Wall clock time and date at job start Tue Mar 31 2020 19:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46792 * 2 1 4 4 C 1.53005 * 109.47206 * 119.99661 * 2 1 3 5 5 C 1.50703 * 109.46805 * 65.00328 * 4 2 1 6 6 O 1.21282 * 119.99872 * 359.97438 * 5 4 2 7 7 N 1.34774 * 119.99976 * 180.02562 * 5 4 2 8 8 C 1.47536 * 125.55151 * 0.02562 * 7 5 4 9 9 C 1.54102 * 104.82929 * 203.95604 * 8 7 5 10 10 C 1.52124 * 110.65896 * 205.72563 * 9 8 7 11 11 C 1.53333 * 109.47751 * 295.69187 * 10 9 8 12 12 N 1.46936 * 108.69063 * 306.68967 * 11 10 9 13 13 C 1.36939 * 120.56420 * 234.37579 * 12 11 10 14 14 H 1.08001 * 120.00434 * 151.59285 * 13 12 11 15 15 C 1.38820 * 119.99597 * 331.59069 * 13 12 11 16 16 N 1.31613 * 119.99844 * 342.95079 * 15 13 12 17 17 Si 1.86795 * 119.99767 * 162.95681 * 15 13 12 18 18 H 1.48500 * 109.47203 * 90.00025 * 17 15 13 19 19 H 1.48496 * 109.47028 * 210.00079 * 17 15 13 20 20 H 1.48498 * 109.47468 * 329.99988 * 17 15 13 21 21 C 1.46942 * 118.87521 * 54.34997 * 12 11 10 22 22 C 1.52156 * 110.61080 * 81.59838 * 9 8 7 23 23 C 1.54468 * 102.62114 * 323.79860 * 9 8 7 24 24 H 1.08999 * 114.25464 * 157.85176 * 23 9 8 25 25 C 1.54079 * 108.56792 * 285.65570 * 23 9 8 26 26 O 1.42886 * 107.19032 * 134.72676 * 25 23 9 27 27 C 1.42828 * 110.66622 * 341.83002 * 26 25 23 28 28 C 1.46775 * 125.55477 * 179.97438 * 7 5 4 29 29 H 1.08998 * 111.54019 * 55.51682 * 28 7 5 30 30 H 1.08994 * 109.46958 * 60.00438 * 1 2 3 31 31 H 1.08999 * 109.46407 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47128 * 300.00116 * 1 2 3 33 33 H 1.08996 * 109.47128 * 239.99884 * 2 1 3 34 34 H 1.08999 * 109.46637 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.47011 * 299.99529 * 3 2 1 36 36 H 1.08996 * 109.47379 * 60.00037 * 3 2 1 37 37 H 1.08998 * 109.47208 * 305.00621 * 4 2 1 38 38 H 1.08996 * 109.47086 * 185.00222 * 4 2 1 39 39 H 1.08994 * 110.38491 * 322.82698 * 8 7 5 40 40 H 1.08997 * 110.38412 * 85.08924 * 8 7 5 41 41 H 1.08998 * 109.46795 * 55.69241 * 10 9 8 42 42 H 1.09000 * 109.46614 * 175.68532 * 10 9 8 43 43 H 1.08995 * 109.60292 * 186.92571 * 11 10 9 44 44 H 1.08999 * 109.73279 * 66.52375 * 11 10 9 45 45 H 0.96997 * 119.99994 * 179.97438 * 16 15 13 46 46 H 1.08999 * 109.60539 * 185.86473 * 21 12 11 47 47 H 1.09000 * 109.73773 * 65.45684 * 21 12 11 48 48 H 1.09001 * 109.46715 * 184.29916 * 22 9 8 49 49 H 1.08998 * 109.46968 * 304.29906 * 22 9 8 50 50 H 1.08997 * 109.89670 * 254.11671 * 25 23 9 51 51 H 1.09002 * 109.89929 * 15.16480 * 25 23 9 52 52 H 1.09000 * 109.69999 * 242.11475 * 27 26 25 53 53 H 1.08993 * 109.70267 * 121.62572 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6415 -2.1733 1.1889 6 8 1.0111 -2.5901 0.2404 7 7 1.9846 -3.0084 2.1895 8 6 2.7456 -2.6338 3.3967 9 6 3.3903 -3.9474 3.8800 10 6 3.6603 -3.8941 5.3761 11 6 4.6953 -2.8017 5.6702 12 7 5.8766 -3.0331 4.8277 13 6 7.1218 -3.1373 5.3879 14 1 7.8835 -3.7313 4.9047 15 6 7.4052 -2.4792 6.5769 16 7 6.6237 -1.5051 6.9923 17 14 8.8957 -2.9763 7.5872 18 1 10.0736 -2.1816 7.1556 19 1 8.6264 -2.7214 9.0251 20 1 9.1720 -4.4211 7.3839 21 6 5.6992 -3.1515 3.3738 22 6 4.6589 -4.2425 3.0935 23 6 2.3015 -4.9954 3.5600 24 1 2.6753 -6.0150 3.4661 25 6 1.1634 -4.8502 4.5885 26 8 -0.0677 -4.8905 3.8644 27 6 0.1538 -4.6269 2.4782 28 6 1.6612 -4.4386 2.2563 29 1 2.0171 -4.9710 1.3743 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 1.6054 -0.2617 2.1370 38 1 3.1264 -0.6442 1.2952 39 1 3.5145 -1.9022 3.1489 40 1 2.0760 -2.2364 4.1595 41 1 2.7341 -3.6688 5.9046 42 1 4.0442 -4.8579 5.7105 43 1 4.9818 -2.8428 6.7210 44 1 4.2716 -1.8230 5.4448 45 1 6.8214 -1.0456 7.8233 46 1 6.6477 -3.4230 2.9105 47 1 5.3519 -2.2019 2.9668 48 1 5.0572 -5.2108 3.3964 49 1 4.4298 -4.2611 2.0280 50 1 1.2011 -5.6732 5.3021 51 1 1.2569 -3.8996 5.1135 52 1 -0.3764 -3.7201 2.1873 53 1 -0.2033 -5.4671 1.8828 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079220052.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:54 Heat of formation + Delta-G solvation = -77.890233 kcal Electronic energy + Delta-G solvation = -32076.196378 eV Core-core repulsion = 28140.312597 eV Total energy + Delta-G solvation = -3935.883781 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.61238 -40.26133 -39.08170 -36.96877 -36.40331 -34.81259 -33.18011 -31.86907 -31.35173 -29.90707 -28.94306 -27.96787 -27.54631 -26.27281 -24.79865 -23.66654 -23.14845 -21.91643 -21.04443 -20.31152 -19.60757 -18.67697 -18.19408 -17.41641 -17.11457 -16.78755 -16.59386 -16.38333 -15.76314 -15.73725 -15.58437 -15.34760 -14.95454 -14.71626 -14.66878 -14.55178 -14.27384 -13.76460 -13.56488 -13.35731 -13.15264 -13.09774 -13.00766 -12.91925 -12.82914 -12.76204 -12.58204 -12.51534 -12.37136 -12.10566 -12.07557 -11.93729 -11.80661 -11.74154 -11.60892 -11.48719 -11.11650 -11.04204 -10.73655 -10.47459 -10.40386 -9.73977 -8.60497 -7.83830 -5.27707 1.48207 1.51341 1.57030 1.59230 1.87869 2.54277 2.85550 3.05089 3.28491 3.43895 3.64734 3.71595 3.75842 3.84301 3.88412 3.98658 4.01730 4.05060 4.16577 4.26572 4.32154 4.36935 4.52158 4.55134 4.59904 4.66599 4.69277 4.70254 4.71958 4.75078 4.77425 4.83840 4.86082 4.92511 4.97237 5.02619 5.08546 5.09083 5.16692 5.19296 5.24291 5.30430 5.33432 5.40849 5.45627 5.49274 5.57524 5.69828 5.84025 6.02439 6.43798 6.44353 7.10691 7.20761 7.92088 8.41947 9.21615 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012309 B = 0.003854 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.197139 B = 7263.792139 C = 8781.128136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.077 4.077 3 C -0.144 4.144 4 C -0.133 4.133 5 C 0.528 3.472 6 O -0.567 6.567 7 N -0.608 5.608 8 C 0.112 3.888 9 C -0.039 4.039 10 C -0.117 4.117 11 C 0.178 3.822 12 N -0.606 5.606 13 C -0.261 4.261 14 H 0.062 0.938 15 C -0.043 4.043 16 N -0.930 5.930 17 Si 0.957 3.043 18 H -0.288 1.288 19 H -0.294 1.294 20 H -0.273 1.273 21 C 0.143 3.857 22 C -0.104 4.104 23 C -0.111 4.111 24 H 0.129 0.871 25 C 0.054 3.946 26 O -0.396 6.396 27 C 0.054 3.946 28 C 0.110 3.890 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.062 0.938 43 H 0.052 0.948 44 H 0.005 0.995 45 H 0.249 0.751 46 H 0.048 0.952 47 H 0.018 0.982 48 H 0.064 0.936 49 H 0.067 0.933 50 H 0.098 0.902 51 H 0.066 0.934 52 H 0.055 0.945 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.512 -2.129 -9.614 15.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.096 4.096 3 C -0.201 4.201 4 C -0.172 4.172 5 C 0.319 3.681 6 O -0.446 6.446 7 N -0.341 5.341 8 C -0.011 4.011 9 C -0.040 4.040 10 C -0.156 4.156 11 C 0.052 3.948 12 N -0.329 5.329 13 C -0.391 4.391 14 H 0.079 0.921 15 C -0.239 4.239 16 N -0.576 5.576 17 Si 0.786 3.214 18 H -0.215 1.215 19 H -0.220 1.220 20 H -0.198 1.198 21 C 0.018 3.982 22 C -0.143 4.143 23 C -0.130 4.130 24 H 0.147 0.853 25 C -0.022 4.022 26 O -0.315 6.315 27 C -0.023 4.023 28 C 0.006 3.994 29 H 0.120 0.880 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.023 0.977 45 H 0.058 0.942 46 H 0.066 0.934 47 H 0.035 0.965 48 H 0.083 0.917 49 H 0.085 0.915 50 H 0.117 0.883 51 H 0.084 0.916 52 H 0.073 0.927 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.037 -2.222 -9.958 15.779 hybrid contribution 1.212 0.141 0.697 1.405 sum -10.825 -2.080 -9.262 14.397 Atomic orbital electron populations 1.21901 0.94973 1.01946 1.01752 1.20841 0.96364 0.96258 0.96178 1.21827 1.01210 0.94502 1.02608 1.21830 1.03530 0.90250 1.01612 1.20818 0.78244 0.88756 0.80270 1.90637 1.41604 1.78547 1.33846 1.48618 1.55269 1.09098 1.21148 1.22422 0.94528 0.98001 0.86100 1.20847 0.94004 0.92962 0.96197 1.21975 0.99437 1.00675 0.93559 1.20626 0.85403 0.93130 0.95642 1.44255 1.03105 1.84399 1.01160 1.19441 0.90847 1.22871 1.05976 0.92054 1.25641 1.00482 0.96123 1.01638 1.70142 1.41271 1.23050 1.23115 0.85433 0.79815 0.78198 0.77920 1.21529 1.21995 1.19773 1.21043 0.96959 0.95535 0.84663 1.21662 0.94355 0.99646 0.98663 1.23671 0.95720 1.00902 0.92664 0.85340 1.23417 0.81520 1.02806 0.94475 1.88145 1.31181 1.92754 1.19451 1.23180 0.95225 1.01107 0.82825 1.22738 0.94375 0.82501 0.99779 0.87961 0.92113 0.93080 0.92676 0.91824 0.92341 0.91580 0.92046 0.88018 0.88212 0.90175 0.91039 0.90448 0.91954 0.92918 0.97740 0.94179 0.93360 0.96464 0.91735 0.91487 0.88348 0.91574 0.92706 0.89541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.93 71.98 0.64 -2.48 16 2 C -0.08 -1.60 2.57 -10.79 -0.03 -1.63 16 3 C -0.14 -2.41 9.19 71.98 0.66 -1.75 16 4 C -0.13 -2.91 4.18 29.85 0.12 -2.78 16 5 C 0.53 14.05 7.13 87.66 0.62 14.68 16 6 O -0.57 -17.78 13.94 -3.04 -0.04 -17.82 16 7 N -0.61 -15.32 2.96 -786.62 -2.32 -17.64 16 8 C 0.11 2.91 4.19 86.55 0.36 3.27 16 9 C -0.04 -1.03 0.37 -51.88 -0.02 -1.05 16 10 C -0.12 -3.62 4.43 30.42 0.13 -3.48 16 11 C 0.18 7.51 5.05 86.41 0.44 7.95 16 12 N -0.61 -27.50 2.98 -698.50 -2.08 -29.58 16 13 C -0.26 -13.50 9.57 84.04 0.80 -12.70 16 14 H 0.06 3.14 7.89 -2.91 -0.02 3.12 16 15 C -0.04 -2.28 4.91 84.86 0.42 -1.86 16 16 N -0.93 -51.94 11.20 21.65 0.24 -51.70 16 17 Si 0.96 43.03 29.59 68.60 2.03 45.06 16 18 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 19 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 21 C 0.14 5.30 6.20 86.40 0.54 5.84 16 22 C -0.10 -3.00 4.91 30.42 0.15 -2.85 16 23 C -0.11 -2.42 3.50 -9.05 -0.03 -2.45 16 24 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 25 C 0.05 1.20 6.18 72.35 0.45 1.65 16 26 O -0.40 -10.32 11.27 -148.98 -1.68 -12.00 16 27 C 0.05 1.31 7.35 72.16 0.53 1.85 16 28 C 0.11 2.57 3.32 45.99 0.15 2.73 16 29 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.05 1.32 5.95 -2.39 -0.01 1.30 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 1.48 7.95 -2.39 -0.02 1.46 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.10 2.04 8.14 -2.39 -0.02 2.03 16 38 H 0.10 2.11 7.84 -2.39 -0.02 2.09 16 39 H 0.08 2.27 5.52 -2.39 -0.01 2.26 16 40 H 0.07 1.85 7.14 -2.39 -0.02 1.83 16 41 H 0.08 2.10 5.82 -2.39 -0.01 2.08 16 42 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.05 2.63 6.03 -2.39 -0.01 2.61 16 44 H 0.00 0.20 7.64 -2.39 -0.02 0.18 16 45 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 46 H 0.05 1.82 7.93 -2.39 -0.02 1.80 16 47 H 0.02 0.65 6.58 -2.39 -0.02 0.63 16 48 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.07 1.75 7.86 -2.39 -0.02 1.73 16 50 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 51 H 0.07 1.57 4.89 -2.39 -0.01 1.55 16 52 H 0.05 1.52 7.41 -2.39 -0.02 1.50 16 53 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -61.36 387.71 2.97 -58.39 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.88 Total: 20.37 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 5.95 Total: 4.94 kcal Atomic # 7 Polarization: -94.76 SS G_CDS: -4.16 Total: -98.93 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -1.72 Total: -29.82 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -61.36 2.97 -58.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079220052.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.505 kcal (2) G-P(sol) polarization free energy of solvation -61.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds