Wall clock time and date at job start Tue Mar 31 2020 20:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47353 * 2 1 4 4 C 1.53003 * 109.46977 * 119.99668 * 2 1 3 5 5 C 1.50696 * 109.47403 * 300.00072 * 4 2 1 6 6 O 1.21279 * 119.99991 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99907 * 180.02562 * 5 4 2 8 8 C 1.46983 * 120.72516 * 359.97438 * 7 5 4 9 9 C 1.53150 * 108.44342 * 234.53448 * 8 7 5 10 10 C 1.52512 * 109.79550 * 305.46870 * 9 8 7 11 11 H 1.09008 * 108.93184 * 179.65791 * 10 9 8 12 12 O 1.42689 * 110.62400 * 298.68955 * 10 9 8 13 13 C 1.43067 * 113.87674 * 185.34751 * 12 10 9 14 14 C 1.53228 * 109.44550 * 298.35056 * 13 12 10 15 15 N 1.47175 * 108.69357 * 51.59224 * 14 13 12 16 16 C 1.36939 * 121.21979 * 129.07013 * 15 14 13 17 17 H 1.08000 * 120.00045 * 223.10256 * 16 15 14 18 18 C 1.38811 * 120.00243 * 43.10559 * 16 15 14 19 19 N 1.31620 * 120.00089 * 213.67805 * 18 16 15 20 20 Si 1.86800 * 120.00038 * 33.68041 * 18 16 15 21 21 H 1.48492 * 109.47051 * 84.64438 * 20 18 16 22 22 H 1.48501 * 109.47209 * 204.64781 * 20 18 16 23 23 H 1.48501 * 109.46878 * 324.64676 * 20 18 16 24 24 C 1.47587 * 117.55462 * 309.05177 * 15 14 13 25 25 H 1.09005 * 111.16437 * 172.79018 * 24 15 14 26 26 C 1.46793 * 120.71982 * 179.97438 * 7 5 4 27 27 C 1.53000 * 109.47289 * 239.99967 * 2 1 3 28 28 C 1.52993 * 117.50000 * 128.75139 * 27 2 1 29 29 C 1.52995 * 117.50025 * 60.08850 * 27 2 1 30 30 H 1.09006 * 109.47076 * 300.00521 * 1 2 3 31 31 H 1.09000 * 109.46750 * 60.00006 * 1 2 3 32 32 H 1.08990 * 109.47336 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47113 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47188 * 299.99726 * 3 2 1 35 35 H 1.08994 * 109.47305 * 60.00107 * 3 2 1 36 36 H 1.09007 * 109.47019 * 179.97438 * 4 2 1 37 37 H 1.09005 * 109.47176 * 60.00268 * 4 2 1 38 38 H 1.08992 * 109.64199 * 114.84474 * 8 7 5 39 39 H 1.09001 * 109.81513 * 354.32113 * 8 7 5 40 40 H 1.09001 * 109.42306 * 185.36481 * 9 8 7 41 41 H 1.09006 * 109.36361 * 65.53045 * 9 8 7 42 42 H 1.09005 * 109.47384 * 178.36201 * 13 12 10 43 43 H 1.08996 * 109.48056 * 58.35147 * 13 12 10 44 44 H 1.08998 * 109.60561 * 291.83101 * 14 13 12 45 45 H 1.09000 * 109.73225 * 171.43556 * 14 13 12 46 46 H 0.97002 * 120.00386 * 180.02562 * 19 18 16 47 47 H 1.08997 * 109.52009 * 245.63285 * 26 7 5 48 48 H 1.09000 * 109.52109 * 5.81492 * 26 7 5 49 49 H 1.09003 * 115.54905 * 274.41644 * 27 2 1 50 50 H 1.08996 * 117.50320 * 359.97438 * 28 27 2 51 51 H 1.09006 * 117.50417 * 145.02467 * 28 27 2 52 52 H 1.09000 * 117.49757 * 214.98650 * 29 27 2 53 53 H 1.08997 * 117.49779 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5376 -0.0108 2.4797 6 8 0.8407 0.9755 2.3684 7 7 1.8636 -0.4710 3.7039 8 6 2.7076 -1.6645 3.8572 9 6 1.9692 -2.6691 4.7467 10 6 1.5789 -2.0044 6.0627 11 1 1.0497 -2.7290 6.6816 12 8 2.7397 -1.5709 6.7704 13 6 2.4618 -1.0453 8.0717 14 6 1.5625 0.1885 7.9422 15 7 0.4001 -0.1604 7.1097 16 6 -0.8770 0.1034 7.5276 17 1 -1.6527 -0.6359 7.3933 18 6 -1.1747 1.3211 8.1238 19 7 -2.0849 1.3844 9.0725 20 14 -0.2836 2.8701 7.5797 21 1 -0.9636 3.4399 6.3890 22 1 -0.3006 3.8643 8.6826 23 1 1.1220 2.5372 7.2350 24 6 0.6614 -0.8045 5.8078 25 1 -0.2660 -1.1309 5.3370 26 6 1.3835 0.2090 4.9130 27 6 2.0400 -0.7212 -1.2492 28 6 3.0763 0.0039 -2.1100 29 6 1.6375 -0.1484 -2.6096 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.1301 1.4425 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8899 36 1 3.1300 -0.7216 1.2491 37 1 1.6766 -1.7489 1.2494 38 1 3.6528 -1.3874 4.3240 39 1 2.8980 -2.1104 2.8810 40 1 2.6193 -3.5201 4.9494 41 1 1.0708 -3.0133 4.2343 42 1 3.3964 -0.7644 8.5573 43 1 1.9553 -1.8032 8.6693 44 1 2.1191 0.9990 7.4717 45 1 1.2241 0.5025 8.9296 46 1 -2.2932 2.2354 9.4889 47 1 2.2302 0.6330 5.4529 48 1 0.6932 1.0049 4.6335 49 1 2.1253 -1.8046 -1.1647 50 1 3.3946 0.9949 -1.7866 51 1 3.8432 -0.6024 -2.5922 52 1 1.4582 -0.8548 -3.4201 53 1 1.0090 0.7421 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074235090.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:45 Heat of formation + Delta-G solvation = -41.765092 kcal Electronic energy + Delta-G solvation = -31724.559395 eV Core-core repulsion = 27790.242117 eV Total energy + Delta-G solvation = -3934.317277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.73879 -40.61876 -39.11728 -37.14555 -36.49633 -34.49001 -33.88227 -33.16392 -31.40920 -29.81383 -28.74990 -28.26047 -26.04207 -25.52885 -24.64457 -24.04207 -22.99670 -22.89610 -20.98159 -19.71957 -19.16461 -19.00845 -18.23101 -17.25792 -17.07738 -16.87212 -16.79786 -16.64153 -16.19513 -15.81108 -15.71226 -15.40831 -14.97552 -14.73370 -14.54408 -14.51820 -14.32715 -14.03660 -13.93861 -13.76105 -13.36355 -13.28565 -13.00795 -12.77424 -12.72251 -12.59807 -12.46121 -12.32100 -12.18611 -12.07295 -12.01889 -11.83550 -11.82322 -11.62330 -11.52870 -11.19963 -11.04506 -10.90870 -10.69553 -10.46973 -10.33180 -9.62191 -8.65259 -8.39836 -5.70944 1.25482 1.36066 1.42947 1.72235 2.03142 2.33539 2.78732 2.90595 2.99452 3.24632 3.53913 3.73934 3.82032 3.99146 4.03250 4.04955 4.12086 4.18067 4.25134 4.27756 4.32287 4.34837 4.39211 4.41412 4.50049 4.62726 4.63468 4.67133 4.74614 4.80485 4.83716 4.85377 4.87722 4.89471 4.91835 4.99765 5.06107 5.08137 5.14567 5.14740 5.17524 5.20313 5.29904 5.36597 5.44724 5.50156 5.56047 5.67071 5.81082 6.10448 6.28375 6.57288 6.84984 7.32024 7.46712 8.00383 8.80171 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015397 B = 0.003546 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.099386 B = 7895.025538 C = 8979.953093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.012 4.012 3 C -0.152 4.152 4 C -0.118 4.118 5 C 0.503 3.497 6 O -0.577 6.577 7 N -0.609 5.609 8 C 0.110 3.890 9 C -0.117 4.117 10 C 0.086 3.914 11 H 0.046 0.954 12 O -0.378 6.378 13 C 0.057 3.943 14 C 0.102 3.898 15 N -0.605 5.605 16 C -0.272 4.272 17 H 0.039 0.961 18 C 0.014 3.986 19 N -0.919 5.919 20 Si 0.901 3.099 21 H -0.301 1.301 22 H -0.292 1.292 23 H -0.244 1.244 24 C 0.129 3.871 25 H 0.062 0.938 26 C 0.118 3.882 27 C -0.140 4.140 28 C -0.181 4.181 29 C -0.183 4.183 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.077 0.923 39 H 0.125 0.875 40 H 0.112 0.888 41 H 0.089 0.911 42 H 0.119 0.881 43 H 0.047 0.953 44 H 0.030 0.970 45 H 0.058 0.942 46 H 0.267 0.733 47 H 0.054 0.946 48 H 0.044 0.956 49 H 0.122 0.878 50 H 0.093 0.907 51 H 0.105 0.895 52 H 0.103 0.897 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.833 -10.383 -19.058 26.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.012 4.012 3 C -0.209 4.209 4 C -0.157 4.157 5 C 0.294 3.706 6 O -0.458 6.458 7 N -0.342 5.342 8 C -0.012 4.012 9 C -0.155 4.155 10 C 0.026 3.974 11 H 0.064 0.936 12 O -0.297 6.297 13 C -0.021 4.021 14 C -0.022 4.022 15 N -0.330 5.330 16 C -0.401 4.401 17 H 0.057 0.943 18 C -0.187 4.187 19 N -0.559 5.559 20 Si 0.728 3.272 21 H -0.229 1.229 22 H -0.218 1.218 23 H -0.168 1.168 24 C 0.022 3.978 25 H 0.080 0.920 26 C -0.008 4.008 27 C -0.158 4.158 28 C -0.217 4.217 29 C -0.220 4.220 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.096 0.904 39 H 0.143 0.857 40 H 0.130 0.870 41 H 0.107 0.893 42 H 0.137 0.863 43 H 0.066 0.934 44 H 0.048 0.952 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.063 0.937 49 H 0.140 0.860 50 H 0.112 0.888 51 H 0.124 0.876 52 H 0.121 0.879 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 15.551 -9.792 -19.032 26.456 hybrid contribution -1.002 1.707 0.590 2.065 sum 14.549 -8.086 -18.442 24.842 Atomic orbital electron populations 1.22007 0.95265 1.01542 1.01716 1.19710 0.94895 0.94423 0.92218 1.22148 1.00615 0.96371 1.01750 1.21813 1.03609 1.00845 0.89447 1.21513 0.79474 0.84341 0.85318 1.90595 1.39983 1.28794 1.86406 1.48351 1.51109 1.29896 1.04871 1.21961 0.93126 0.83782 1.02293 1.21857 1.02689 0.98676 0.92275 1.22256 0.86571 0.93853 0.94693 0.93608 1.87748 1.30972 1.81649 1.29312 1.23029 1.00017 0.94616 0.84415 1.22040 0.88627 0.96540 0.95033 1.44535 1.01852 1.71541 1.15057 1.18432 0.87151 0.97621 1.36902 0.94312 1.26055 0.96588 0.99717 0.96325 1.70109 1.36917 1.26596 1.22317 0.86479 0.81275 0.81918 0.77537 1.22924 1.21802 1.16810 1.21835 0.96825 0.93199 0.85961 0.91965 1.21698 0.97774 0.95895 0.85419 1.22293 1.03907 0.99430 0.90188 1.23196 0.92486 1.02513 1.03531 1.22963 0.98405 1.03242 0.97402 0.93182 0.93118 0.92434 0.91989 0.93145 0.93101 0.86381 0.86202 0.90449 0.85669 0.86975 0.89264 0.86345 0.93436 0.95182 0.92380 0.92382 0.92731 0.93719 0.86025 0.88819 0.87642 0.87878 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 8.02 71.98 0.58 -2.97 16 2 C -0.01 -0.23 0.62 -52.18 -0.03 -0.27 16 3 C -0.15 -3.49 6.77 71.98 0.49 -3.00 16 4 C -0.12 -2.08 3.10 29.85 0.09 -1.99 16 5 C 0.50 14.48 7.11 87.66 0.62 15.10 16 6 O -0.58 -22.17 10.76 -3.03 -0.03 -22.21 16 7 N -0.61 -17.46 2.96 -819.03 -2.43 -19.88 16 8 C 0.11 2.06 6.17 86.34 0.53 2.59 16 9 C -0.12 -2.33 5.82 30.48 0.18 -2.16 16 10 C 0.09 2.63 2.73 30.49 0.08 2.71 16 11 H 0.05 1.51 8.11 -2.38 -0.02 1.49 16 12 O -0.38 -11.71 9.59 -148.98 -1.43 -13.14 16 13 C 0.06 1.85 6.97 72.06 0.50 2.35 16 14 C 0.10 4.26 4.32 86.33 0.37 4.64 16 15 N -0.61 -28.60 2.13 -672.44 -1.43 -30.03 16 16 C -0.27 -15.50 9.78 84.03 0.82 -14.68 16 17 H 0.04 2.45 8.06 -2.91 -0.02 2.43 16 18 C 0.01 0.81 4.92 84.86 0.42 1.22 16 19 N -0.92 -56.72 13.97 21.65 0.30 -56.42 16 20 Si 0.90 46.51 27.53 68.60 1.89 48.40 16 21 H -0.30 -16.36 7.11 99.48 0.71 -15.65 16 22 H -0.29 -14.76 7.11 99.48 0.71 -14.05 16 23 H -0.24 -11.82 5.18 99.48 0.52 -11.30 16 24 C 0.13 5.10 3.00 44.94 0.13 5.24 16 25 H 0.06 2.67 8.03 -2.38 -0.02 2.65 16 26 C 0.12 4.54 5.62 86.42 0.49 5.03 16 27 C -0.14 -1.96 5.14 -10.80 -0.06 -2.01 16 28 C -0.18 -2.33 9.57 30.62 0.29 -2.03 16 29 C -0.18 -2.58 9.39 30.62 0.29 -2.29 16 30 H 0.05 1.60 5.51 -2.38 -0.01 1.59 16 31 H 0.05 1.15 7.29 -2.39 -0.02 1.14 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.22 6.97 -2.38 -0.02 1.20 16 34 H 0.05 1.11 7.07 -2.39 -0.02 1.09 16 35 H 0.05 1.57 5.51 -2.39 -0.01 1.56 16 36 H 0.12 1.51 7.93 -2.38 -0.02 1.49 16 37 H 0.12 1.48 7.72 -2.38 -0.02 1.47 16 38 H 0.08 1.49 7.94 -2.39 -0.02 1.47 16 39 H 0.13 1.29 5.96 -2.39 -0.01 1.28 16 40 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 42 H 0.12 3.04 8.14 -2.38 -0.02 3.02 16 43 H 0.05 1.57 8.13 -2.39 -0.02 1.55 16 44 H 0.03 1.28 5.59 -2.39 -0.01 1.27 16 45 H 0.06 2.60 7.34 -2.39 -0.02 2.59 16 46 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 47 H 0.05 2.19 6.56 -2.39 -0.02 2.17 16 48 H 0.04 2.09 7.00 -2.39 -0.02 2.08 16 49 H 0.12 1.28 8.11 -2.39 -0.02 1.26 16 50 H 0.09 1.35 5.85 -2.39 -0.01 1.33 16 51 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 52 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 53 H 0.08 1.35 7.07 -2.39 -0.02 1.33 16 Total: -1.00 -73.26 384.32 3.37 -69.89 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.70 Total: 15.90 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 5.80 Total: 7.48 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -3.56 Total: -106.34 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -1.46 Total: -35.34 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.89 Total: 48.40 kcal Total: -73.26 3.37 -69.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074235090.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.129 kcal (2) G-P(sol) polarization free energy of solvation -73.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds