Wall clock time and date at job start Tue Mar 31 2020 19:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47195 * 2 1 4 4 C 1.53001 * 109.46951 * 119.99711 * 2 1 3 5 5 C 1.53002 * 109.46979 * 65.00095 * 4 2 1 6 6 H 1.09007 * 115.55889 * 29.31331 * 5 4 2 7 7 C 1.52996 * 117.50138 * 243.62296 * 5 4 2 8 8 C 1.53002 * 117.49919 * 174.99472 * 5 4 2 9 9 H 1.08998 * 117.51677 * 0.02562 * 8 5 4 10 10 C 1.50700 * 117.50072 * 214.97997 * 8 5 4 11 11 O 1.21283 * 119.99803 * 359.97438 * 10 8 5 12 12 N 1.34777 * 119.99675 * 180.26760 * 10 8 5 13 13 C 1.46497 * 119.99525 * 179.72583 * 12 10 8 14 14 C 1.52999 * 109.46992 * 179.97438 * 13 12 10 15 15 H 1.09005 * 110.53070 * 305.69735 * 14 13 12 16 16 C 1.55055 * 110.59352 * 182.88970 * 14 13 12 17 17 C 1.55166 * 102.04482 * 204.97295 * 16 14 13 18 18 C 1.53434 * 103.91157 * 20.65211 * 17 16 14 19 19 C 1.53216 * 115.02268 * 132.43003 * 18 17 16 20 20 N 1.47718 * 85.89631 * 93.04566 * 19 18 17 21 21 C 1.36938 * 134.43128 * 204.07153 * 20 19 18 22 22 H 1.08001 * 120.00399 * 180.02562 * 21 20 19 23 23 C 1.38816 * 120.00103 * 0.06259 * 21 20 19 24 24 N 1.31628 * 119.99648 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00389 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46889 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47404 * 119.99664 * 25 23 21 28 28 H 1.48497 * 109.47113 * 239.99803 * 25 23 21 29 29 C 1.47714 * 91.13828 * 24.11518 * 20 19 18 30 30 O 1.42974 * 108.16459 * 1.82500 * 18 17 16 31 31 H 1.08998 * 109.47034 * 300.00382 * 1 2 3 32 32 H 1.08997 * 109.46992 * 60.00279 * 1 2 3 33 33 H 1.08996 * 109.46978 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47494 * 239.99805 * 2 1 3 35 35 H 1.08999 * 109.47037 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.46923 * 299.99763 * 3 2 1 37 37 H 1.08999 * 109.46699 * 59.99905 * 3 2 1 38 38 H 1.09000 * 109.47498 * 305.00303 * 4 2 1 39 39 H 1.09002 * 109.47008 * 184.99618 * 4 2 1 40 40 H 1.08992 * 117.50251 * 145.02429 * 7 5 4 41 41 H 1.09000 * 117.51782 * 359.97438 * 7 5 4 42 42 H 0.97000 * 119.99894 * 359.71837 * 12 10 8 43 43 H 1.08995 * 109.47421 * 299.99467 * 13 12 10 44 44 H 1.09001 * 109.47621 * 60.00103 * 13 12 10 45 45 H 1.08996 * 110.87285 * 323.02025 * 16 14 13 46 46 H 1.09007 * 110.87150 * 86.70316 * 16 14 13 47 47 H 1.09002 * 110.41166 * 262.09615 * 17 16 14 48 48 H 1.09001 * 110.75180 * 139.37920 * 17 16 14 49 49 H 1.09000 * 113.80075 * 207.28630 * 19 18 17 50 50 H 1.08999 * 113.80962 * 338.79901 * 19 18 17 51 51 H 0.97001 * 119.99600 * 180.02562 * 24 23 21 52 52 H 1.09000 * 113.80470 * 221.64422 * 29 20 19 53 53 H 1.08994 * 113.91163 * 90.14277 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1880 6 1 1.5388 -2.6155 0.1868 7 6 0.6789 -2.7109 2.2654 8 6 2.1539 -3.1170 2.2938 9 1 2.7831 -2.6732 3.0652 10 6 2.4923 -4.5359 1.9154 11 8 2.3493 -4.9086 0.7701 12 7 2.9481 -5.3924 2.8509 13 6 3.2714 -6.7734 2.4842 14 6 3.7641 -7.5274 3.7210 15 1 4.5941 -6.9963 4.1870 16 6 4.1827 -8.9729 3.3476 17 6 4.0068 -9.7195 4.6964 18 6 3.0491 -8.8230 5.4922 19 6 1.8804 -9.5549 6.1599 20 7 2.7507 -9.6372 7.3506 21 6 2.8148 -10.4704 8.4355 22 1 3.5686 -10.3138 9.1929 23 6 1.9113 -11.5167 8.5614 24 7 0.9927 -11.7077 7.6382 25 14 1.9981 -12.6528 10.0416 26 1 3.1114 -12.2273 10.9275 27 1 0.7173 -12.5893 10.7903 28 1 2.2352 -14.0454 9.5836 29 6 3.5237 -8.4606 6.9034 30 8 2.6858 -7.7145 4.6655 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6768 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 1.6053 -0.2617 2.1370 39 1 3.1263 -0.6443 1.2952 40 1 -0.0465 -3.4700 1.9731 41 1 0.3383 -2.0001 3.0183 42 1 3.0622 -5.0943 3.7669 43 1 2.3805 -7.2629 2.0909 44 1 4.0522 -6.7742 1.7237 45 1 3.5193 -9.3852 2.5874 46 1 5.2208 -9.0034 3.0166 47 1 4.9643 -9.8074 5.2100 48 1 3.5668 -10.7041 4.5383 49 1 0.9964 -8.9335 6.3032 50 1 1.6542 -10.5228 5.7125 51 1 0.3611 -12.4386 7.7264 52 1 4.5997 -8.5612 7.0451 53 1 3.1331 -7.5107 7.2684 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053665711.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:55 Heat of formation + Delta-G solvation = -43.377916 kcal Electronic energy + Delta-G solvation = -28861.952713 eV Core-core repulsion = 24927.565498 eV Total energy + Delta-G solvation = -3934.387215 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.44944 -40.92923 -38.69761 -38.00387 -35.87715 -35.60550 -34.09788 -33.06052 -30.80066 -29.01003 -28.28275 -27.93957 -26.79113 -25.86037 -24.30373 -23.31048 -22.35181 -22.07513 -20.88847 -20.87997 -20.39357 -18.78027 -18.30103 -17.76906 -17.04224 -16.99475 -16.28340 -16.20039 -15.99718 -15.76800 -15.56766 -15.35582 -15.04467 -14.78004 -14.57218 -14.24381 -14.04224 -13.95211 -13.55182 -13.41798 -13.32958 -12.99727 -12.97796 -12.85472 -12.80893 -12.61365 -12.39266 -12.35495 -12.24448 -12.12130 -12.05848 -11.84130 -11.77823 -11.62756 -11.47894 -11.47427 -11.11934 -10.98123 -10.89686 -10.72750 -10.38317 -10.11826 -8.98338 -7.93695 -5.28309 1.45362 1.46637 1.48597 1.57065 2.11391 2.42332 2.77994 2.89379 3.25515 3.43001 3.56549 3.60781 3.70749 3.75977 3.78873 3.87930 4.01084 4.09882 4.12546 4.15868 4.22361 4.31480 4.45221 4.50381 4.57672 4.60877 4.73022 4.78074 4.81728 4.85540 4.87806 4.89915 4.90985 4.92161 4.99159 5.02831 5.04156 5.10346 5.11811 5.14172 5.19778 5.22228 5.33789 5.37401 5.40398 5.43853 5.47821 5.50157 5.57653 5.86336 6.14476 6.53448 6.87325 7.22310 7.56604 8.50999 9.24081 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.023585 B = 0.001789 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.889402 B =15650.197580 C =16208.330669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.079 4.079 5 C -0.111 4.111 6 H 0.093 0.907 7 C -0.142 4.142 8 C -0.194 4.194 9 H 0.149 0.851 10 C 0.536 3.464 11 O -0.589 6.589 12 N -0.713 5.713 13 C 0.132 3.868 14 C 0.065 3.935 15 H 0.098 0.902 16 C -0.135 4.135 17 C -0.112 4.112 18 C 0.078 3.922 19 C 0.168 3.832 20 N -0.630 5.630 21 C -0.232 4.232 22 H 0.089 0.911 23 C -0.067 4.067 24 N -0.955 5.955 25 Si 0.982 3.018 26 H -0.262 1.262 27 H -0.294 1.294 28 H -0.290 1.290 29 C 0.110 3.890 30 O -0.374 6.374 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.127 0.873 42 H 0.415 0.585 43 H 0.054 0.946 44 H 0.094 0.906 45 H 0.078 0.922 46 H 0.114 0.886 47 H 0.085 0.915 48 H 0.061 0.939 49 H 0.007 0.993 50 H 0.048 0.952 51 H 0.249 0.751 52 H 0.067 0.933 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.622 23.275 -14.112 28.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.116 4.116 5 C -0.130 4.130 6 H 0.111 0.889 7 C -0.180 4.180 8 C -0.215 4.215 9 H 0.167 0.833 10 C 0.325 3.675 11 O -0.470 6.470 12 N -0.364 5.364 13 C 0.009 3.991 14 C 0.007 3.993 15 H 0.116 0.884 16 C -0.173 4.173 17 C -0.150 4.150 18 C 0.037 3.963 19 C 0.043 3.957 20 N -0.358 5.358 21 C -0.360 4.360 22 H 0.107 0.893 23 C -0.260 4.260 24 N -0.604 5.604 25 Si 0.810 3.190 26 H -0.186 1.186 27 H -0.222 1.222 28 H -0.217 1.217 29 C -0.015 4.015 30 O -0.292 6.292 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.145 0.855 42 H 0.251 0.749 43 H 0.073 0.927 44 H 0.112 0.888 45 H 0.097 0.903 46 H 0.132 0.868 47 H 0.103 0.897 48 H 0.080 0.920 49 H 0.025 0.975 50 H 0.066 0.934 51 H 0.058 0.942 52 H 0.085 0.915 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.273 22.875 -14.699 27.905 hybrid contribution -0.507 -1.176 1.317 1.837 sum 5.766 21.699 -13.383 26.138 Atomic orbital electron populations 1.21843 0.95092 1.01563 1.01883 1.21107 0.96125 0.96466 0.97744 1.21824 1.01080 0.95271 1.02127 1.21278 1.01162 0.90370 0.98804 1.22380 1.01464 0.94909 0.94250 0.88864 1.23165 0.89695 1.03013 1.02109 1.22379 1.01199 0.91989 1.05933 0.83299 1.20227 0.75501 0.87403 0.84405 1.90665 1.55211 1.79465 1.21636 1.45857 1.66394 1.11049 1.13083 1.21371 1.00969 0.81024 0.95774 1.23532 0.90103 0.96568 0.89068 0.88431 1.23165 1.04236 0.93202 0.96666 1.22420 0.98981 0.98320 0.95303 1.23736 0.96223 0.86642 0.89673 1.22178 0.91742 0.96163 0.85666 1.45989 1.35803 1.30242 1.23777 1.19453 1.12718 1.05212 0.98655 0.89292 1.25687 0.97711 1.01008 1.01630 1.70037 1.20968 1.33112 1.36301 0.84956 0.77376 0.78144 0.78518 1.18588 1.22167 1.21730 1.23124 0.96608 0.90226 0.91542 1.88801 1.42846 1.50159 1.47436 0.92136 0.92809 0.93268 0.92109 0.92476 0.92548 0.92140 0.90213 0.90935 0.89962 0.85483 0.74871 0.92721 0.88760 0.90336 0.86807 0.89670 0.92030 0.97498 0.93398 0.94204 0.91480 0.93889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.01 71.98 0.65 -1.05 16 2 C -0.10 -1.11 2.88 -10.79 -0.03 -1.14 16 3 C -0.15 -1.35 9.19 71.98 0.66 -0.69 16 4 C -0.08 -0.90 4.96 30.60 0.15 -0.75 16 5 C -0.11 -1.80 4.24 -10.79 -0.05 -1.85 16 6 H 0.09 1.99 7.60 -2.38 -0.02 1.97 16 7 C -0.14 -2.23 9.88 30.60 0.30 -1.93 16 8 C -0.19 -3.28 5.91 -11.54 -0.07 -3.35 16 9 H 0.15 1.69 8.14 -2.39 -0.02 1.68 16 10 C 0.54 12.96 7.61 87.66 0.67 13.63 16 11 O -0.59 -18.98 16.26 -3.04 -0.05 -19.03 16 12 N -0.71 -15.31 5.55 -463.07 -2.57 -17.88 16 13 C 0.13 3.02 5.41 86.38 0.47 3.48 16 14 C 0.06 1.50 3.37 31.30 0.11 1.61 16 15 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 16 C -0.13 -3.05 6.62 32.04 0.21 -2.84 16 17 C -0.11 -3.55 6.47 31.48 0.20 -3.35 16 18 C 0.08 2.95 1.56 -10.46 -0.02 2.93 16 19 C 0.17 8.45 7.00 86.21 0.60 9.05 16 20 N -0.63 -32.66 3.68 -733.92 -2.70 -35.36 16 21 C -0.23 -13.03 10.70 84.03 0.90 -12.13 16 22 H 0.09 4.71 7.83 -2.91 -0.02 4.69 16 23 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 24 N -0.96 -58.46 11.39 21.65 0.25 -58.21 16 25 Si 0.98 45.65 29.55 68.60 2.03 47.68 16 26 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 27 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 28 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 29 C 0.11 4.43 8.43 86.22 0.73 5.15 16 30 O -0.37 -12.40 10.99 -148.98 -1.64 -14.03 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.67 7.38 -2.39 -0.02 0.65 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.08 0.73 7.88 -2.39 -0.02 0.71 16 39 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.13 1.40 8.03 -2.39 -0.02 1.38 16 42 H 0.41 7.34 8.47 -92.71 -0.79 6.56 16 43 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 44 H 0.09 1.89 8.14 -2.39 -0.02 1.88 16 45 H 0.08 1.80 8.05 -2.39 -0.02 1.79 16 46 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 47 H 0.08 2.51 7.74 -2.39 -0.02 2.49 16 48 H 0.06 2.22 7.75 -2.39 -0.02 2.21 16 49 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 50 H 0.05 2.66 6.90 -2.39 -0.02 2.64 16 51 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 52 H 0.07 2.39 7.85 -2.39 -0.02 2.37 16 53 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -73.26 423.41 1.36 -71.91 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 0.08 Total: 21.53 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 5.96 Total: 3.41 kcal Atomic # 7 Polarization: -106.43 SS G_CDS: -5.03 Total: -111.46 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -1.69 Total: -33.07 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -73.26 1.36 -71.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053665711.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.528 kcal (2) G-P(sol) polarization free energy of solvation -73.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds