Wall clock time and date at job start Tue Mar 31 2020 20:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.32995 * 119.99770 * 2 1 4 4 C 1.50700 * 119.99516 * 179.97438 * 3 2 1 5 5 C 1.47098 * 120.00101 * 0.02562 * 3 2 1 6 6 O 1.21618 * 119.99619 * 259.36448 * 5 3 2 7 7 N 1.34774 * 120.00397 * 79.36730 * 5 3 2 8 8 C 1.46928 * 120.62642 * 4.70437 * 7 5 3 9 9 C 1.53628 * 108.54446 * 126.36912 * 8 7 5 10 10 C 1.53033 * 109.24197 * 54.84949 * 9 8 7 11 11 C 1.53001 * 109.46015 * 178.49312 * 10 9 8 12 12 H 1.09003 * 109.48067 * 59.86986 * 11 10 9 13 13 O 1.42907 * 109.47921 * 299.83847 * 11 10 9 14 14 C 1.42907 * 114.09530 * 178.85978 * 13 11 10 15 15 C 1.53089 * 109.41605 * 61.15713 * 14 13 11 16 16 C 1.53172 * 109.16405 * 302.38849 * 15 14 13 17 17 C 1.53094 * 109.48451 * 179.89636 * 11 10 9 18 18 H 1.09005 * 109.51947 * 297.56038 * 17 11 10 19 19 N 1.46500 * 109.52142 * 57.68415 * 17 11 10 20 20 C 1.36942 * 119.99856 * 207.12358 * 19 17 11 21 21 H 1.07999 * 120.00049 * 0.02562 * 20 19 17 22 22 C 1.38814 * 119.99805 * 179.97438 * 20 19 17 23 23 N 1.31617 * 119.99920 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99860 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47493 * 59.99781 * 24 22 20 26 26 H 1.48500 * 109.46840 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46762 * 299.99684 * 24 22 20 28 28 C 1.53041 * 109.54199 * 298.51149 * 10 9 8 29 29 C 1.46921 * 120.63209 * 184.97736 * 7 5 3 30 30 H 1.08999 * 109.46731 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46919 * 299.99534 * 1 2 3 32 32 H 1.08998 * 109.47108 * 59.99735 * 1 2 3 33 33 H 1.08000 * 119.99662 * 179.97438 * 2 1 3 34 34 H 1.09003 * 109.47090 * 265.08531 * 4 3 2 35 35 H 1.09007 * 109.46737 * 145.08498 * 4 3 2 36 36 H 1.08999 * 109.47444 * 25.08784 * 4 3 2 37 37 H 1.09000 * 109.57889 * 246.19684 * 8 7 5 38 38 H 1.09001 * 109.58913 * 6.62189 * 8 7 5 39 39 H 1.09002 * 109.63105 * 294.85862 * 9 8 7 40 40 H 1.09004 * 109.42996 * 174.71922 * 9 8 7 41 41 H 1.09001 * 109.46154 * 58.53422 * 10 9 8 42 42 H 1.08992 * 109.47980 * 301.16925 * 14 13 11 43 43 H 1.09009 * 109.47572 * 181.13957 * 14 13 11 44 44 H 1.09001 * 109.52185 * 182.48293 * 15 14 13 45 45 H 1.09000 * 109.52248 * 62.29874 * 15 14 13 46 46 H 1.08997 * 109.54748 * 297.11576 * 16 15 14 47 47 H 1.09002 * 109.54547 * 176.84764 * 16 15 14 48 48 H 0.96994 * 120.00288 * 27.11939 * 19 17 11 49 49 H 0.97007 * 119.99818 * 179.97438 * 23 22 20 50 50 H 1.08991 * 109.49851 * 301.41587 * 28 10 9 51 51 H 1.08999 * 109.50083 * 181.31831 * 28 10 9 52 52 H 1.09000 * 109.58992 * 353.37272 * 29 7 5 53 53 H 1.09001 * 109.58773 * 113.80321 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6790 1.1517 0.0006 5 6 1.4365 2.4257 0.0006 6 8 1.3004 3.0497 -1.0344 7 7 0.9134 2.9014 1.1480 8 6 1.1564 2.2133 2.4232 9 6 1.7241 3.2292 3.4262 10 6 0.7723 4.4232 3.5279 11 6 1.3141 5.4209 4.5537 12 1 2.2998 5.7651 4.2404 13 8 1.4143 4.7854 5.8297 14 6 1.9370 5.6258 6.8606 15 6 1.0116 6.8300 7.0536 16 6 0.8810 7.5817 5.7254 17 6 0.3637 6.6169 4.6540 18 1 0.3193 7.1285 3.6926 19 7 -0.9749 6.1489 5.0218 20 6 -2.0784 6.8696 4.6499 21 1 -1.9618 7.7827 4.0852 22 6 -3.3468 6.4259 4.9980 23 7 -3.4889 5.3123 5.6850 24 14 -4.8521 7.4086 4.4901 25 1 -4.9010 7.5094 3.0094 26 1 -6.0768 6.7273 4.9812 27 1 -4.7750 8.7707 5.0767 28 6 0.6598 5.1060 2.1629 29 6 0.0846 4.1145 1.1465 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 2.0470 -0.9353 0.0004 34 1 4.0420 1.2400 1.0246 35 1 4.0426 1.9943 -0.5877 36 1 4.0425 0.2209 -0.4348 37 1 0.2194 1.8056 2.8026 38 1 1.8738 1.4066 2.2723 39 1 2.7020 3.5712 3.0872 40 1 1.8219 2.7575 4.4040 41 1 -0.2120 4.0772 3.8431 42 1 2.9308 5.9726 6.5778 43 1 1.9997 5.0626 7.7918 44 1 1.4314 7.4947 7.8086 45 1 0.0287 6.4861 7.3757 46 1 1.8557 7.9684 5.4278 47 1 0.1795 8.4078 5.8414 48 1 -1.0797 5.3286 5.5287 49 1 -4.3753 5.0024 5.9285 50 1 1.6476 5.4303 1.8358 51 1 0.0002 5.9701 2.2416 52 1 0.0946 4.5628 0.1530 53 1 -0.9380 3.8587 1.4240 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075408987.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:27 Heat of formation + Delta-G solvation = -85.505897 kcal Electronic energy + Delta-G solvation = -31486.311525 eV Core-core repulsion = 27550.097504 eV Total energy + Delta-G solvation = -3936.214021 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.54407 -40.58877 -38.28322 -36.42525 -36.27675 -34.53616 -34.05975 -32.07790 -32.01979 -31.09322 -29.91983 -27.25272 -25.89277 -25.68472 -24.74839 -24.37692 -23.52654 -22.52554 -20.96210 -20.33891 -19.25714 -19.14208 -17.72718 -17.17508 -16.88570 -16.63367 -16.47796 -16.42433 -15.75905 -15.59792 -15.21625 -15.11413 -15.03973 -14.76868 -14.60092 -14.46752 -14.20976 -13.93627 -13.75125 -13.66137 -13.52673 -13.35813 -13.22200 -13.05688 -12.83443 -12.70007 -12.62533 -12.43146 -12.34139 -12.19999 -12.13187 -12.00508 -11.75782 -11.61696 -11.48760 -11.37814 -10.99084 -10.82793 -10.81356 -10.15883 -9.85275 -9.69487 -8.86850 -7.86643 -5.11445 0.82039 1.47060 1.47761 1.53467 1.54729 2.05554 2.58304 2.92155 3.45512 3.49349 3.72233 3.85324 3.94802 4.00810 4.06208 4.11657 4.18808 4.21452 4.25894 4.31739 4.33523 4.39759 4.44018 4.55500 4.58972 4.61419 4.65265 4.71361 4.76112 4.79943 4.81510 4.85216 4.88315 4.90881 4.95370 5.00707 5.05259 5.09541 5.15535 5.17292 5.20111 5.26078 5.44962 5.47530 5.53000 5.54746 5.61038 5.63225 5.67197 6.33669 6.38448 6.49979 7.07558 7.42651 8.21633 8.46119 9.36023 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011300 B = 0.003787 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.197332 B = 7391.579501 C = 8871.362513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 C -0.186 4.186 4 C -0.099 4.099 5 C 0.555 3.445 6 O -0.593 6.593 7 N -0.598 5.598 8 C 0.111 3.889 9 C -0.114 4.114 10 C -0.066 4.066 11 C 0.102 3.898 12 H 0.072 0.928 13 O -0.389 6.389 14 C 0.066 3.934 15 C -0.144 4.144 16 C -0.137 4.137 17 C 0.139 3.861 18 H 0.052 0.948 19 N -0.714 5.714 20 C -0.227 4.227 21 H 0.068 0.932 22 C -0.068 4.068 23 N -0.964 5.964 24 Si 0.957 3.043 25 H -0.282 1.282 26 H -0.299 1.299 27 H -0.284 1.284 28 C -0.111 4.111 29 C 0.116 3.884 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.160 0.840 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.110 0.890 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.099 0.901 44 H 0.078 0.922 45 H 0.039 0.961 46 H 0.074 0.926 47 H 0.039 0.961 48 H 0.376 0.624 49 H 0.247 0.753 50 H 0.071 0.929 51 H 0.068 0.932 52 H 0.078 0.922 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.593 -9.676 -4.947 20.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 C -0.189 4.189 4 C -0.156 4.156 5 C 0.345 3.655 6 O -0.474 6.474 7 N -0.329 5.329 8 C -0.011 4.011 9 C -0.152 4.152 10 C -0.085 4.085 11 C 0.044 3.956 12 H 0.090 0.910 13 O -0.308 6.308 14 C -0.010 4.010 15 C -0.182 4.182 16 C -0.177 4.177 17 C 0.029 3.971 18 H 0.070 0.930 19 N -0.354 5.354 20 C -0.359 4.359 21 H 0.086 0.914 22 C -0.261 4.261 23 N -0.615 5.615 24 Si 0.788 3.212 25 H -0.209 1.209 26 H -0.226 1.226 27 H -0.210 1.210 28 C -0.149 4.149 29 C -0.006 4.006 30 H 0.109 0.891 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.177 0.823 34 H 0.105 0.895 35 H 0.071 0.929 36 H 0.112 0.888 37 H 0.084 0.916 38 H 0.128 0.872 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.117 0.883 44 H 0.097 0.903 45 H 0.058 0.942 46 H 0.092 0.908 47 H 0.058 0.942 48 H 0.209 0.791 49 H 0.055 0.945 50 H 0.090 0.910 51 H 0.086 0.914 52 H 0.096 0.904 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 17.350 -9.400 -5.523 20.491 hybrid contribution -1.767 1.074 0.110 2.071 sum 15.584 -8.325 -5.413 18.479 Atomic orbital electron populations 1.21036 0.93512 1.03915 1.01370 1.23610 0.95919 0.97445 0.94797 1.21525 0.98171 0.91574 1.07637 1.20710 0.87860 1.03680 1.03364 1.19185 0.77847 0.85948 0.82528 1.90755 1.62030 1.61112 1.33516 1.48238 1.49904 1.26859 1.07886 1.21982 1.01772 0.95357 0.81961 1.21905 0.98362 0.95267 0.99639 1.20876 0.99528 0.95212 0.92846 1.22291 0.97090 0.92404 0.83815 0.91044 1.87864 1.85676 1.38850 1.18438 1.22622 0.95521 0.91594 0.91271 1.21980 1.00068 0.98267 0.97868 1.22165 1.00164 0.98580 0.96801 1.21114 0.85852 0.94094 0.95996 0.92986 1.42314 0.99875 1.27709 1.65501 1.19483 0.86190 1.03668 1.26572 0.91376 1.25292 0.99655 0.98832 1.02283 1.69806 1.21765 1.24355 1.45585 0.85456 0.79996 0.78007 0.77774 1.20871 1.22598 1.21030 1.21752 1.01481 0.97928 0.93744 1.21461 0.93594 0.85444 1.00150 0.89107 0.91963 0.93302 0.82269 0.89520 0.92938 0.88818 0.91606 0.87183 0.90772 0.89492 0.92512 0.91492 0.88272 0.90304 0.94197 0.90754 0.94163 0.79119 0.94452 0.91015 0.91389 0.90388 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.16 71.24 0.65 -1.95 16 2 C -0.10 -1.58 9.69 24.52 0.24 -1.34 16 3 C -0.19 -3.73 3.83 -18.70 -0.07 -3.80 16 4 C -0.10 -1.43 10.04 71.24 0.72 -0.72 16 5 C 0.55 15.81 5.94 86.57 0.51 16.32 16 6 O -0.59 -22.05 16.52 -4.09 -0.07 -22.11 16 7 N -0.60 -16.08 2.84 -822.33 -2.34 -18.42 16 8 C 0.11 2.45 5.64 86.51 0.49 2.94 16 9 C -0.11 -2.67 5.25 30.82 0.16 -2.51 16 10 C -0.07 -2.01 1.77 -10.77 -0.02 -2.03 16 11 C 0.10 3.16 1.92 30.63 0.06 3.22 16 12 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 13 O -0.39 -12.50 9.32 -148.98 -1.39 -13.89 16 14 C 0.07 1.77 6.84 72.01 0.49 2.27 16 15 C -0.14 -4.55 5.97 30.68 0.18 -4.37 16 16 C -0.14 -4.59 5.72 30.71 0.18 -4.41 16 17 C 0.14 5.15 2.19 45.08 0.10 5.25 16 18 H 0.05 1.98 6.46 -2.38 -0.02 1.96 16 19 N -0.71 -34.06 3.72 -322.50 -1.20 -35.26 16 20 C -0.23 -12.19 9.94 84.03 0.84 -11.36 16 21 H 0.07 3.57 7.83 -2.91 -0.02 3.55 16 22 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 23 N -0.96 -58.25 13.06 21.65 0.28 -57.96 16 24 Si 0.96 46.32 29.55 68.60 2.03 48.35 16 25 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 26 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 27 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 28 C -0.11 -3.35 5.04 30.67 0.15 -3.20 16 29 C 0.12 3.61 6.44 86.37 0.56 4.17 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.06 1.29 7.25 -2.39 -0.02 1.27 16 32 H 0.05 1.11 8.09 -2.39 -0.02 1.09 16 33 H 0.16 1.43 8.02 -2.91 -0.02 1.41 16 34 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 35 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.09 0.91 8.01 -2.39 -0.02 0.89 16 37 H 0.07 1.56 8.09 -2.39 -0.02 1.54 16 38 H 0.11 1.84 6.23 -2.39 -0.01 1.83 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.09 2.03 7.65 -2.38 -0.02 2.01 16 41 H 0.06 2.23 7.36 -2.39 -0.02 2.21 16 42 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 44 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.04 1.60 7.76 -2.39 -0.02 1.58 16 46 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.38 19.97 7.23 -92.71 -0.67 19.30 16 49 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 50 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 51 H 0.07 2.35 6.41 -2.39 -0.02 2.33 16 52 H 0.08 2.59 6.99 -2.39 -0.02 2.58 16 53 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -69.59 406.58 3.23 -66.37 By element: Atomic # 1 Polarization: 37.61 SS G_CDS: 0.21 Total: 37.82 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: 5.70 Total: -4.90 kcal Atomic # 7 Polarization: -108.39 SS G_CDS: -3.26 Total: -111.64 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -1.46 Total: -36.00 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -69.59 3.23 -66.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075408987.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.136 kcal (2) G-P(sol) polarization free energy of solvation -69.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds