Wall clock time and date at job start Tue Mar 31 2020 20:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.32993 * 120.00102 * 2 1 4 4 C 1.50699 * 120.00276 * 179.97438 * 3 2 1 5 5 C 1.47102 * 119.99898 * 0.02562 * 3 2 1 6 6 O 1.21610 * 119.99962 * 333.32074 * 5 3 2 7 7 N 1.34779 * 120.00244 * 153.32596 * 5 3 2 8 8 C 1.46921 * 120.63083 * 175.79987 * 7 5 3 9 9 C 1.53195 * 108.77499 * 126.36893 * 8 7 5 10 10 C 1.53039 * 109.33840 * 54.61766 * 9 8 7 11 11 C 1.53001 * 109.45654 * 178.62985 * 10 9 8 12 12 O 1.42900 * 109.46899 * 184.99631 * 11 10 9 13 13 C 1.42903 * 114.00021 * 180.02562 * 12 11 10 14 14 H 1.09005 * 110.64142 * 333.13934 * 13 12 11 15 15 C 1.55161 * 110.72229 * 210.00528 * 13 12 11 16 16 C 1.54903 * 101.58050 * 206.13486 * 15 13 12 17 17 N 1.47427 * 104.83529 * 37.00862 * 16 15 13 18 18 C 1.36936 * 125.64935 * 155.83886 * 17 16 15 19 19 H 1.08000 * 120.00287 * 7.19913 * 18 17 16 20 20 C 1.38813 * 119.99775 * 187.20498 * 18 17 16 21 21 N 1.31625 * 119.99972 * 11.36672 * 20 18 17 22 22 Si 1.86802 * 119.99954 * 191.37066 * 20 18 17 23 23 H 1.48499 * 109.47308 * 84.97207 * 22 20 18 24 24 H 1.48503 * 109.46885 * 204.97496 * 22 20 18 25 25 H 1.48497 * 109.46885 * 324.96996 * 22 20 18 26 26 C 1.47021 * 108.69946 * 335.86902 * 17 16 15 27 27 C 1.53038 * 109.53918 * 298.68095 * 10 9 8 28 28 C 1.46928 * 120.62639 * 355.77476 * 7 5 3 29 29 H 1.09004 * 109.47684 * 299.99930 * 1 2 3 30 30 H 1.08999 * 109.47504 * 60.00077 * 1 2 3 31 31 H 1.09002 * 109.47103 * 180.02562 * 1 2 3 32 32 H 1.08001 * 119.99956 * 179.97438 * 2 1 3 33 33 H 1.08999 * 109.47249 * 276.94148 * 4 3 2 34 34 H 1.09003 * 109.46825 * 36.93896 * 4 3 2 35 35 H 1.09001 * 109.47789 * 156.93752 * 4 3 2 36 36 H 1.08996 * 109.59050 * 6.57611 * 8 7 5 37 37 H 1.09003 * 109.58344 * 246.15184 * 8 7 5 38 38 H 1.08997 * 109.49319 * 174.58304 * 9 8 7 39 39 H 1.08994 * 109.49489 * 294.64579 * 9 8 7 40 40 H 1.08998 * 109.46253 * 58.67504 * 10 9 8 41 41 H 1.08995 * 109.47606 * 304.99749 * 11 10 9 42 42 H 1.08998 * 109.47105 * 65.00176 * 11 10 9 43 43 H 1.09000 * 111.00261 * 324.20910 * 15 13 12 44 44 H 1.09000 * 111.00364 * 88.05833 * 15 13 12 45 45 H 1.09003 * 110.36483 * 155.84270 * 16 15 13 46 46 H 1.08998 * 110.36746 * 278.16631 * 16 15 13 47 47 H 0.97003 * 119.99609 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.88148 * 241.64030 * 26 17 16 49 49 H 1.09003 * 109.87969 * 120.48009 * 26 17 16 50 50 H 1.08997 * 109.47032 * 301.37081 * 27 10 9 51 51 H 1.09000 * 109.52171 * 181.30454 * 27 10 9 52 52 H 1.08996 * 109.59030 * 353.41738 * 28 7 5 53 53 H 1.08996 * 109.58639 * 113.84707 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 3.6789 1.1518 0.0006 5 6 1.4364 2.4257 0.0006 6 8 0.3172 2.4818 -0.4719 7 7 2.0029 3.5307 0.5246 8 6 1.3195 4.8292 0.4504 9 6 1.2246 5.4178 1.8616 10 6 2.6229 5.4778 2.4807 11 6 2.5357 6.0968 3.8772 12 8 3.8521 6.2602 4.4088 13 6 3.8835 6.8336 5.7174 14 1 3.0057 7.4579 5.8845 15 6 5.1859 7.6502 5.9278 16 6 5.3518 7.5798 7.4664 17 7 4.9053 6.2234 7.8325 18 6 5.2828 5.5345 8.9542 19 1 5.8703 6.0243 9.7166 20 6 4.9103 4.2065 9.1112 21 7 4.3935 3.5438 8.0982 22 14 5.1426 3.3601 10.7602 23 1 3.9735 3.6432 11.6310 24 1 5.2613 1.8945 10.5518 25 1 6.3777 3.8695 11.4084 26 6 3.9881 5.7325 6.7936 27 6 3.1979 4.0634 2.5843 28 6 3.3153 3.4595 1.1813 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.0469 -0.9353 0.0004 33 1 4.0419 1.0278 1.0209 34 1 4.0424 0.3302 -0.6167 35 1 4.0425 2.0972 -0.4020 36 1 0.3177 4.6923 0.0434 37 1 1.8870 5.5047 -0.1898 38 1 0.8065 6.4230 1.8091 39 1 0.5814 4.7878 2.4759 40 1 3.2721 6.0882 1.8531 41 1 2.0462 7.0686 3.8140 42 1 1.9591 5.4413 4.5299 43 1 6.0286 7.1789 5.4220 44 1 5.0591 8.6804 5.5952 45 1 6.3967 7.7225 7.7421 46 1 4.7252 8.3291 7.9502 47 1 4.1330 2.6159 8.2081 48 1 3.0059 5.5422 7.2260 49 1 4.3842 4.8183 6.3514 50 1 2.5365 3.4459 3.1920 51 1 4.1842 4.1041 3.0465 52 1 3.6302 2.4187 1.2567 53 1 4.0454 4.0232 0.6008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088232179.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:33 Heat of formation + Delta-G solvation = -29.791121 kcal Electronic energy + Delta-G solvation = -30107.588202 eV Core-core repulsion = 26173.790155 eV Total energy + Delta-G solvation = -3933.798047 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.62046 -38.58187 -37.60591 -35.80970 -35.47086 -33.51471 -32.20444 -31.46034 -29.97255 -29.01264 -27.75223 -27.01772 -25.29374 -24.36033 -23.67466 -23.03900 -21.62780 -20.40421 -20.10017 -19.94222 -18.55190 -16.92253 -16.65695 -16.34890 -15.73791 -15.58169 -15.31208 -14.80290 -14.73162 -14.45217 -14.19392 -14.07671 -13.93178 -13.54419 -13.43228 -13.25871 -12.98388 -12.74650 -12.62085 -12.46304 -12.26243 -12.21454 -11.91415 -11.72674 -11.57104 -11.41211 -11.28650 -11.15983 -11.03969 -10.78794 -10.61292 -10.58911 -10.49405 -10.19212 -10.04184 -9.84831 -9.68226 -9.65044 -9.21705 -8.86956 -8.68783 -8.58760 -6.81593 -5.67972 -3.06431 1.25212 2.84731 3.07373 3.40405 3.45503 3.47066 3.99822 4.32806 4.51287 4.58404 4.64669 4.78591 4.93651 4.99269 5.00907 5.07780 5.21579 5.27506 5.32654 5.35871 5.38036 5.45781 5.48815 5.55407 5.58505 5.60638 5.64132 5.65400 5.69518 5.77971 5.82646 5.84791 5.88845 5.90491 5.96603 6.00326 6.12640 6.21402 6.26980 6.33233 6.39395 6.41640 6.51224 6.55854 6.64375 6.89086 7.29584 7.31012 7.56489 7.73696 8.00324 8.06981 8.29067 9.20103 9.82533 10.48283 11.39328 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012433 B = 0.002665 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.484793 B =10503.490781 C =12010.005227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.073 4.073 3 C -0.195 4.195 4 C -0.119 4.119 5 C 0.556 3.444 6 O -0.546 6.546 7 N -0.605 5.605 8 C 0.114 3.886 9 C -0.128 4.128 10 C -0.082 4.082 11 C 0.069 3.931 12 O -0.374 6.374 13 C 0.064 3.936 14 H 0.054 0.946 15 C -0.127 4.127 16 C 0.133 3.867 17 N -0.602 5.602 18 C -0.231 4.231 19 H 0.078 0.922 20 C -0.008 4.008 21 N -0.915 5.915 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.153 3.847 27 C -0.127 4.127 28 C 0.075 3.925 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.055 0.945 32 H 0.124 0.876 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.041 0.959 42 H 0.049 0.951 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.043 0.957 46 H 0.019 0.981 47 H 0.252 0.748 48 H 0.021 0.979 49 H 0.080 0.920 50 H 0.067 0.933 51 H 0.090 0.910 52 H 0.116 0.884 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.305 -0.696 -18.629 19.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.093 4.093 3 C -0.198 4.198 4 C -0.175 4.175 5 C 0.347 3.653 6 O -0.425 6.425 7 N -0.337 5.337 8 C -0.008 4.008 9 C -0.166 4.166 10 C -0.101 4.101 11 C -0.008 4.008 12 O -0.293 6.293 13 C 0.006 3.994 14 H 0.072 0.928 15 C -0.166 4.166 16 C 0.007 3.993 17 N -0.329 5.329 18 C -0.359 4.359 19 H 0.096 0.904 20 C -0.205 4.205 21 N -0.562 5.562 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.027 3.973 27 C -0.166 4.166 28 C -0.047 4.047 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.142 0.858 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.062 0.938 46 H 0.037 0.963 47 H 0.062 0.938 48 H 0.040 0.960 49 H 0.097 0.903 50 H 0.086 0.914 51 H 0.109 0.891 52 H 0.133 0.867 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.740 -0.915 -18.901 19.508 hybrid contribution -0.096 -0.299 1.205 1.246 sum -4.835 -1.215 -17.695 18.384 Atomic orbital electron populations 1.21046 0.92022 1.01574 1.04097 1.23541 0.97070 0.96676 0.92013 1.21417 0.96468 0.93143 1.08750 1.21143 0.90979 1.03180 1.02210 1.18486 0.85443 0.83819 0.77563 1.90733 1.19115 1.85356 1.47322 1.48049 1.20700 1.08105 1.56868 1.21559 0.98887 0.83545 0.96843 1.21901 0.97105 1.01495 0.96122 1.21085 0.96412 0.96990 0.95621 1.22446 0.85763 0.98553 0.94045 1.87850 1.26192 1.83535 1.31737 1.23454 0.97165 0.95448 0.83369 0.92762 1.22828 0.97668 0.98242 0.97820 1.21582 0.97643 0.88730 0.91386 1.44367 1.51954 1.12677 1.23917 1.19038 1.29523 0.92813 0.94510 0.90398 1.24815 1.01691 0.96167 0.97793 1.69968 1.48124 1.09507 1.28584 0.86167 0.77791 0.78619 0.83379 1.21627 1.21733 1.20686 1.21639 0.93447 0.94895 0.87279 1.21940 1.03403 0.95384 0.95830 1.22808 0.83725 1.04690 0.93478 0.91216 0.89199 0.92576 0.85782 0.89958 0.91453 0.90875 0.88996 0.91549 0.90625 0.91227 0.90463 0.94083 0.93273 0.90709 0.92072 0.93834 0.96305 0.93816 0.96048 0.90252 0.91429 0.89132 0.86670 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 8.55 36.00 0.31 -1.00 16 2 C -0.07 -0.68 9.97 -36.13 -0.36 -1.04 16 3 C -0.19 -1.99 5.63 -102.85 -0.58 -2.57 16 4 C -0.12 -0.90 7.97 36.01 0.29 -0.61 16 5 C 0.56 6.99 7.22 -12.66 -0.09 6.90 16 6 O -0.55 -8.21 13.28 5.27 0.07 -8.14 16 7 N -0.60 -6.80 2.97 -174.17 -0.52 -7.32 16 8 C 0.11 1.19 6.44 -3.71 -0.02 1.16 16 9 C -0.13 -1.33 5.36 -26.61 -0.14 -1.47 16 10 C -0.08 -0.98 2.39 -90.58 -0.22 -1.20 16 11 C 0.07 1.00 5.16 37.16 0.19 1.19 16 12 O -0.37 -6.68 9.58 -35.23 -0.34 -7.02 16 13 C 0.06 1.24 3.45 -24.90 -0.09 1.15 16 14 H 0.05 0.98 7.82 -51.93 -0.41 0.57 16 15 C -0.13 -2.32 6.81 -24.58 -0.17 -2.48 16 16 C 0.13 2.78 7.23 -2.53 -0.02 2.76 16 17 N -0.60 -15.67 3.39 -170.08 -0.58 -16.24 16 18 C -0.23 -6.50 10.24 -15.06 -0.15 -6.65 16 19 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 20 C -0.01 -0.22 5.42 -17.43 -0.09 -0.32 16 21 N -0.91 -26.93 10.59 55.49 0.59 -26.34 16 22 Si 0.91 22.14 29.57 -169.99 -5.03 17.11 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.15 3.76 5.29 -3.07 -0.02 3.75 16 27 C -0.13 -1.57 5.27 -26.61 -0.14 -1.71 16 28 C 0.07 0.75 4.76 -3.71 -0.02 0.73 16 29 H 0.07 0.79 7.94 -51.93 -0.41 0.38 16 30 H 0.09 1.03 6.73 -51.93 -0.35 0.68 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.08 0.58 6.76 -51.93 -0.35 0.23 16 34 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 35 H 0.07 0.54 6.35 -51.93 -0.33 0.21 16 36 H 0.09 1.04 6.99 -51.93 -0.36 0.67 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.04 0.53 8.11 -51.93 -0.42 0.11 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 48 H 0.02 0.57 8.10 -51.93 -0.42 0.15 16 49 H 0.08 2.21 6.65 -51.93 -0.35 1.87 16 50 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 51 H 0.09 1.26 7.79 -51.93 -0.40 0.86 16 52 H 0.12 1.04 3.03 -53.56 -0.16 0.88 16 53 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 LS Contribution 404.13 15.07 6.09 6.09 Total: -1.00 -32.58 404.13 -10.46 -43.05 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -9.43 Total: 0.23 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -1.32 Total: -1.41 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.51 Total: -49.90 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.27 Total: -15.16 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.58 -10.46 -43.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088232179.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.255 kcal (2) G-P(sol) polarization free energy of solvation -32.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds