Wall clock time and date at job start Tue Mar 31 2020 21:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47074 * 2 1 4 4 C 1.50696 * 109.47302 * 119.99990 * 2 1 3 5 5 O 1.21285 * 120.00260 * 113.88317 * 4 2 1 6 6 N 1.34777 * 120.00222 * 293.88332 * 4 2 1 7 7 C 1.47809 * 135.00881 * 4.88215 * 6 4 2 8 8 C 1.54650 * 85.79397 * 153.79912 * 7 6 4 9 9 H 1.09000 * 114.44469 * 140.41862 * 8 7 6 10 10 C 1.53012 * 110.83827 * 270.23083 * 8 7 6 11 11 C 1.53096 * 109.45062 * 143.88351 * 10 8 7 12 12 N 1.46627 * 108.01068 * 301.02305 * 11 10 8 13 13 C 1.36932 * 119.89184 * 237.35149 * 12 11 10 14 14 H 1.07995 * 120.00469 * 28.45754 * 13 12 11 15 15 C 1.38815 * 119.99646 * 208.46128 * 13 12 11 16 16 N 1.31621 * 120.00006 * 10.51734 * 15 13 12 17 17 Si 1.86799 * 119.99791 * 190.52408 * 15 13 12 18 18 H 1.48499 * 109.47112 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47144 * 119.99723 * 17 15 13 20 20 H 1.48498 * 109.46988 * 239.99546 * 17 15 13 21 21 C 1.45687 * 120.21140 * 57.33081 * 12 11 10 22 22 C 1.46889 * 135.08988 * 184.74947 * 6 4 2 23 23 H 1.09003 * 110.84386 * 94.70512 * 22 6 4 24 24 C 1.53001 * 109.47278 * 240.00507 * 2 1 3 25 25 H 1.09004 * 109.48282 * 179.97438 * 24 2 1 26 26 C 1.53093 * 109.48520 * 59.93810 * 24 2 1 27 27 C 1.53173 * 109.16546 * 182.40951 * 26 24 2 28 28 C 1.53177 * 109.03549 * 56.97865 * 27 26 24 29 29 C 1.53089 * 109.16882 * 303.02342 * 28 27 26 30 30 O 1.42904 * 109.47679 * 299.99377 * 24 2 1 31 31 H 1.08993 * 109.47720 * 296.71731 * 1 2 3 32 32 H 1.09006 * 109.47478 * 56.72451 * 1 2 3 33 33 H 1.09007 * 109.47023 * 176.71623 * 1 2 3 34 34 H 1.08998 * 109.46886 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.46942 * 300.00204 * 3 2 1 36 36 H 1.08995 * 109.46647 * 59.99702 * 3 2 1 37 37 H 1.09004 * 113.82280 * 39.58626 * 7 6 4 38 38 H 1.08998 * 113.93259 * 268.03261 * 7 6 4 39 39 H 1.09006 * 109.47497 * 23.89231 * 10 8 7 40 40 H 1.09001 * 109.47342 * 263.87822 * 10 8 7 41 41 H 1.09003 * 109.76085 * 181.39878 * 11 10 8 42 42 H 1.09002 * 109.79701 * 60.67671 * 11 10 8 43 43 H 0.97008 * 119.99695 * 180.02562 * 16 15 13 44 44 H 1.08999 * 108.71520 * 81.73888 * 21 12 11 45 45 H 1.08999 * 108.70776 * 199.88443 * 21 12 11 46 46 H 1.08996 * 109.52128 * 302.31768 * 26 24 2 47 47 H 1.09005 * 109.51955 * 62.50403 * 26 24 2 48 48 H 1.09001 * 109.54335 * 297.11974 * 27 26 24 49 49 H 1.09002 * 109.61681 * 176.89191 * 27 26 24 50 50 H 1.08999 * 109.52641 * 183.11234 * 28 27 26 51 51 H 1.09010 * 109.52125 * 62.92920 * 28 27 26 52 52 H 1.09005 * 109.47642 * 297.62725 * 29 28 27 53 53 H 1.09000 * 109.49271 * 177.59545 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.6354 -1.7571 1.1226 6 7 1.8115 -0.1826 2.4507 7 6 1.0642 0.9842 2.9653 8 6 0.9435 0.1825 4.2822 9 1 1.0568 0.7806 5.1864 10 6 -0.3187 -0.6824 4.2792 11 6 -0.0313 -2.0063 4.9924 12 7 1.0661 -2.6735 4.2849 13 6 0.8860 -3.9333 3.7794 14 1 -0.0988 -4.2588 3.4785 15 6 1.9694 -4.7920 3.6538 16 7 3.1232 -4.4809 4.2055 17 14 1.7897 -6.3891 2.7017 18 1 0.4029 -6.5029 2.1831 19 1 2.7450 -6.3977 1.5647 20 1 2.0788 -7.5359 3.5997 21 6 2.3472 -2.0002 4.1176 22 6 2.2106 -0.5282 3.8214 23 1 3.1058 0.0203 4.1147 24 6 2.0400 -0.7211 -1.2493 25 1 3.1301 -0.7208 -1.2497 26 6 1.5286 -0.0005 -2.4995 27 6 1.9930 -0.7624 -3.7444 28 6 1.4928 -2.2078 -3.6611 29 6 2.0055 -2.8433 -2.3661 30 8 1.5639 -2.0685 -1.2495 31 1 -0.3634 0.4620 0.9178 32 1 -0.3634 0.5639 -0.8592 33 1 -0.3633 -1.0260 -0.0589 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9563 0.8899 37 1 0.1112 1.1528 2.4637 38 1 1.6646 1.8896 3.0545 39 1 -0.6203 -0.8817 3.2508 40 1 -1.1206 -0.1569 4.7978 41 1 -0.9202 -2.6367 4.9715 42 1 0.2594 -1.8137 6.0252 43 1 3.8804 -5.0809 4.1173 44 1 2.9276 -2.1205 5.0323 45 1 2.8864 -2.4736 3.2972 46 1 0.4394 0.0351 -2.4794 47 1 1.9268 1.0139 -2.5236 48 1 3.0820 -0.7557 -3.7910 49 1 1.5869 -0.2869 -4.6372 50 1 1.8653 -2.7721 -4.5160 51 1 0.4028 -2.2168 -3.6646 52 1 3.0951 -2.8707 -2.3813 53 1 1.6175 -3.8583 -2.2806 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084350030.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:07 Heat of formation + Delta-G solvation = -46.850505 kcal Electronic energy + Delta-G solvation = -32877.447112 eV Core-core repulsion = 28942.909315 eV Total energy + Delta-G solvation = -3934.537797 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.02527 -40.73480 -38.89598 -37.00508 -36.24976 -34.48145 -33.93641 -31.91987 -31.30843 -29.92753 -28.54575 -28.31634 -26.05141 -25.63639 -25.31447 -24.52110 -22.96824 -22.38664 -21.08536 -20.14855 -19.43393 -18.25129 -17.38244 -17.31272 -17.23465 -17.03276 -16.63472 -16.18325 -15.65541 -15.54317 -15.40676 -15.14111 -15.03387 -14.73869 -14.47333 -14.41351 -14.04313 -13.78518 -13.66672 -13.53100 -13.27999 -13.20149 -13.03670 -13.00975 -12.72357 -12.61699 -12.61323 -12.33283 -12.19692 -12.09752 -12.03443 -11.94014 -11.84753 -11.70297 -11.49430 -11.36722 -11.19550 -11.04438 -10.62837 -10.34083 -9.99912 -9.36581 -8.62172 -7.85047 -5.32269 1.30464 1.37776 1.43679 1.98286 2.06041 2.46361 2.84749 3.31244 3.45693 3.52091 3.62355 3.74825 3.90048 3.93281 3.96030 4.05885 4.07151 4.13343 4.19311 4.30832 4.36323 4.44463 4.53384 4.57161 4.60730 4.62854 4.69517 4.73026 4.76446 4.80123 4.82320 4.91559 4.92419 4.94306 4.98568 5.02080 5.06573 5.07802 5.10282 5.15825 5.17275 5.27663 5.34649 5.34837 5.43269 5.50994 5.56728 5.74947 5.85695 6.41306 6.42803 7.09694 7.20517 7.55805 7.96971 8.36430 9.18774 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010399 B = 0.005666 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.810265 B = 4940.581036 C = 6862.040861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.064 4.064 3 C -0.135 4.135 4 C 0.527 3.473 5 O -0.575 6.575 6 N -0.637 5.637 7 C 0.108 3.892 8 C -0.100 4.100 9 H 0.124 0.876 10 C -0.105 4.105 11 C 0.138 3.862 12 N -0.600 5.600 13 C -0.249 4.249 14 H 0.054 0.946 15 C -0.044 4.044 16 N -0.933 5.933 17 Si 0.955 3.045 18 H -0.268 1.268 19 H -0.305 1.305 20 H -0.281 1.281 21 C 0.185 3.815 22 C 0.107 3.893 23 H 0.084 0.916 24 C 0.110 3.890 25 H 0.029 0.971 26 C -0.143 4.143 27 C -0.120 4.120 28 C -0.146 4.146 29 C 0.052 3.948 30 O -0.391 6.391 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.030 0.970 34 H 0.049 0.951 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.117 0.883 39 H 0.041 0.959 40 H 0.100 0.900 41 H 0.049 0.951 42 H 0.027 0.973 43 H 0.243 0.757 44 H -0.010 1.010 45 H 0.048 0.952 46 H 0.083 0.917 47 H 0.101 0.899 48 H 0.059 0.941 49 H 0.094 0.906 50 H 0.087 0.913 51 H 0.072 0.928 52 H 0.033 0.967 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.691 20.361 -12.109 24.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.067 4.067 3 C -0.192 4.192 4 C 0.317 3.683 5 O -0.453 6.453 6 N -0.372 5.372 7 C -0.013 4.013 8 C -0.119 4.119 9 H 0.141 0.859 10 C -0.144 4.144 11 C 0.013 3.987 12 N -0.324 5.324 13 C -0.380 4.380 14 H 0.072 0.928 15 C -0.239 4.239 16 N -0.580 5.580 17 Si 0.784 3.216 18 H -0.193 1.193 19 H -0.233 1.233 20 H -0.207 1.207 21 C 0.058 3.942 22 C 0.002 3.998 23 H 0.102 0.898 24 C 0.052 3.948 25 H 0.047 0.953 26 C -0.180 4.180 27 C -0.157 4.157 28 C -0.184 4.184 29 C -0.025 4.025 30 O -0.311 6.311 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.119 0.881 36 H 0.103 0.897 37 H 0.118 0.882 38 H 0.134 0.866 39 H 0.060 0.940 40 H 0.118 0.882 41 H 0.067 0.933 42 H 0.045 0.955 43 H 0.052 0.948 44 H 0.008 0.992 45 H 0.066 0.934 46 H 0.102 0.898 47 H 0.119 0.881 48 H 0.078 0.922 49 H 0.112 0.888 50 H 0.106 0.894 51 H 0.091 0.909 52 H 0.051 0.949 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.329 19.556 -12.221 23.913 hybrid contribution 1.048 -2.058 -0.372 2.339 sum -5.281 17.498 -12.593 22.195 Atomic orbital electron populations 1.21802 0.91129 1.01687 1.03880 1.20846 0.98720 0.97065 0.90055 1.21956 1.01004 0.90950 1.05281 1.20824 0.78900 0.84517 0.84023 1.90768 1.43682 1.24577 1.86265 1.49963 1.53311 1.29541 1.04418 1.23869 0.97031 0.89467 0.90922 1.22822 0.93457 0.96325 0.99317 0.85858 1.21726 0.96612 0.95731 1.00302 1.20992 0.90348 0.93533 0.93786 1.43664 1.10962 1.14065 1.63660 1.19322 0.94092 0.90278 1.34332 0.92812 1.25679 0.96740 1.00672 1.00827 1.70169 1.02079 1.37994 1.47775 0.85379 0.77411 0.80777 0.78001 1.19277 1.23305 1.20717 1.19643 0.87345 0.89464 0.97699 1.22575 0.98944 0.97050 0.81199 0.89837 1.21904 0.95922 0.82364 0.94575 0.95320 1.22314 1.02642 1.00219 0.92828 1.21612 1.00877 0.94661 0.98565 1.22143 1.01840 0.97549 0.96841 1.22617 0.97797 0.95162 0.86885 1.88056 1.73402 1.23637 1.45971 0.90978 0.88465 0.95087 0.93157 0.88094 0.89715 0.88191 0.86557 0.94030 0.88197 0.93273 0.95538 0.94826 0.99232 0.93357 0.89836 0.88109 0.92229 0.88755 0.89434 0.90938 0.94863 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 7.86 71.98 0.57 -2.64 16 2 C -0.06 -1.82 0.40 -52.93 -0.02 -1.85 16 3 C -0.13 -2.50 7.95 71.98 0.57 -1.93 16 4 C 0.53 21.75 6.56 87.66 0.57 22.33 16 5 O -0.57 -32.08 14.22 15.64 0.22 -31.85 16 6 N -0.64 -22.58 3.25 -823.40 -2.67 -25.26 16 7 C 0.11 2.34 5.66 86.31 0.49 2.83 16 8 C -0.10 -2.74 4.39 -10.40 -0.05 -2.79 16 9 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 10 C -0.10 -3.25 5.66 30.63 0.17 -3.08 16 11 C 0.14 5.84 6.47 86.39 0.56 6.40 16 12 N -0.60 -32.89 3.01 -707.79 -2.13 -35.02 16 13 C -0.25 -15.50 9.51 84.03 0.80 -14.70 16 14 H 0.05 3.32 7.85 -2.91 -0.02 3.30 16 15 C -0.04 -2.82 5.03 84.86 0.43 -2.39 16 16 N -0.93 -62.38 10.93 21.65 0.24 -62.14 16 17 Si 0.95 52.43 29.57 68.60 2.03 54.46 16 18 H -0.27 -14.03 7.11 99.48 0.71 -13.32 16 19 H -0.31 -17.40 7.11 99.48 0.71 -16.69 16 20 H -0.28 -14.69 7.11 99.48 0.71 -13.99 16 21 C 0.18 10.03 4.57 85.81 0.39 10.42 16 22 C 0.11 4.17 4.22 43.62 0.18 4.36 16 23 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 24 C 0.11 3.37 1.49 30.63 0.05 3.42 16 25 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 26 C -0.14 -2.77 4.70 30.68 0.14 -2.62 16 27 C -0.12 -2.16 6.03 30.71 0.19 -1.97 16 28 C -0.15 -3.17 6.14 30.68 0.19 -2.99 16 29 C 0.05 1.68 6.84 72.01 0.49 2.17 16 30 O -0.39 -15.30 8.43 -130.29 -1.10 -16.39 16 31 H 0.07 1.59 5.51 -2.39 -0.01 1.58 16 32 H 0.10 1.70 6.56 -2.38 -0.02 1.68 16 33 H 0.03 1.02 7.59 -2.38 -0.02 1.00 16 34 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.10 1.20 6.49 -2.39 -0.02 1.19 16 36 H 0.08 1.28 5.79 -2.39 -0.01 1.26 16 37 H 0.10 1.76 5.82 -2.38 -0.01 1.75 16 38 H 0.12 1.68 7.89 -2.39 -0.02 1.66 16 39 H 0.04 1.46 7.69 -2.38 -0.02 1.45 16 40 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.05 2.08 7.90 -2.39 -0.02 2.06 16 42 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.24 15.84 8.31 -92.70 -0.77 15.07 16 44 H -0.01 -0.60 7.93 -2.39 -0.02 -0.62 16 45 H 0.05 3.16 4.95 -2.39 -0.01 3.15 16 46 H 0.08 1.51 6.39 -2.39 -0.02 1.49 16 47 H 0.10 1.39 6.57 -2.38 -0.02 1.38 16 48 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 51 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 52 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 53 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -91.38 385.12 3.19 -88.19 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.89 Total: 13.05 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 5.72 Total: 14.98 kcal Atomic # 7 Polarization: -117.86 SS G_CDS: -4.57 Total: -122.42 kcal Atomic # 8 Polarization: -47.37 SS G_CDS: -0.88 Total: -48.25 kcal Atomic # 14 Polarization: 52.43 SS G_CDS: 2.03 Total: 54.46 kcal Total: -91.38 3.19 -88.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084350030.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.339 kcal (2) G-P(sol) polarization free energy of solvation -91.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds