H 0.01 0.34 7.94 -2.39 -0.02 0.32 16 48 H 0.04 2.06 6.51 -2.39 -0.02 2.05 16 49 H 0.25 15.23 8.31 -92.71 -0.77 14.45 16 50 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 51 H 0.07 2.64 8.09 -2.39 -0.02 2.62 16 52 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 53 H 0.08 2.96 6.91 -2.39 -0.02 2.95 16 Total: -1.00 -79.70 402.49 2.65 -77.06 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.87 Total: 18.13 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 6.29 Total: 11.19 kcal Atomic # 7 Polarization: -112.97 SS G_CDS: -4.93 Total: -117.90 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -1.61 Total: -37.98 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -79.70 2.65 -77.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053320340.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.294 kcal (2) G-P(sol) polarization free energy of solvation -79.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds