Wall clock time and date at job start Tue Mar 31 2020 19:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47057 * 2 1 4 4 C 1.53001 * 109.47140 * 119.99698 * 2 1 3 5 5 C 1.53002 * 109.47365 * 175.00161 * 4 2 1 6 6 H 1.09000 * 115.55766 * 29.29474 * 5 4 2 7 7 C 1.53002 * 117.49773 * 243.61158 * 5 4 2 8 8 C 1.53000 * 60.02940 * 252.51785 * 7 5 4 9 9 H 1.09008 * 117.49673 * 107.47884 * 8 7 5 10 10 C 1.50690 * 117.50063 * 252.49714 * 8 7 5 11 11 O 1.21283 * 120.00042 * 68.61154 * 10 8 7 12 12 N 1.34777 * 120.00347 * 248.60878 * 10 8 7 13 13 C 1.46501 * 120.00401 * 179.97438 * 12 10 8 14 14 C 1.52995 * 109.47437 * 180.02562 * 13 12 10 15 15 H 1.09004 * 110.26969 * 60.61580 * 14 13 12 16 16 C 1.55002 * 110.30410 * 182.79789 * 14 13 12 17 17 C 1.55456 * 101.03112 * 155.01048 * 16 14 13 18 18 C 1.53773 * 102.01483 * 326.40497 * 17 16 14 19 19 C 1.53265 * 114.73066 * 151.73839 * 18 17 16 20 20 N 1.47713 * 85.91537 * 92.61985 * 19 18 17 21 21 C 1.36936 * 134.43981 * 204.20291 * 20 19 18 22 22 H 1.07996 * 119.99459 * 179.97438 * 21 20 19 23 23 C 1.38810 * 119.99930 * 359.93451 * 21 20 19 24 24 N 1.31617 * 119.99818 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99838 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47029 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46968 * 120.00454 * 25 23 21 28 28 H 1.48495 * 109.47209 * 240.00409 * 25 23 21 29 29 C 1.47709 * 91.12298 * 24.15628 * 20 19 18 30 30 O 1.42534 * 108.37624 * 20.95664 * 18 17 16 31 31 H 1.09002 * 109.47363 * 299.99831 * 1 2 3 32 32 H 1.08997 * 109.47688 * 60.00513 * 1 2 3 33 33 H 1.09006 * 109.47017 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47091 * 239.99293 * 2 1 3 35 35 H 1.08999 * 109.47519 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.47047 * 299.99787 * 3 2 1 37 37 H 1.09005 * 109.47503 * 59.99451 * 3 2 1 38 38 H 1.09007 * 109.47338 * 55.00337 * 4 2 1 39 39 H 1.08996 * 109.47269 * 295.00408 * 4 2 1 40 40 H 1.09002 * 117.49918 * 145.01819 * 7 5 4 41 41 H 1.09002 * 117.49754 * 0.02562 * 7 5 4 42 42 H 0.97000 * 120.00030 * 0.02562 * 12 10 8 43 43 H 1.09006 * 109.47359 * 300.00196 * 13 12 10 44 44 H 1.08997 * 109.47077 * 60.00008 * 13 12 10 45 45 H 1.09003 * 111.10849 * 272.94839 * 16 14 13 46 46 H 1.08996 * 111.11455 * 37.06523 * 16 14 13 47 47 H 1.08999 * 110.92190 * 208.23503 * 17 16 14 48 48 H 1.09000 * 110.92759 * 84.58205 * 17 16 14 49 49 H 1.08996 * 113.80281 * 206.87151 * 19 18 17 50 50 H 1.09003 * 113.80045 * 338.37090 * 19 18 17 51 51 H 0.97009 * 119.99790 * 180.02562 * 24 23 21 52 52 H 1.08997 * 113.80508 * 221.59645 * 29 20 19 53 53 H 1.08999 * 113.90921 * 90.10305 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1881 6 1 4.0720 -0.0356 0.6420 7 6 4.1697 -2.2345 1.1158 8 6 4.2804 -1.4200 2.4063 9 1 3.6646 -1.7291 3.2509 10 6 5.6325 -0.8562 2.7594 11 8 6.1139 0.0312 2.0872 12 7 6.3069 -1.3378 3.8222 13 6 7.6217 -0.7901 4.1652 14 6 8.1657 -1.5065 5.4027 15 1 8.2749 -2.5728 5.2043 16 6 9.5255 -0.8937 5.8246 17 6 9.5545 -1.2478 7.3381 18 6 8.0664 -1.1610 7.7157 19 6 7.6471 -2.0631 8.8817 20 7 7.9164 -0.8946 9.7442 21 6 8.2381 -0.7318 11.0652 22 1 8.3886 0.2596 11.4661 23 6 8.3699 -1.8411 11.8892 24 7 8.1862 -3.0493 11.4006 25 14 8.8095 -1.6191 13.6911 26 1 8.9621 -0.1723 13.9888 27 1 7.7297 -2.1871 14.5376 28 1 10.0857 -2.3215 13.9795 29 6 7.7008 0.0281 8.6111 30 8 7.2925 -1.2947 6.5262 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 3.1299 1.4425 0.0005 36 1 1.6766 1.9562 -0.8900 37 1 1.6765 1.9564 0.8899 38 1 1.6054 -1.7198 1.2953 39 1 1.7516 -0.1583 2.1370 40 1 5.0749 -2.3625 0.5222 41 1 3.4813 -3.0796 1.1115 42 1 5.9221 -2.0477 4.3597 43 1 8.3062 -0.9381 3.3299 44 1 7.5281 0.2757 4.3737 45 1 10.3513 -1.3683 5.2946 46 1 9.5335 0.1857 5.6738 47 1 10.1409 -0.5187 7.8972 48 1 9.9377 -2.2561 7.4948 49 1 6.5981 -2.3576 8.8548 50 1 8.3219 -2.9017 9.0538 51 1 8.2779 -3.8246 11.9765 52 1 8.4180 0.8477 8.5685 53 1 6.6683 0.3599 8.5018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053665713.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:00 Heat of formation + Delta-G solvation = -42.744251 kcal Electronic energy + Delta-G solvation = -28962.357883 eV Core-core repulsion = 25027.998146 eV Total energy + Delta-G solvation = -3934.359737 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.44772 -40.91199 -38.69154 -38.02931 -35.91415 -35.58534 -34.10809 -33.09576 -30.79379 -29.00229 -28.27107 -27.98819 -26.76149 -25.84636 -24.28794 -23.31944 -22.38186 -22.22474 -20.87978 -20.69331 -20.35718 -18.80350 -18.33553 -17.81078 -17.05917 -17.04304 -16.39099 -16.30294 -15.97111 -15.68444 -15.55461 -15.31067 -15.01181 -14.64827 -14.55436 -14.24747 -14.02458 -13.86045 -13.58585 -13.40120 -13.37204 -13.08093 -12.98523 -12.93493 -12.85179 -12.63493 -12.50948 -12.48085 -12.25581 -12.04981 -11.96868 -11.82935 -11.66988 -11.66821 -11.52942 -11.46105 -11.15249 -10.98190 -10.88649 -10.73222 -10.27117 -10.09749 -8.98147 -7.93830 -5.28202 1.45189 1.46310 1.49286 1.56737 2.13015 2.41957 2.76049 2.88934 3.24968 3.42175 3.58877 3.61593 3.69767 3.76453 3.78330 3.88530 3.90852 4.09814 4.14457 4.15781 4.22573 4.33545 4.42479 4.49573 4.55546 4.60878 4.72114 4.79088 4.81127 4.84452 4.86198 4.90384 4.93637 4.95590 4.96608 4.98386 5.03632 5.09478 5.11664 5.16869 5.17086 5.22315 5.29341 5.34162 5.40432 5.42932 5.48363 5.53738 5.55872 5.86837 6.24204 6.54263 6.88278 7.22781 7.56032 8.51197 9.23660 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018367 B = 0.001901 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.083082 B =14726.017154 C =15489.813339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.081 4.081 5 C -0.121 4.121 6 H 0.099 0.901 7 C -0.132 4.132 8 C -0.200 4.200 9 H 0.139 0.861 10 C 0.538 3.462 11 O -0.588 6.588 12 N -0.713 5.713 13 C 0.129 3.871 14 C 0.066 3.934 15 H 0.091 0.909 16 C -0.133 4.133 17 C -0.112 4.112 18 C 0.083 3.917 19 C 0.160 3.840 20 N -0.630 5.630 21 C -0.234 4.234 22 H 0.086 0.914 23 C -0.065 4.065 24 N -0.952 5.952 25 Si 0.982 3.018 26 H -0.265 1.265 27 H -0.293 1.293 28 H -0.288 1.288 29 C 0.115 3.885 30 O -0.375 6.375 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.046 0.954 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.129 0.871 42 H 0.414 0.586 43 H 0.091 0.909 44 H 0.059 0.941 45 H 0.113 0.887 46 H 0.087 0.913 47 H 0.078 0.922 48 H 0.074 0.926 49 H 0.009 0.991 50 H 0.051 0.949 51 H 0.250 0.750 52 H 0.062 0.938 53 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.176 1.511 -24.768 26.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.209 4.209 4 C -0.119 4.119 5 C -0.139 4.139 6 H 0.117 0.883 7 C -0.169 4.169 8 C -0.221 4.221 9 H 0.157 0.843 10 C 0.326 3.674 11 O -0.469 6.469 12 N -0.364 5.364 13 C 0.006 3.994 14 C 0.008 3.992 15 H 0.109 0.891 16 C -0.171 4.171 17 C -0.150 4.150 18 C 0.042 3.958 19 C 0.035 3.965 20 N -0.358 5.358 21 C -0.362 4.362 22 H 0.103 0.897 23 C -0.258 4.258 24 N -0.601 5.601 25 Si 0.810 3.190 26 H -0.189 1.189 27 H -0.221 1.221 28 H -0.215 1.215 29 C -0.010 4.010 30 O -0.294 6.294 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.111 0.889 41 H 0.147 0.853 42 H 0.250 0.750 43 H 0.109 0.891 44 H 0.077 0.923 45 H 0.131 0.869 46 H 0.106 0.894 47 H 0.096 0.904 48 H 0.093 0.907 49 H 0.027 0.973 50 H 0.069 0.931 51 H 0.059 0.941 52 H 0.080 0.920 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -7.968 2.076 -24.931 26.256 hybrid contribution 0.109 -0.299 1.854 1.881 sum -7.858 1.778 -23.077 24.443 Atomic orbital electron populations 1.21829 0.94409 1.02200 1.01905 1.21058 0.96094 0.95820 0.98110 1.21913 1.00706 0.96541 1.01709 1.21282 0.90737 1.01585 0.98265 1.22502 0.95936 0.97507 0.98001 0.88274 1.23193 1.03361 0.95162 0.95212 1.22352 0.95183 1.08770 0.95818 0.84290 1.20173 0.86413 0.81329 0.79518 1.90656 1.70729 1.32411 1.53091 1.45862 1.19994 1.40449 1.30075 1.21504 0.84459 0.97836 0.95639 1.23394 0.89978 0.99969 0.85824 0.89138 1.23256 0.97074 1.02628 0.94147 1.22578 0.93082 1.02884 0.96452 1.23741 0.92098 0.96154 0.83787 1.22406 0.96493 0.91923 0.85728 1.45975 1.80479 1.03777 1.05579 1.19415 1.39271 0.93432 0.84069 0.89672 1.25655 1.02660 0.94951 1.02569 1.70018 1.56622 0.97583 1.35880 0.84967 0.76940 0.77890 0.79252 1.18923 1.22054 1.21517 1.22931 0.98394 0.94030 0.85665 1.88326 1.32922 1.92617 1.15499 0.92904 0.92327 0.91957 0.90819 0.93482 0.92237 0.93141 0.90021 0.91852 0.88949 0.85340 0.75015 0.89061 0.92308 0.86876 0.89426 0.90381 0.90716 0.97303 0.93119 0.94112 0.91960 0.94565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.19 71.98 0.66 -0.83 16 2 C -0.09 -1.13 2.92 -10.80 -0.03 -1.16 16 3 C -0.15 -2.18 9.01 71.98 0.65 -1.53 16 4 C -0.08 -1.05 4.96 30.60 0.15 -0.90 16 5 C -0.12 -2.01 5.04 -10.77 -0.05 -2.06 16 6 H 0.10 2.10 5.91 -2.39 -0.01 2.09 16 7 C -0.13 -1.82 9.88 30.60 0.30 -1.51 16 8 C -0.20 -3.56 5.91 -11.52 -0.07 -3.63 16 9 H 0.14 2.03 8.14 -2.38 -0.02 2.01 16 10 C 0.54 13.23 7.61 87.65 0.67 13.90 16 11 O -0.59 -18.81 16.26 -3.04 -0.05 -18.86 16 12 N -0.71 -15.93 5.48 -463.07 -2.54 -18.47 16 13 C 0.13 2.93 5.40 86.38 0.47 3.39 16 14 C 0.07 1.56 3.52 31.28 0.11 1.67 16 15 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 16 C -0.13 -2.92 6.58 32.12 0.21 -2.71 16 17 C -0.11 -3.50 6.32 31.70 0.20 -3.30 16 18 C 0.08 3.14 1.68 -10.31 -0.02 3.12 16 19 C 0.16 7.88 7.01 86.23 0.60 8.48 16 20 N -0.63 -33.00 3.67 -732.78 -2.69 -35.69 16 21 C -0.23 -13.23 10.70 84.03 0.90 -12.33 16 22 H 0.09 4.61 7.83 -2.91 -0.02 4.58 16 23 C -0.07 -3.72 5.50 84.86 0.47 -3.26 16 24 N -0.95 -57.46 11.39 21.65 0.25 -57.21 16 25 Si 0.98 45.63 29.55 68.60 2.03 47.66 16 26 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 27 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 28 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 29 C 0.12 4.88 8.37 86.24 0.72 5.60 16 30 O -0.38 -12.32 10.67 -148.98 -1.59 -13.91 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.05 0.80 6.41 -2.39 -0.02 0.78 16 36 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.05 0.75 8.14 -2.38 -0.02 0.74 16 38 H 0.08 0.81 7.88 -2.38 -0.02 0.79 16 39 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.13 1.14 8.03 -2.39 -0.02 1.12 16 42 H 0.41 8.16 8.41 -92.71 -0.78 7.38 16 43 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 44 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.09 1.81 8.05 -2.39 -0.02 1.80 16 47 H 0.08 2.56 7.83 -2.39 -0.02 2.54 16 48 H 0.07 2.40 8.01 -2.39 -0.02 2.38 16 49 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 50 H 0.05 2.72 7.05 -2.39 -0.02 2.70 16 51 H 0.25 14.55 8.31 -92.70 -0.77 13.78 16 52 H 0.06 2.42 7.98 -2.39 -0.02 2.40 16 53 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -71.84 421.79 1.44 -70.39 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.10 Total: 23.15 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 5.94 Total: 2.95 kcal Atomic # 7 Polarization: -106.39 SS G_CDS: -4.98 Total: -111.37 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -1.64 Total: -32.78 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -71.84 1.44 -70.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053665713.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.646 kcal (2) G-P(sol) polarization free energy of solvation -71.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds