Wall clock time and date at job start Tue Mar 31 2020 21:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47099 * 2 1 4 4 C 1.52996 * 109.47298 * 239.99450 * 2 1 3 5 5 H 1.08999 * 112.78092 * 57.25855 * 4 2 1 6 6 N 1.47319 * 113.52345 * 188.17233 * 4 2 1 7 7 C 1.34779 * 135.90484 * 320.65844 * 6 4 2 8 8 O 1.21281 * 119.99757 * 4.58232 * 7 6 4 9 9 C 1.50694 * 120.00256 * 184.59077 * 7 6 4 10 10 C 1.53002 * 109.47291 * 179.97438 * 9 7 6 11 11 C 1.52996 * 117.49767 * 243.61627 * 10 9 7 12 12 C 1.52997 * 60.00244 * 252.50774 * 11 10 9 13 13 C 1.47317 * 88.19779 * 140.67511 * 6 4 2 14 14 C 1.52153 * 113.52901 * 286.24449 * 4 2 1 15 15 C 1.52986 * 116.68310 * 102.86181 * 14 4 2 16 16 C 1.54186 * 106.19950 * 206.72881 * 15 14 4 17 17 H 1.08995 * 110.03580 * 118.31778 * 16 15 14 18 18 O 1.42902 * 110.03297 * 239.69989 * 16 15 14 19 19 C 1.54364 * 106.59088 * 359.03374 * 16 15 14 20 20 H 1.09008 * 110.44986 * 264.52459 * 19 16 15 21 21 N 1.46501 * 110.45066 * 142.10777 * 19 16 15 22 22 C 1.36934 * 120.00262 * 86.45364 * 21 19 16 23 23 H 1.08003 * 119.99960 * 359.97438 * 22 21 19 24 24 C 1.38811 * 120.00211 * 180.02562 * 22 21 19 25 25 N 1.31620 * 119.99901 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00178 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47114 * 59.99715 * 26 24 22 28 28 H 1.48496 * 109.47122 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47029 * 299.99528 * 26 24 22 30 30 C 1.53617 * 116.28138 * 336.85633 * 14 4 2 31 31 H 1.09009 * 109.46980 * 60.00493 * 1 2 3 32 32 H 1.09002 * 109.47618 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47862 * 300.00230 * 1 2 3 34 34 H 1.09002 * 109.46586 * 119.99583 * 2 1 3 35 35 H 1.09004 * 109.47134 * 26.58016 * 3 2 1 36 36 H 1.09006 * 109.47041 * 146.57778 * 3 2 1 37 37 H 1.08999 * 109.47168 * 266.57639 * 3 2 1 38 38 H 1.09008 * 109.46928 * 299.99624 * 9 7 6 39 39 H 1.08997 * 109.47316 * 59.99169 * 9 7 6 40 40 H 1.08998 * 115.54681 * 29.33027 * 10 9 7 41 41 H 1.08991 * 117.50075 * 0.02562 * 11 10 9 42 42 H 1.09010 * 117.49267 * 145.02206 * 11 10 9 43 43 H 1.08995 * 117.50610 * 252.51589 * 12 11 10 44 44 H 1.08998 * 117.49753 * 107.48766 * 12 11 10 45 45 H 1.09001 * 113.52323 * 88.70318 * 13 6 4 46 46 H 1.08994 * 113.52694 * 219.33050 * 13 6 4 47 47 H 1.08994 * 110.11462 * 325.91402 * 15 14 4 48 48 H 1.09009 * 110.10832 * 87.54807 * 15 14 4 49 49 H 0.96700 * 113.99862 * 179.97438 * 18 16 15 50 50 H 0.96998 * 119.99802 * 266.45125 * 21 19 16 51 51 H 0.97001 * 120.00252 * 180.02562 * 25 24 22 52 52 H 1.09002 * 110.77803 * 285.97341 * 30 14 4 53 53 H 1.08999 * 110.78126 * 49.41847 * 30 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 1 1.6683 -0.2789 -2.1733 6 7 3.4966 -0.9419 -1.2472 7 6 4.5818 -0.2375 -0.8695 8 8 4.4472 0.8363 -0.3220 9 6 5.9622 -0.7839 -1.1278 10 6 7.0076 0.2041 -0.6063 11 6 7.9472 0.8443 -1.6301 12 6 8.4757 -0.2222 -0.6688 13 6 3.2496 -2.2684 -1.8385 14 6 1.8746 -2.2326 -1.1879 15 6 0.7187 -2.8303 -1.9924 16 6 0.3339 -4.1435 -1.2819 17 1 -0.6956 -4.0890 -0.9282 18 8 0.4858 -5.2471 -2.1769 19 6 1.2968 -4.2956 -0.0850 20 1 2.1434 -4.9270 -0.3550 21 7 0.5918 -4.8538 1.0715 22 6 0.4753 -6.2109 1.2128 23 1 0.9028 -6.8697 0.4714 24 6 -0.1933 -6.7398 2.3083 25 7 -0.7147 -5.9370 3.2116 26 14 -0.3516 -8.5910 2.5014 27 1 1.0014 -9.1981 2.5793 28 1 -1.1031 -8.8965 3.7452 29 1 -1.0786 -9.1501 1.3334 30 6 1.7702 -2.8492 0.2152 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3635 0.5138 0.8899 34 1 1.8932 -0.5138 0.8901 35 1 1.2946 2.0914 0.4598 36 1 2.9698 1.4992 0.5661 37 1 2.2189 1.7646 -1.0258 38 1 6.0767 -1.7389 -0.6149 39 1 6.1014 -0.9279 -2.1992 40 1 6.6963 0.8138 0.2419 41 1 7.8204 0.5619 -2.6751 42 1 8.2541 1.8756 -1.4556 43 1 9.1302 0.1073 0.1381 44 1 8.6968 -1.2065 -1.0814 45 1 3.2157 -2.2596 -2.9280 46 1 3.8984 -3.0492 -1.4419 47 1 -0.1286 -2.1447 -1.9971 48 1 1.0400 -3.0369 -3.0133 49 1 0.2591 -6.1029 -1.7881 50 1 0.2075 -4.2622 1.7372 51 1 -1.1816 -6.3066 3.9773 52 1 2.7422 -2.8548 0.7084 53 1 1.0328 -2.3180 0.8171 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093420787.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:12 Heat of formation + Delta-G solvation = -39.547555 kcal Electronic energy + Delta-G solvation = -31028.282417 eV Core-core repulsion = 27094.061300 eV Total energy + Delta-G solvation = -3934.221118 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.44232 -39.99558 -38.52489 -37.66601 -35.99242 -35.63245 -34.60195 -32.52259 -30.96065 -29.02753 -28.83032 -27.76331 -26.77210 -25.92863 -24.48091 -23.22800 -22.02952 -21.73032 -21.02566 -20.21328 -19.52615 -18.89884 -18.24896 -17.98321 -17.21410 -16.93963 -16.62000 -16.05823 -15.91939 -15.58412 -15.27419 -15.14178 -14.95079 -14.84427 -14.50614 -14.34256 -13.86030 -13.57867 -13.50680 -13.43171 -13.24716 -13.17921 -12.90998 -12.85747 -12.63681 -12.51617 -12.40241 -12.33038 -12.26559 -12.18227 -12.01147 -11.78284 -11.72042 -11.62772 -11.44415 -11.21603 -11.10669 -10.90709 -10.81037 -10.58615 -10.33867 -9.60993 -8.95576 -7.92917 -5.21577 1.50037 1.51685 1.57427 1.70990 1.85351 2.56981 2.91016 3.22626 3.36510 3.38537 3.48511 3.73811 3.78357 3.80100 3.89711 4.02965 4.05636 4.06932 4.15633 4.22376 4.37134 4.41667 4.47997 4.51318 4.54747 4.59892 4.61140 4.67665 4.72759 4.75534 4.79782 4.81526 4.85376 4.92910 4.97143 5.02698 5.04999 5.05712 5.08713 5.22903 5.24315 5.26776 5.31339 5.35266 5.36029 5.43449 5.52865 5.53849 5.61203 6.28073 6.83948 6.91118 7.30606 7.35219 8.10638 8.33329 9.30192 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012557 B = 0.003067 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.294540 B = 9127.160505 C = 9833.406974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 C -0.134 4.134 4 C 0.153 3.847 5 H 0.109 0.891 6 N -0.642 5.642 7 C 0.533 3.467 8 O -0.564 6.564 9 C -0.097 4.097 10 C -0.157 4.157 11 C -0.176 4.176 12 C -0.170 4.170 13 C 0.116 3.884 14 C -0.082 4.082 15 C -0.087 4.087 16 C 0.085 3.915 17 H 0.035 0.965 18 O -0.577 6.577 19 C 0.146 3.854 20 H 0.054 0.946 21 N -0.733 5.733 22 C -0.239 4.239 23 H 0.082 0.918 24 C -0.073 4.073 25 N -0.969 5.969 26 Si 0.968 3.032 27 H -0.280 1.280 28 H -0.302 1.302 29 H -0.274 1.274 30 C -0.090 4.090 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.045 0.955 36 H 0.063 0.937 37 H 0.042 0.958 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.108 0.892 45 H 0.115 0.885 46 H 0.086 0.914 47 H 0.088 0.912 48 H 0.094 0.906 49 H 0.383 0.617 50 H 0.372 0.628 51 H 0.249 0.751 52 H 0.056 0.944 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.712 11.774 -14.622 22.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.114 4.114 3 C -0.191 4.191 4 C 0.050 3.950 5 H 0.127 0.873 6 N -0.376 5.376 7 C 0.325 3.675 8 O -0.444 6.444 9 C -0.136 4.136 10 C -0.176 4.176 11 C -0.213 4.213 12 C -0.207 4.207 13 C -0.006 4.006 14 C -0.083 4.083 15 C -0.125 4.125 16 C 0.023 3.977 17 H 0.054 0.946 18 O -0.384 6.384 19 C 0.036 3.964 20 H 0.072 0.928 21 N -0.372 5.372 22 C -0.371 4.371 23 H 0.100 0.900 24 C -0.266 4.266 25 N -0.620 5.620 26 Si 0.798 3.202 27 H -0.206 1.206 28 H -0.229 1.229 29 H -0.200 1.200 30 C -0.128 4.128 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.121 0.879 39 H 0.130 0.870 40 H 0.109 0.891 41 H 0.123 0.877 42 H 0.111 0.889 43 H 0.116 0.884 44 H 0.126 0.874 45 H 0.133 0.867 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.112 0.888 49 H 0.231 0.769 50 H 0.204 0.796 51 H 0.058 0.942 52 H 0.075 0.925 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.073 12.742 -14.705 22.899 hybrid contribution -0.725 -1.226 1.503 2.071 sum 11.348 11.516 -13.202 20.874 Atomic orbital electron populations 1.21819 0.93589 1.02068 1.02455 1.21204 0.96510 0.96516 0.97132 1.21990 1.00899 0.94776 1.01437 1.22681 0.79295 0.94265 0.98754 0.87325 1.49882 1.06052 1.19656 1.62047 1.20629 0.85881 0.83773 0.77213 1.90615 1.86283 1.23488 1.44050 1.21163 0.88914 0.99532 1.03999 1.21963 0.91048 1.02230 1.02372 1.23102 1.03283 0.98467 0.96440 1.23077 0.94866 1.00239 1.02481 1.23084 0.93939 0.83731 0.99802 1.21839 0.95973 0.94546 0.95928 1.21755 0.97518 0.93725 0.99520 1.23301 0.97766 0.86815 0.89829 0.94648 1.86284 1.91404 1.18559 1.42146 1.22013 0.93428 0.93372 0.87544 0.92775 1.42633 1.65657 1.03705 1.25202 1.19594 1.27874 0.84434 1.05182 0.90022 1.25519 1.01768 1.01618 0.97681 1.69809 1.43270 1.35061 1.13829 0.85286 0.77517 0.80744 0.76654 1.20631 1.22896 1.20012 1.22140 1.00735 0.94716 0.95185 0.91095 0.92684 0.92644 0.92890 0.93583 0.91807 0.93891 0.87914 0.86988 0.89062 0.87744 0.88928 0.88385 0.87386 0.86681 0.89530 0.89383 0.88788 0.76907 0.79642 0.94195 0.92535 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.68 71.98 0.62 -2.56 16 2 C -0.09 -2.36 2.13 -10.80 -0.02 -2.38 16 3 C -0.13 -3.54 8.00 71.98 0.58 -2.97 16 4 C 0.15 3.30 2.84 42.17 0.12 3.42 16 5 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 6 N -0.64 -13.99 3.56 -834.41 -2.97 -16.95 16 7 C 0.53 13.00 8.00 87.65 0.70 13.70 16 8 O -0.56 -17.44 11.67 -3.03 -0.04 -17.47 16 9 C -0.10 -1.71 5.81 29.85 0.17 -1.54 16 10 C -0.16 -2.99 5.41 -10.79 -0.06 -3.05 16 11 C -0.18 -2.68 10.18 30.59 0.31 -2.37 16 12 C -0.17 -2.44 10.25 30.59 0.31 -2.12 16 13 C 0.12 2.10 7.67 83.56 0.64 2.74 16 14 C -0.08 -1.82 0.62 -52.53 -0.03 -1.85 16 15 C -0.09 -1.98 6.09 30.99 0.19 -1.79 16 16 C 0.08 2.67 4.01 31.46 0.13 2.79 16 17 H 0.04 1.30 8.04 -2.39 -0.02 1.28 16 18 O -0.58 -18.21 13.23 -148.98 -1.97 -20.18 16 19 C 0.15 5.19 3.25 46.18 0.15 5.34 16 20 H 0.05 2.01 8.05 -2.38 -0.02 1.99 16 21 N -0.73 -34.36 5.16 -317.31 -1.64 -35.99 16 22 C -0.24 -12.33 9.97 84.03 0.84 -11.49 16 23 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16 24 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 25 N -0.97 -57.70 13.06 21.65 0.28 -57.42 16 26 Si 0.97 44.34 29.55 68.60 2.03 46.37 16 27 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 28 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 29 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 30 C -0.09 -2.70 4.68 31.53 0.15 -2.55 16 31 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.05 1.34 6.47 -2.39 -0.02 1.32 16 33 H 0.05 1.26 8.12 -2.39 -0.02 1.24 16 34 H 0.05 1.59 6.57 -2.39 -0.02 1.57 16 35 H 0.05 1.11 7.77 -2.38 -0.02 1.10 16 36 H 0.06 2.02 5.48 -2.38 -0.01 2.01 16 37 H 0.04 1.12 7.72 -2.39 -0.02 1.10 16 38 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.11 1.49 7.87 -2.39 -0.02 1.47 16 40 H 0.09 2.23 7.30 -2.39 -0.02 2.21 16 41 H 0.10 1.32 8.03 -2.39 -0.02 1.30 16 42 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 43 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.12 1.50 8.01 -2.39 -0.02 1.48 16 46 H 0.09 1.54 8.13 -2.39 -0.02 1.52 16 47 H 0.09 1.82 7.74 -2.39 -0.02 1.80 16 48 H 0.09 1.88 7.69 -2.38 -0.02 1.86 16 49 H 0.38 11.78 9.11 -74.06 -0.67 11.10 16 50 H 0.37 19.22 7.71 -92.71 -0.72 18.50 16 51 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 52 H 0.06 1.79 8.06 -2.39 -0.02 1.77 16 53 H 0.07 2.27 5.58 -2.39 -0.01 2.26 16 Total: -1.00 -65.38 409.07 0.48 -64.90 By element: Atomic # 1 Polarization: 47.46 SS G_CDS: -0.48 Total: 46.98 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: 5.26 Total: -10.23 kcal Atomic # 7 Polarization: -106.05 SS G_CDS: -4.32 Total: -110.37 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -2.01 Total: -37.66 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -65.38 0.48 -64.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093420787.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.349 kcal (2) G-P(sol) polarization free energy of solvation -65.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds