Wall clock time and date at job start Tue Mar 31 2020 21:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47258 * 2 1 4 4 C 1.53002 * 109.46649 * 119.99372 * 2 1 3 5 5 H 1.09002 * 113.08039 * 197.43202 * 4 2 1 6 6 N 1.47753 * 113.81598 * 329.32721 * 4 2 1 7 7 C 1.34775 * 134.41488 * 270.24039 * 6 4 2 8 8 O 1.21286 * 119.99524 * 359.97438 * 7 6 4 9 9 C 1.50693 * 120.00150 * 179.97438 * 7 6 4 10 10 C 1.53785 * 113.61497 * 277.49543 * 9 7 6 11 11 C 1.53774 * 87.08306 * 220.01907 * 10 9 7 12 12 C 1.53781 * 113.61463 * 179.97438 * 9 7 6 13 13 C 1.47741 * 91.16705 * 90.21543 * 6 4 2 14 14 C 1.53085 * 113.80997 * 65.53857 * 4 2 1 15 15 C 1.53090 * 115.49145 * 151.94980 * 14 4 2 16 16 C 1.54487 * 106.23887 * 230.02315 * 15 14 4 17 17 H 1.09008 * 110.47900 * 95.16848 * 16 15 14 18 18 O 1.42898 * 110.48601 * 217.66780 * 16 15 14 19 19 C 1.54964 * 104.34959 * 336.42161 * 16 15 14 20 20 H 1.08996 * 110.73280 * 279.22414 * 19 16 15 21 21 N 1.46500 * 110.73551 * 155.90903 * 19 16 15 22 22 C 1.36943 * 119.99878 * 86.45323 * 21 19 16 23 23 H 1.07999 * 119.99219 * 0.02562 * 22 21 19 24 24 C 1.38808 * 119.99823 * 179.97438 * 22 21 19 25 25 N 1.31618 * 119.99583 * 180.02562 * 24 22 21 26 26 Si 1.86795 * 120.00294 * 0.02562 * 24 22 21 27 27 H 1.48496 * 109.47621 * 89.99690 * 26 24 22 28 28 H 1.48500 * 109.47056 * 209.99910 * 26 24 22 29 29 H 1.48500 * 109.47043 * 329.99454 * 26 24 22 30 30 C 1.53476 * 115.25844 * 25.56571 * 14 4 2 31 31 H 1.08998 * 109.47581 * 291.66524 * 1 2 3 32 32 H 1.09002 * 109.46811 * 51.65945 * 1 2 3 33 33 H 1.08996 * 109.47195 * 171.65455 * 1 2 3 34 34 H 1.08996 * 109.47518 * 239.99303 * 2 1 3 35 35 H 1.08996 * 109.47246 * 178.75174 * 3 2 1 36 36 H 1.09008 * 109.46975 * 298.74738 * 3 2 1 37 37 H 1.09001 * 109.47527 * 58.74469 * 3 2 1 38 38 H 1.08998 * 112.84829 * 48.80505 * 9 7 6 39 39 H 1.08996 * 113.61479 * 334.57251 * 10 9 7 40 40 H 1.09002 * 113.60752 * 105.46889 * 10 9 7 41 41 H 1.09010 * 113.61255 * 270.88576 * 11 10 9 42 42 H 1.08994 * 113.61609 * 139.98321 * 11 10 9 43 43 H 1.08991 * 113.61566 * 254.53040 * 12 9 7 44 44 H 1.09003 * 113.61299 * 25.43838 * 12 9 7 45 45 H 1.09004 * 113.81985 * 269.77759 * 13 6 4 46 46 H 1.09007 * 113.81040 * 138.24648 * 13 6 4 47 47 H 1.08997 * 110.09987 * 110.83324 * 15 14 4 48 48 H 1.09003 * 110.15219 * 349.24868 * 15 14 4 49 49 H 0.96693 * 114.00174 * 178.17910 * 18 16 15 50 50 H 0.96999 * 120.00339 * 266.46083 * 21 19 16 51 51 H 0.96999 * 119.99668 * 180.02562 * 25 24 22 52 52 H 1.08994 * 110.52763 * 272.03202 * 30 14 4 53 53 H 1.08999 * 110.53052 * 34.65164 * 30 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7211 1.2494 5 1 3.0843 -0.5030 1.4723 6 7 1.1426 -0.5988 2.4168 7 6 1.0302 0.2804 3.4321 8 8 1.7873 1.2254 3.5024 9 6 -0.0359 0.0894 4.4798 10 6 -1.4149 0.6256 4.0604 11 6 -1.5678 1.1362 5.5028 12 6 -0.0314 1.1755 5.5684 13 6 0.4174 -1.8252 2.0260 14 6 1.6991 -2.2132 1.2841 15 6 2.6741 -3.0936 2.0701 16 6 3.0385 -4.2718 1.1397 17 1 3.9648 -4.0628 0.6045 18 8 3.1578 -5.4826 1.8893 19 6 1.8493 -4.3618 0.1502 20 1 1.0118 -4.8945 0.6008 21 7 2.2622 -5.0043 -1.0999 22 6 2.2316 -6.3689 -1.2112 23 1 1.9026 -6.9712 -0.3773 24 6 2.6223 -6.9775 -2.3959 25 7 2.5924 -8.2890 -2.5029 26 14 3.1907 -5.9355 -3.8382 27 1 4.6584 -5.7276 -3.7509 28 1 2.8638 -6.6297 -5.1096 29 1 2.5014 -4.6206 -3.8009 30 6 1.4882 -2.8689 -0.0874 31 1 -0.3634 0.3794 0.9550 32 1 -0.3633 0.6375 -0.8061 33 1 -0.3633 -1.0167 -0.1491 34 1 1.8934 -0.5139 -0.8899 35 1 3.1298 1.4425 0.0224 36 1 1.6951 1.9498 -0.9011 37 1 1.6585 1.9628 0.8785 38 1 -0.0627 -0.9256 4.8762 39 1 -1.3662 1.4222 3.3180 40 1 -2.1259 -0.1573 3.7966 41 1 -2.0149 0.4074 6.1789 42 1 -2.0332 2.1194 5.5709 43 1 0.3739 0.8366 6.5217 44 1 0.3955 2.1226 5.2385 45 1 -0.4334 -1.6432 1.3693 46 1 0.1780 -2.4807 2.8635 47 1 2.1958 -3.4658 2.9761 48 1 3.5696 -2.5270 2.3254 49 1 3.3582 -6.2604 1.3509 50 1 2.5574 -4.4632 -1.8489 51 1 2.8658 -8.7144 -3.3307 52 1 0.4489 -2.7725 -0.4014 53 1 2.1532 -2.4262 -0.8290 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093420717.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:56 Heat of formation + Delta-G solvation = -42.107785 kcal Electronic energy + Delta-G solvation = -31357.539857 eV Core-core repulsion = 27423.207719 eV Total energy + Delta-G solvation = -3934.332138 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.58691 -40.54083 -38.82569 -37.88036 -36.04665 -35.26167 -34.54002 -32.85544 -29.99802 -29.36842 -28.30848 -27.37858 -26.88750 -26.52764 -25.40951 -24.12843 -22.04925 -21.47922 -20.78942 -20.02115 -19.57942 -19.06846 -18.29759 -18.15546 -17.31137 -16.96459 -16.55583 -16.26126 -16.24249 -15.56995 -15.31135 -14.97320 -14.89257 -14.67581 -14.50349 -14.33192 -14.03333 -13.78933 -13.68983 -13.42895 -13.30736 -13.13138 -12.98932 -12.95420 -12.78505 -12.69945 -12.44067 -12.32831 -12.19755 -12.03901 -11.84453 -11.78032 -11.71977 -11.62250 -11.58796 -11.44224 -11.29412 -11.22841 -11.11548 -10.62533 -10.50425 -9.58761 -9.20958 -7.98483 -5.31955 1.41721 1.43996 1.51489 1.63554 1.83660 2.51842 3.14136 3.16416 3.31930 3.46088 3.59762 3.63328 3.66904 3.80435 3.84383 3.91375 3.94752 3.98841 4.05662 4.14372 4.30837 4.40645 4.44976 4.47974 4.57419 4.61660 4.64230 4.71919 4.74871 4.78078 4.80604 4.82202 4.85519 4.92761 4.97022 4.99377 4.99642 5.03077 5.05774 5.09164 5.17858 5.18499 5.22402 5.27280 5.35840 5.43908 5.46599 5.53145 5.83271 6.24435 6.77741 6.84273 7.12007 7.19637 7.87976 8.06387 9.22229 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017801 B = 0.003089 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.606706 B = 9061.547210 C = 9745.082843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.139 4.139 4 C 0.149 3.851 5 H 0.073 0.927 6 N -0.626 5.626 7 C 0.537 3.463 8 O -0.589 6.589 9 C -0.135 4.135 10 C -0.115 4.115 11 C -0.130 4.130 12 C -0.126 4.126 13 C 0.109 3.891 14 C -0.076 4.076 15 C -0.081 4.081 16 C 0.077 3.923 17 H 0.045 0.955 18 O -0.584 6.584 19 C 0.148 3.852 20 H 0.060 0.940 21 N -0.745 5.745 22 C -0.227 4.227 23 H 0.065 0.935 24 C -0.060 4.060 25 N -0.982 5.982 26 Si 0.947 3.053 27 H -0.284 1.284 28 H -0.303 1.303 29 H -0.245 1.245 30 C -0.106 4.106 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.035 0.965 38 H 0.126 0.874 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.120 0.880 46 H 0.095 0.905 47 H 0.077 0.923 48 H 0.067 0.933 49 H 0.384 0.616 50 H 0.366 0.634 51 H 0.256 0.744 52 H 0.094 0.906 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.116 20.783 11.147 25.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 C -0.196 4.196 4 C 0.045 3.955 5 H 0.091 0.909 6 N -0.359 5.359 7 C 0.329 3.671 8 O -0.470 6.470 9 C -0.156 4.156 10 C -0.153 4.153 11 C -0.167 4.167 12 C -0.164 4.164 13 C -0.012 4.012 14 C -0.077 4.077 15 C -0.119 4.119 16 C 0.016 3.984 17 H 0.063 0.937 18 O -0.391 6.391 19 C 0.039 3.961 20 H 0.078 0.922 21 N -0.388 5.388 22 C -0.358 4.358 23 H 0.083 0.917 24 C -0.252 4.252 25 N -0.632 5.632 26 Si 0.776 3.224 27 H -0.211 1.211 28 H -0.230 1.230 29 H -0.170 1.170 30 C -0.144 4.144 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.116 0.884 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.144 0.856 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.119 0.881 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.137 0.863 46 H 0.113 0.887 47 H 0.096 0.904 48 H 0.085 0.915 49 H 0.233 0.767 50 H 0.200 0.800 51 H 0.065 0.935 52 H 0.112 0.888 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.921 21.612 11.916 26.242 hybrid contribution 1.168 -0.410 -1.518 1.959 sum -7.753 21.202 10.398 24.854 Atomic orbital electron populations 1.22080 0.93818 1.02803 1.01790 1.21320 0.97455 0.96004 0.96723 1.21739 1.00650 0.95889 1.01331 1.22786 0.94568 0.92511 0.85605 0.90880 1.50229 1.35497 1.26584 1.23602 1.20763 0.84480 0.79857 0.82031 1.90654 1.46375 1.32380 1.77595 1.22870 0.94633 1.02493 0.95570 1.22772 0.93722 1.00930 0.97888 1.22820 0.94904 1.02604 0.96383 1.22817 0.97784 0.98013 0.97750 1.23823 0.95610 0.82989 0.98794 1.22112 0.96475 0.93159 0.95999 1.21649 0.98694 0.93654 0.97858 1.23527 0.98170 0.84449 0.92260 0.93683 1.86236 1.94460 1.19061 1.39326 1.22115 0.94903 0.93075 0.86011 0.92247 1.42743 1.80015 1.02945 1.13066 1.19028 1.35379 0.82807 0.98562 0.91746 1.25439 1.02706 0.96334 1.00741 1.69875 1.56109 1.09673 1.27555 0.85519 0.78323 0.79405 0.79194 1.21078 1.23006 1.16973 1.22466 1.03395 0.93018 0.95538 0.93072 0.92051 0.90585 0.88403 0.93193 0.91407 0.94553 0.85629 0.90980 0.88823 0.88138 0.90517 0.90644 0.91127 0.86258 0.88700 0.90403 0.91481 0.76696 0.80010 0.93544 0.88784 0.90081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 7.51 71.98 0.54 -1.71 16 2 C -0.10 -1.72 2.51 -10.79 -0.03 -1.75 16 3 C -0.14 -2.73 9.17 71.98 0.66 -2.07 16 4 C 0.15 3.09 3.85 44.78 0.17 3.26 16 5 H 0.07 1.78 7.84 -2.39 -0.02 1.76 16 6 N -0.63 -12.63 2.34 -825.58 -1.93 -14.56 16 7 C 0.54 12.70 7.55 87.66 0.66 13.36 16 8 O -0.59 -18.91 16.63 -3.05 -0.05 -18.96 16 9 C -0.13 -2.23 3.89 -11.01 -0.04 -2.27 16 10 C -0.12 -1.45 7.63 31.12 0.24 -1.22 16 11 C -0.13 -1.45 8.08 31.13 0.25 -1.20 16 12 C -0.13 -2.08 7.41 31.14 0.23 -1.85 16 13 C 0.11 1.76 6.92 86.17 0.60 2.35 16 14 C -0.08 -1.54 1.05 -51.89 -0.05 -1.60 16 15 C -0.08 -2.03 6.08 31.13 0.19 -1.84 16 16 C 0.08 2.46 3.92 31.77 0.12 2.59 16 17 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 18 O -0.58 -21.20 13.38 -148.98 -1.99 -23.19 16 19 C 0.15 4.78 3.27 46.50 0.15 4.93 16 20 H 0.06 2.09 8.12 -2.39 -0.02 2.07 16 21 N -0.75 -30.52 5.06 -315.84 -1.60 -32.12 16 22 C -0.23 -11.70 10.04 84.03 0.84 -10.86 16 23 H 0.06 3.65 7.96 -2.91 -0.02 3.62 16 24 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 25 N -0.98 -60.14 13.97 21.65 0.30 -59.84 16 26 Si 0.95 42.77 27.74 68.60 1.90 44.67 16 27 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 28 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 29 H -0.25 -9.69 6.52 99.48 0.65 -9.04 16 30 C -0.11 -2.40 4.52 31.59 0.14 -2.26 16 31 H 0.05 0.85 6.73 -2.39 -0.02 0.83 16 32 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 33 H 0.08 1.00 4.56 -2.39 -0.01 0.99 16 34 H 0.10 1.65 6.53 -2.39 -0.02 1.63 16 35 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.07 1.08 8.09 -2.39 -0.02 1.06 16 40 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.07 1.50 7.43 -2.39 -0.02 1.48 16 45 H 0.12 1.50 4.92 -2.38 -0.01 1.49 16 46 H 0.09 1.35 7.85 -2.38 -0.02 1.33 16 47 H 0.08 1.97 7.66 -2.39 -0.02 1.95 16 48 H 0.07 1.70 7.74 -2.39 -0.02 1.68 16 49 H 0.38 14.54 8.58 -74.06 -0.64 13.91 16 50 H 0.37 14.42 5.59 -92.71 -0.52 13.91 16 51 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 52 H 0.09 1.82 6.47 -2.39 -0.02 1.81 16 53 H 0.08 1.80 6.71 -2.39 -0.02 1.79 16 Total: -1.00 -68.90 401.24 1.48 -67.41 By element: Atomic # 1 Polarization: 41.86 SS G_CDS: -0.30 Total: 41.57 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 5.15 Total: -4.98 kcal Atomic # 7 Polarization: -103.30 SS G_CDS: -3.22 Total: -106.52 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: -2.04 Total: -42.15 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.90 Total: 44.67 kcal Total: -68.90 1.48 -67.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093420717.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.304 kcal (2) G-P(sol) polarization free energy of solvation -68.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds