Wall clock time and date at job start Tue Mar 31 2020 21:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47175 * 2 1 4 4 C 1.53004 * 109.47125 * 180.02562 * 3 2 1 5 5 H 1.09001 * 110.05405 * 306.61648 * 4 3 2 6 6 C 1.54258 * 110.03542 * 68.03336 * 4 3 2 7 7 C 1.54889 * 104.19753 * 142.89651 * 6 4 3 8 8 C 1.54888 * 102.74849 * 322.05835 * 7 6 4 9 9 C 1.53878 * 110.03300 * 185.20202 * 4 3 2 10 10 H 1.08998 * 110.07419 * 121.40338 * 9 4 3 11 11 C 1.50707 * 110.03194 * 359.97438 * 9 4 3 12 12 O 1.21280 * 119.99635 * 272.44250 * 11 9 4 13 13 N 1.34775 * 119.99855 * 92.43976 * 11 9 4 14 14 C 1.47123 * 121.06481 * 0.02562 * 13 11 9 15 15 C 1.53222 * 108.73364 * 232.28813 * 14 13 11 16 16 O 1.43131 * 109.34950 * 305.80363 * 15 14 13 17 17 C 1.42356 * 113.98816 * 59.77754 * 16 15 14 18 18 C 1.52921 * 114.29614 * 74.95129 * 17 16 15 19 19 N 1.47174 * 87.84764 * 88.27309 * 18 17 16 20 20 C 1.36934 * 136.00082 * 206.64799 * 19 18 17 21 21 H 1.08003 * 119.99978 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99690 * 180.27528 * 20 19 18 23 23 N 1.31613 * 120.00370 * 359.72163 * 22 20 19 24 24 Si 1.86802 * 119.99650 * 179.72569 * 22 20 19 25 25 H 1.48498 * 109.47559 * 89.99509 * 24 22 20 26 26 H 1.48501 * 109.47170 * 209.99628 * 24 22 20 27 27 H 1.48500 * 109.47324 * 329.99541 * 24 22 20 28 28 C 1.47175 * 87.99673 * 26.90062 * 19 18 17 29 29 C 1.47363 * 121.05929 * 180.02562 * 13 11 9 30 30 H 1.08999 * 109.47271 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47065 * 300.00294 * 1 2 3 32 32 H 1.09000 * 109.47214 * 59.99715 * 1 2 3 33 33 H 1.08996 * 109.47351 * 240.00052 * 2 1 3 34 34 H 1.09000 * 109.46921 * 119.99561 * 2 1 3 35 35 H 1.09001 * 109.47364 * 59.99889 * 3 2 1 36 36 H 1.09001 * 109.47356 * 299.99693 * 3 2 1 37 37 H 1.08995 * 110.48572 * 24.21665 * 6 4 3 38 38 H 1.09002 * 110.48537 * 261.57347 * 6 4 3 39 39 H 1.08998 * 110.75775 * 203.74255 * 7 6 4 40 40 H 1.09002 * 110.91471 * 80.44364 * 7 6 4 41 41 H 1.09001 * 110.48616 * 279.26623 * 8 7 6 42 42 H 1.09001 * 110.60198 * 156.67851 * 8 7 6 43 43 H 1.08999 * 109.59681 * 112.51267 * 14 13 11 44 44 H 1.09001 * 109.71372 * 352.13476 * 14 13 11 45 45 H 1.09008 * 109.49170 * 185.84577 * 15 14 13 46 46 H 1.08995 * 109.49725 * 65.76775 * 15 14 13 47 47 H 1.08998 * 113.49346 * 333.52856 * 18 17 16 48 48 H 1.09000 * 113.55028 * 203.02695 * 18 17 16 49 49 H 0.96998 * 119.99925 * 180.02562 * 23 22 20 50 50 H 1.08998 * 113.48920 * 87.84623 * 28 19 18 51 51 H 1.09002 * 113.48696 * 218.35059 * 28 19 18 52 52 H 1.09004 * 109.74391 * 12.11978 * 29 13 11 53 53 H 1.09000 * 109.74748 * 251.39901 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9441 0.8316 0.8210 6 6 4.0979 0.9006 -1.3450 7 6 5.3531 1.7606 -1.6347 8 6 4.9271 3.1648 -1.1389 9 6 4.0972 2.8822 0.1304 10 1 4.7269 2.9709 1.0157 11 6 2.9439 3.8483 0.2184 12 8 2.4510 4.2980 -0.7944 13 7 2.4602 4.2124 1.4225 14 6 3.0406 3.6816 2.6658 15 6 1.9140 3.0981 3.5249 16 8 0.9009 4.0909 3.7166 17 6 0.3148 4.5606 2.5073 18 6 -0.6634 3.5796 1.8597 19 7 -1.7251 4.1813 2.6823 20 6 -2.9237 3.7682 3.1997 21 1 -3.2732 2.7628 3.0167 22 6 -3.6926 4.6437 3.9540 23 7 -3.2671 5.8691 4.1767 24 14 -5.3314 4.0826 4.6534 25 1 -5.1201 3.4983 6.0021 26 1 -6.2499 5.2450 4.7559 27 1 -5.9271 3.0585 3.7581 28 6 -0.9363 5.4237 2.6995 29 6 1.3330 5.1548 1.5357 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.3535 1.0357 -2.1295 38 1 4.3692 -0.1511 -1.2522 39 1 5.5715 1.7778 -2.7024 40 1 6.2126 1.3966 -1.0719 41 1 4.3165 3.6657 -1.8901 42 1 5.8022 3.7677 -0.8961 43 1 3.5364 4.4854 3.2101 44 1 3.7628 2.9000 2.4301 45 1 2.3141 2.7953 4.4927 46 1 1.4840 2.2322 3.0217 47 1 -0.4607 2.5374 2.1063 48 1 -0.7982 3.7411 0.7902 49 1 -3.8042 6.4807 4.7041 50 1 -1.1439 6.0818 1.8558 51 1 -0.9648 5.9431 3.6574 52 1 0.8710 5.2955 0.5584 53 1 1.6899 6.1119 1.9161 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053320342.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:39 Heat of formation + Delta-G solvation = -47.678310 kcal Electronic energy + Delta-G solvation = -32215.856034 eV Core-core repulsion = 28281.282340 eV Total energy + Delta-G solvation = -3934.573694 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.12159 -40.78922 -38.49957 -37.82393 -35.77232 -35.32220 -34.32604 -31.82655 -30.74858 -30.22704 -29.32678 -27.60765 -26.73753 -25.99596 -24.64007 -23.89353 -22.61172 -21.99094 -21.32266 -20.44262 -19.39321 -18.83809 -18.21796 -17.53184 -17.06869 -16.95994 -16.68435 -16.32188 -15.97554 -15.75305 -15.63773 -15.49436 -15.09449 -15.00739 -14.59898 -14.53730 -14.12382 -14.10530 -13.86139 -13.43467 -13.34917 -13.12782 -12.91692 -12.86488 -12.78560 -12.59360 -12.52388 -12.21649 -12.10119 -11.97528 -11.90782 -11.75742 -11.72957 -11.63996 -11.48720 -11.34421 -11.30262 -11.24462 -11.00625 -10.72688 -10.59371 -9.52710 -8.97673 -7.93510 -5.27944 1.42923 1.46173 1.54376 1.63334 1.87478 2.43630 2.65528 3.26385 3.32092 3.37099 3.49547 3.63869 3.66295 3.78595 3.88373 4.05152 4.09495 4.11330 4.26093 4.30106 4.32784 4.41424 4.46619 4.52324 4.57890 4.62677 4.63336 4.65589 4.66561 4.70029 4.73930 4.78550 4.86413 4.90383 4.95818 4.99802 5.03536 5.09726 5.10483 5.16055 5.20185 5.25671 5.27840 5.31435 5.36104 5.41603 5.45994 5.49109 5.58009 5.85793 6.36306 6.42281 6.85318 7.17695 7.54546 8.52971 9.24072 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017263 B = 0.003540 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.558250 B = 7907.941264 C = 8700.903067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.124 4.124 4 C -0.071 4.071 5 H 0.109 0.891 6 C -0.116 4.116 7 C -0.115 4.115 8 C -0.115 4.115 9 C -0.108 4.108 10 H 0.123 0.877 11 C 0.526 3.474 12 O -0.583 6.583 13 N -0.612 5.612 14 C 0.074 3.926 15 C 0.037 3.963 16 O -0.363 6.363 17 C 0.082 3.918 18 C 0.112 3.888 19 N -0.629 5.629 20 C -0.233 4.233 21 H 0.082 0.918 22 C -0.063 4.063 23 N -0.950 5.950 24 Si 0.983 3.017 25 H -0.282 1.282 26 H -0.291 1.291 27 H -0.270 1.270 28 C 0.167 3.833 29 C 0.112 3.888 30 H 0.065 0.935 31 H 0.034 0.966 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.037 0.963 37 H 0.049 0.951 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.053 0.947 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.048 0.952 47 H 0.044 0.956 48 H 0.034 0.966 49 H 0.250 0.750 50 H 0.036 0.964 51 H 0.049 0.951 52 H 0.082 0.918 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.920 -11.577 -6.954 26.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.148 4.148 3 C -0.162 4.162 4 C -0.090 4.090 5 H 0.127 0.873 6 C -0.154 4.154 7 C -0.152 4.152 8 C -0.153 4.153 9 C -0.129 4.129 10 H 0.141 0.859 11 C 0.317 3.683 12 O -0.463 6.463 13 N -0.345 5.345 14 C -0.047 4.047 15 C -0.040 4.040 16 O -0.281 6.281 17 C 0.040 3.960 18 C -0.014 4.014 19 N -0.354 5.354 20 C -0.360 4.360 21 H 0.099 0.901 22 C -0.257 4.257 23 N -0.599 5.599 24 Si 0.810 3.190 25 H -0.209 1.209 26 H -0.218 1.218 27 H -0.194 1.194 28 C 0.041 3.959 29 C -0.012 4.012 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.109 0.891 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.111 0.889 44 H 0.149 0.851 45 H 0.149 0.851 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.052 0.948 49 H 0.059 0.941 50 H 0.054 0.946 51 H 0.067 0.933 52 H 0.101 0.899 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 22.287 -11.265 -7.122 25.968 hybrid contribution -1.769 0.428 0.054 1.821 sum 20.518 -10.837 -7.069 24.257 Atomic orbital electron populations 1.21789 0.97314 1.01632 1.00547 1.21455 0.94510 0.95902 1.02965 1.21899 0.95881 0.97588 1.00799 1.21779 0.93881 0.93013 1.00334 0.87299 1.22442 0.97111 1.00317 0.95519 1.22464 0.97897 0.93336 1.01531 1.22373 0.98792 0.98849 0.95309 1.22238 0.94216 0.94011 1.02468 0.85866 1.21151 0.84644 0.80779 0.81752 1.90656 1.62038 1.57514 1.36049 1.48336 1.33636 1.45595 1.06973 1.22677 0.96448 1.01364 0.84248 1.23272 0.87990 0.90370 1.02375 1.87966 1.54191 1.58173 1.27761 1.22749 0.91084 0.96344 0.85839 1.22859 0.87725 0.96959 0.93845 1.45725 1.20463 1.11288 1.57959 1.19253 0.94173 0.97077 1.25536 0.90053 1.25660 1.02571 0.96030 1.01402 1.70006 1.39505 1.06230 1.44111 0.85025 0.78665 0.76928 0.78353 1.20907 1.21757 1.19445 1.22006 0.84695 0.89993 0.99220 1.21792 0.87122 0.92850 0.99471 0.91597 0.94717 0.94200 0.90790 0.90549 0.93094 0.94426 0.93233 0.89418 0.91206 0.89124 0.92848 0.90039 0.88894 0.85072 0.85079 0.93372 0.93780 0.94826 0.94085 0.94646 0.93288 0.89918 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 9.91 71.98 0.71 -3.05 16 2 C -0.11 -2.13 5.79 30.59 0.18 -1.95 16 3 C -0.12 -2.77 3.40 30.60 0.10 -2.66 16 4 C -0.07 -1.09 2.92 -10.07 -0.03 -1.12 16 5 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 6 C -0.12 -1.60 5.54 31.67 0.18 -1.43 16 7 C -0.11 -1.37 6.91 31.88 0.22 -1.15 16 8 C -0.12 -1.93 6.31 31.67 0.20 -1.73 16 9 C -0.11 -1.84 2.47 -10.81 -0.03 -1.86 16 10 H 0.12 1.30 6.23 -2.39 -0.01 1.29 16 11 C 0.53 13.93 4.59 87.66 0.40 14.33 16 12 O -0.58 -20.68 14.57 -3.03 -0.04 -20.73 16 13 N -0.61 -15.99 2.44 -818.02 -1.99 -17.98 16 14 C 0.07 1.38 6.17 86.33 0.53 1.91 16 15 C 0.04 0.90 6.90 72.06 0.50 1.40 16 16 O -0.36 -13.84 10.55 -148.98 -1.57 -15.41 16 17 C 0.08 3.28 1.29 -10.83 -0.01 3.26 16 18 C 0.11 4.99 7.90 83.31 0.66 5.65 16 19 N -0.63 -34.60 3.78 -738.77 -2.79 -37.39 16 20 C -0.23 -13.78 10.74 84.03 0.90 -12.87 16 21 H 0.08 4.63 7.83 -2.91 -0.02 4.61 16 22 C -0.06 -3.75 5.50 84.86 0.47 -3.28 16 23 N -0.95 -59.24 11.51 21.65 0.25 -58.99 16 24 Si 0.98 47.15 29.55 68.60 2.03 49.18 16 25 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 26 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 27 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 28 C 0.17 8.49 6.83 83.41 0.57 9.06 16 29 C 0.11 3.73 5.83 86.14 0.50 4.23 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.03 0.98 8.00 -2.39 -0.02 0.96 16 32 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 1.22 7.52 -2.39 -0.02 1.21 16 34 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.05 1.32 5.65 -2.39 -0.01 1.31 16 36 H 0.04 1.09 7.17 -2.39 -0.02 1.08 16 37 H 0.05 0.90 7.75 -2.39 -0.02 0.88 16 38 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.05 1.26 6.87 -2.39 -0.02 1.25 16 42 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 43 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.13 1.40 5.61 -2.39 -0.01 1.38 16 45 H 0.13 2.44 8.14 -2.38 -0.02 2.42 16 46 H 0.05 1.26 6.39 -2.39 -0.02 1.24 16 47 H 0.04 1.90 7.22 -2.39 -0.02 1.89 16 48 H 0.03 1.54 7.93 -2.39 -0.02 1.52 16 49 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 50 H 0.04 1.81 8.09 -2.39 -0.02 1.79 16 51 H 0.05 2.80 7.14 -2.39 -0.02 2.78 16 52 H 0.08 3.07 6.90 -2.38 -0.02 3.05 16 53 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -77.62 396.88 2.80 -74.82 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.88 Total: 17.76 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 6.05 Total: 8.74 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -4.54 Total: -114.36 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -1.62 Total: -36.14 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -77.62 2.80 -74.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053320342.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.141 kcal (2) G-P(sol) polarization free energy of solvation -77.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds