Wall clock time and date at job start Tue Mar 31 2020 20:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.32993 * 120.00102 * 2 1 4 4 C 1.50699 * 120.00276 * 179.97438 * 3 2 1 5 5 C 1.47102 * 119.99898 * 0.02562 * 3 2 1 6 6 O 1.21610 * 119.99962 * 333.32074 * 5 3 2 7 7 N 1.34779 * 120.00244 * 153.32596 * 5 3 2 8 8 C 1.46921 * 120.63083 * 175.79987 * 7 5 3 9 9 C 1.53195 * 108.77499 * 126.36893 * 8 7 5 10 10 C 1.53039 * 109.33840 * 54.61766 * 9 8 7 11 11 C 1.53001 * 109.45654 * 178.62985 * 10 9 8 12 12 O 1.42900 * 109.46899 * 184.99631 * 11 10 9 13 13 C 1.42903 * 114.00021 * 180.02562 * 12 11 10 14 14 H 1.09005 * 110.64142 * 333.13934 * 13 12 11 15 15 C 1.55161 * 110.72229 * 210.00528 * 13 12 11 16 16 C 1.54903 * 101.58050 * 206.13486 * 15 13 12 17 17 N 1.47427 * 104.83529 * 37.00862 * 16 15 13 18 18 C 1.36936 * 125.64935 * 155.83886 * 17 16 15 19 19 H 1.08000 * 120.00287 * 7.19913 * 18 17 16 20 20 C 1.38813 * 119.99775 * 187.20498 * 18 17 16 21 21 N 1.31625 * 119.99972 * 11.36672 * 20 18 17 22 22 Si 1.86802 * 119.99954 * 191.37066 * 20 18 17 23 23 H 1.48499 * 109.47308 * 84.97207 * 22 20 18 24 24 H 1.48503 * 109.46885 * 204.97496 * 22 20 18 25 25 H 1.48497 * 109.46885 * 324.96996 * 22 20 18 26 26 C 1.47021 * 108.69946 * 335.86902 * 17 16 15 27 27 C 1.53038 * 109.53918 * 298.68095 * 10 9 8 28 28 C 1.46928 * 120.62639 * 355.77476 * 7 5 3 29 29 H 1.09004 * 109.47684 * 299.99930 * 1 2 3 30 30 H 1.08999 * 109.47504 * 60.00077 * 1 2 3 31 31 H 1.09002 * 109.47103 * 180.02562 * 1 2 3 32 32 H 1.08001 * 119.99956 * 179.97438 * 2 1 3 33 33 H 1.08999 * 109.47249 * 276.94148 * 4 3 2 34 34 H 1.09003 * 109.46825 * 36.93896 * 4 3 2 35 35 H 1.09001 * 109.47789 * 156.93752 * 4 3 2 36 36 H 1.08996 * 109.59050 * 6.57611 * 8 7 5 37 37 H 1.09003 * 109.58344 * 246.15184 * 8 7 5 38 38 H 1.08997 * 109.49319 * 174.58304 * 9 8 7 39 39 H 1.08994 * 109.49489 * 294.64579 * 9 8 7 40 40 H 1.08998 * 109.46253 * 58.67504 * 10 9 8 41 41 H 1.08995 * 109.47606 * 304.99749 * 11 10 9 42 42 H 1.08998 * 109.47105 * 65.00176 * 11 10 9 43 43 H 1.09000 * 111.00261 * 324.20910 * 15 13 12 44 44 H 1.09000 * 111.00364 * 88.05833 * 15 13 12 45 45 H 1.09003 * 110.36483 * 155.84270 * 16 15 13 46 46 H 1.08998 * 110.36746 * 278.16631 * 16 15 13 47 47 H 0.97003 * 119.99609 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.88148 * 241.64030 * 26 17 16 49 49 H 1.09003 * 109.87969 * 120.48009 * 26 17 16 50 50 H 1.08997 * 109.47032 * 301.37081 * 27 10 9 51 51 H 1.09000 * 109.52171 * 181.30454 * 27 10 9 52 52 H 1.08996 * 109.59030 * 353.41738 * 28 7 5 53 53 H 1.08996 * 109.58639 * 113.84707 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 3.6789 1.1518 0.0006 5 6 1.4364 2.4257 0.0006 6 8 0.3172 2.4818 -0.4719 7 7 2.0029 3.5307 0.5246 8 6 1.3195 4.8292 0.4504 9 6 1.2246 5.4178 1.8616 10 6 2.6229 5.4778 2.4807 11 6 2.5357 6.0968 3.8772 12 8 3.8521 6.2602 4.4088 13 6 3.8835 6.8336 5.7174 14 1 3.0057 7.4579 5.8845 15 6 5.1859 7.6502 5.9278 16 6 5.3518 7.5798 7.4664 17 7 4.9053 6.2234 7.8325 18 6 5.2828 5.5345 8.9542 19 1 5.8703 6.0243 9.7166 20 6 4.9103 4.2065 9.1112 21 7 4.3935 3.5438 8.0982 22 14 5.1426 3.3601 10.7602 23 1 3.9735 3.6432 11.6310 24 1 5.2613 1.8945 10.5518 25 1 6.3777 3.8695 11.4084 26 6 3.9881 5.7325 6.7936 27 6 3.1979 4.0634 2.5843 28 6 3.3153 3.4595 1.1813 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.0469 -0.9353 0.0004 33 1 4.0419 1.0278 1.0209 34 1 4.0424 0.3302 -0.6167 35 1 4.0425 2.0972 -0.4020 36 1 0.3177 4.6923 0.0434 37 1 1.8870 5.5047 -0.1898 38 1 0.8065 6.4230 1.8091 39 1 0.5814 4.7878 2.4759 40 1 3.2721 6.0882 1.8531 41 1 2.0462 7.0686 3.8140 42 1 1.9591 5.4413 4.5299 43 1 6.0286 7.1789 5.4220 44 1 5.0591 8.6804 5.5952 45 1 6.3967 7.7225 7.7421 46 1 4.7252 8.3291 7.9502 47 1 4.1330 2.6159 8.2081 48 1 3.0059 5.5422 7.2260 49 1 4.3842 4.8183 6.3514 50 1 2.5365 3.4459 3.1920 51 1 4.1842 4.1041 3.0465 52 1 3.6302 2.4187 1.2567 53 1 4.0454 4.0232 0.6008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088232179.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:32 Heat of formation + Delta-G solvation = -48.502374 kcal Electronic energy + Delta-G solvation = -30108.399583 eV Core-core repulsion = 26173.790155 eV Total energy + Delta-G solvation = -3934.609428 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.53141 -39.97089 -38.82729 -37.31834 -36.27582 -34.70271 -34.02981 -32.35781 -30.88045 -30.70946 -29.22116 -28.41018 -26.39829 -25.99027 -24.65328 -23.95882 -22.59650 -21.98617 -21.82326 -20.98891 -19.44004 -18.91969 -17.81572 -17.58381 -17.06414 -16.61845 -16.40462 -16.14393 -15.90587 -15.82642 -15.41853 -15.10082 -14.92801 -14.80605 -14.50578 -14.37272 -14.27019 -13.94443 -13.82402 -13.56334 -13.47069 -13.29419 -13.10097 -13.03521 -12.91094 -12.73096 -12.66350 -12.57414 -12.34442 -12.19897 -12.14374 -11.93708 -11.82282 -11.70786 -11.55341 -11.32341 -11.18184 -10.78069 -10.59262 -10.31084 -10.01060 -9.56621 -8.90201 -7.82116 -5.23831 0.45479 1.44813 1.47580 1.55514 1.96724 2.20227 2.47416 2.69931 3.31908 3.51202 3.69639 3.71675 3.80182 3.91939 3.92848 4.01137 4.07834 4.12198 4.22059 4.26871 4.33566 4.35413 4.42058 4.50689 4.57615 4.58547 4.64270 4.70435 4.72409 4.78299 4.79529 4.86282 4.89133 4.91902 4.94568 4.98672 5.02732 5.03044 5.07996 5.17382 5.24346 5.27750 5.37655 5.42151 5.50076 5.52403 5.54213 5.66225 5.72500 6.20030 6.41159 6.44152 7.06855 7.14091 7.75925 8.40477 9.23256 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012433 B = 0.002665 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.484793 B =10503.490781 C =12010.005227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.071 4.071 3 C -0.211 4.211 4 C -0.116 4.116 5 C 0.545 3.455 6 O -0.580 6.580 7 N -0.605 5.605 8 C 0.113 3.887 9 C -0.119 4.119 10 C -0.075 4.075 11 C 0.064 3.936 12 O -0.382 6.382 13 C 0.077 3.923 14 H 0.074 0.926 15 C -0.112 4.112 16 C 0.125 3.875 17 N -0.626 5.626 18 C -0.246 4.246 19 H 0.085 0.915 20 C -0.066 4.066 21 N -0.945 5.945 22 Si 0.977 3.023 23 H -0.287 1.287 24 H -0.294 1.294 25 H -0.266 1.266 26 C 0.161 3.839 27 C -0.125 4.125 28 C 0.080 3.920 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.155 0.845 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.050 0.950 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.026 0.974 43 H 0.067 0.933 44 H 0.105 0.895 45 H 0.049 0.951 46 H 0.036 0.964 47 H 0.246 0.754 48 H -0.016 1.016 49 H 0.038 0.962 50 H 0.042 0.958 51 H 0.072 0.928 52 H 0.127 0.873 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.170 0.465 -19.495 19.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.091 4.091 3 C -0.213 4.213 4 C -0.172 4.172 5 C 0.337 3.663 6 O -0.462 6.462 7 N -0.337 5.337 8 C -0.010 4.010 9 C -0.157 4.157 10 C -0.093 4.093 11 C -0.012 4.012 12 O -0.301 6.301 13 C 0.018 3.982 14 H 0.092 0.908 15 C -0.150 4.150 16 C 0.000 4.000 17 N -0.353 5.353 18 C -0.375 4.375 19 H 0.102 0.898 20 C -0.260 4.260 21 N -0.593 5.593 22 Si 0.805 3.195 23 H -0.214 1.214 24 H -0.221 1.221 25 H -0.191 1.191 26 C 0.036 3.964 27 C -0.163 4.163 28 C -0.041 4.041 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.173 0.827 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.069 0.931 40 H 0.111 0.889 41 H 0.084 0.916 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.124 0.876 45 H 0.067 0.933 46 H 0.054 0.946 47 H 0.055 0.945 48 H 0.002 0.998 49 H 0.056 0.944 50 H 0.061 0.939 51 H 0.090 0.910 52 H 0.144 0.856 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.577 0.294 -19.764 20.087 hybrid contribution -0.490 -0.637 1.492 1.695 sum -4.067 -0.343 -18.272 18.722 Atomic orbital electron populations 1.20993 0.92998 1.02375 1.02245 1.23839 0.96618 0.97753 0.90854 1.21626 0.97928 0.92235 1.09559 1.21151 0.88920 1.04204 1.02915 1.19003 0.85264 0.84863 0.77174 1.90713 1.20575 1.85952 1.48963 1.48163 1.21004 1.08221 1.56318 1.21631 0.98766 0.83603 0.96950 1.21831 0.95810 1.02432 0.95632 1.21065 0.97560 0.96408 0.94305 1.22661 0.84262 0.99559 0.94761 1.87845 1.28150 1.83511 1.30556 1.23212 0.98871 0.93618 0.82484 0.90761 1.22770 0.96382 1.00378 0.95484 1.21834 0.98085 0.86437 0.93613 1.44704 1.52339 1.14578 1.23727 1.19461 1.29182 0.93302 0.95598 0.89768 1.25694 1.02047 0.97062 1.01190 1.70208 1.49339 1.09321 1.30436 0.85115 0.78121 0.77048 0.79201 1.21425 1.22093 1.19091 1.21397 0.91019 0.95667 0.88365 1.21866 1.01715 0.95823 0.96944 1.22877 0.83574 1.05653 0.91995 0.93256 0.90988 0.90359 0.82735 0.89463 0.89564 0.90549 0.90090 0.89387 0.88368 0.93077 0.88918 0.91645 0.95591 0.91436 0.87621 0.93252 0.94632 0.94523 0.99763 0.94399 0.93910 0.90951 0.85579 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 8.55 71.23 0.61 -2.00 16 2 C -0.07 -1.26 9.97 24.52 0.24 -1.01 16 3 C -0.21 -4.13 5.63 -18.70 -0.11 -4.24 16 4 C -0.12 -1.54 7.97 71.24 0.57 -0.97 16 5 C 0.55 13.78 7.22 86.57 0.63 14.41 16 6 O -0.58 -18.05 13.28 -4.06 -0.05 -18.10 16 7 N -0.61 -13.31 2.97 -823.19 -2.45 -15.76 16 8 C 0.11 2.23 6.44 86.36 0.56 2.79 16 9 C -0.12 -2.35 5.36 30.67 0.16 -2.19 16 10 C -0.07 -1.70 2.39 -10.77 -0.03 -1.73 16 11 C 0.06 1.81 5.16 71.98 0.37 2.18 16 12 O -0.38 -13.36 9.58 -148.98 -1.43 -14.79 16 13 C 0.08 2.90 3.45 31.78 0.11 3.01 16 14 H 0.07 2.52 7.82 -2.38 -0.02 2.50 16 15 C -0.11 -3.79 6.81 31.99 0.22 -3.58 16 16 C 0.12 5.04 7.23 86.85 0.63 5.67 16 17 N -0.63 -32.95 3.39 -692.00 -2.35 -35.30 16 18 C -0.25 -14.06 10.24 84.03 0.86 -13.20 16 19 H 0.08 4.55 7.85 -2.91 -0.02 4.53 16 20 C -0.07 -3.85 5.42 84.86 0.46 -3.39 16 21 N -0.94 -57.91 10.59 21.65 0.23 -57.68 16 22 Si 0.98 46.21 29.57 68.60 2.03 48.24 16 23 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 24 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 25 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 26 C 0.16 8.23 5.29 86.73 0.46 8.69 16 27 C -0.13 -3.13 5.27 30.67 0.16 -2.97 16 28 C 0.08 1.53 4.76 86.36 0.41 1.94 16 29 H 0.05 1.18 7.94 -2.38 -0.02 1.16 16 30 H 0.07 1.72 6.73 -2.39 -0.02 1.70 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 33 H 0.09 1.08 6.76 -2.39 -0.02 1.07 16 34 H 0.09 0.84 8.12 -2.39 -0.02 0.82 16 35 H 0.08 0.96 6.35 -2.39 -0.02 0.95 16 36 H 0.08 1.82 6.99 -2.39 -0.02 1.81 16 37 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.07 1.55 8.11 -2.39 -0.02 1.53 16 42 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 45 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 48 H -0.02 -0.89 8.10 -2.39 -0.02 -0.91 16 49 H 0.04 2.23 6.65 -2.39 -0.02 2.22 16 50 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.07 2.08 7.79 -2.39 -0.02 2.06 16 52 H 0.13 2.16 3.03 -3.92 -0.01 2.15 16 53 H 0.09 1.37 8.07 -2.39 -0.02 1.36 16 Total: -1.00 -74.27 404.13 3.16 -71.12 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.86 Total: 18.85 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: 6.31 Total: 3.41 kcal Atomic # 7 Polarization: -104.17 SS G_CDS: -4.57 Total: -108.73 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -1.48 Total: -32.89 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -74.27 3.16 -71.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088232179.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.613 kcal (2) G-P(sol) polarization free energy of solvation -74.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds