Wall clock time and date at job start Tue Mar 31 2020 21:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47162 * 2 1 4 4 C 1.53001 * 109.46687 * 119.99280 * 2 1 3 5 5 H 1.08995 * 113.07939 * 43.78800 * 4 2 1 6 6 N 1.47755 * 113.81542 * 271.89144 * 4 2 1 7 7 C 1.34776 * 134.41398 * 89.74238 * 6 4 2 8 8 O 1.21277 * 120.00002 * 0.06057 * 7 6 4 9 9 C 1.50700 * 119.99602 * 180.02562 * 7 6 4 10 10 C 1.53003 * 109.46895 * 180.02562 * 9 7 6 11 11 C 1.52998 * 117.50168 * 243.62514 * 10 9 7 12 12 C 1.52992 * 117.49940 * 175.00134 * 10 9 7 13 13 C 1.47751 * 91.16718 * 269.78276 * 6 4 2 14 14 C 1.53083 * 113.81161 * 175.67907 * 4 2 1 15 15 C 1.53477 * 115.25827 * 207.73660 * 14 4 2 16 16 C 1.55228 * 104.04079 * 153.35215 * 15 14 4 17 17 H 1.09000 * 110.67828 * 81.23220 * 16 15 14 18 18 O 1.42897 * 110.85178 * 204.58909 * 16 15 14 19 19 C 1.54962 * 102.80501 * 322.95113 * 16 15 14 20 20 H 1.08999 * 110.47807 * 278.57787 * 19 16 15 21 21 N 1.46498 * 110.47770 * 156.08522 * 19 16 15 22 22 C 1.36931 * 120.00160 * 88.22228 * 21 19 16 23 23 H 1.08004 * 120.00069 * 359.97438 * 22 21 19 24 24 C 1.38811 * 120.00130 * 179.97438 * 22 21 19 25 25 N 1.31619 * 120.00074 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00025 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47144 * 180.02562 * 26 24 22 28 28 H 1.48501 * 109.47067 * 300.00128 * 26 24 22 29 29 H 1.48494 * 109.47095 * 60.00437 * 26 24 22 30 30 C 1.53087 * 115.49761 * 334.12779 * 14 4 2 31 31 H 1.08999 * 109.47600 * 300.00245 * 1 2 3 32 32 H 1.09000 * 109.46663 * 60.00643 * 1 2 3 33 33 H 1.08998 * 109.47012 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47600 * 239.99755 * 2 1 3 35 35 H 1.09007 * 109.46770 * 308.36709 * 3 2 1 36 36 H 1.09001 * 109.47476 * 68.36331 * 3 2 1 37 37 H 1.08995 * 109.47345 * 188.37451 * 3 2 1 38 38 H 1.08994 * 109.47776 * 300.00492 * 9 7 6 39 39 H 1.08997 * 109.46793 * 60.01067 * 9 7 6 40 40 H 1.09000 * 115.54935 * 29.33311 * 10 9 7 41 41 H 1.08998 * 117.49832 * 0.02562 * 11 10 9 42 42 H 1.08996 * 117.50072 * 145.02229 * 11 10 9 43 43 H 1.08999 * 117.50217 * 214.98137 * 12 10 9 44 44 H 1.09005 * 117.50328 * 0.02562 * 12 10 9 45 45 H 1.08996 * 113.81346 * 221.75807 * 13 6 4 46 46 H 1.09000 * 113.92021 * 90.23497 * 13 6 4 47 47 H 1.09003 * 110.52430 * 272.05791 * 15 14 4 48 48 H 1.08994 * 110.53367 * 34.67691 * 15 14 4 49 49 H 0.96694 * 113.99901 * 174.89802 * 18 16 15 50 50 H 0.97001 * 119.99962 * 268.22305 * 21 19 16 51 51 H 0.96998 * 120.00111 * 180.02562 * 25 24 22 52 52 H 1.08994 * 110.10228 * 110.80268 * 30 14 4 53 53 H 1.09000 * 110.15650 * 349.21158 * 30 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 1 1.4998 -1.6440 1.4603 6 7 2.1966 0.1603 2.4248 7 6 1.3882 0.5386 3.4346 8 8 0.2515 0.1195 3.4909 9 6 1.8970 1.4816 4.4943 10 6 0.7890 1.7466 5.5157 11 6 0.2660 3.1795 5.6349 12 6 1.1448 2.5914 6.7406 13 6 3.5936 0.4621 2.0500 14 6 3.5626 -0.8711 1.2982 15 6 4.0763 -2.0811 2.0904 16 6 5.4511 -2.3987 1.4434 17 1 6.2239 -1.7391 1.8383 18 8 5.8030 -3.7691 1.6433 19 6 5.1988 -2.1105 -0.0582 20 1 4.7072 -2.9601 -0.5322 21 7 6.4586 -1.8031 -0.7398 22 6 7.2134 -2.8139 -1.2723 23 1 6.8802 -3.8379 -1.1894 24 6 8.4068 -2.5225 -1.9186 25 7 8.8131 -1.2747 -2.0192 26 14 9.4368 -3.9016 -2.6444 27 1 10.6543 -3.3310 -3.2748 28 1 9.8331 -4.8433 -1.5667 29 1 8.6423 -4.6268 -3.6680 30 6 4.2681 -0.8773 -0.0604 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.5597 1.9977 -0.8058 36 1 1.8039 1.9114 0.9552 37 1 3.1196 1.4462 -0.1497 38 1 2.7547 1.0349 4.9969 39 1 2.1964 2.4215 4.0306 40 1 0.0734 0.9361 5.6539 41 1 0.7108 3.9333 4.9854 42 1 -0.7940 3.3119 5.8515 43 1 0.6630 2.3370 7.6846 44 1 2.1681 2.9588 6.8187 45 1 4.2828 0.4753 2.8943 46 1 3.6991 1.3312 1.4006 47 1 4.1984 -1.8250 3.1428 48 1 3.3974 -2.9266 1.9801 49 1 6.6151 -4.0365 1.1918 50 1 6.7580 -0.8834 -0.8139 51 1 9.6469 -1.0711 -2.4712 52 1 4.8537 0.0338 -0.1825 53 1 3.5359 -0.9620 -0.8634 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093420788.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:16 Heat of formation + Delta-G solvation = -39.119146 kcal Electronic energy + Delta-G solvation = -30878.128423 eV Core-core repulsion = 26943.925882 eV Total energy + Delta-G solvation = -3934.202541 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.53980 -40.00407 -38.62858 -37.72762 -35.96891 -35.25919 -34.56067 -32.45458 -30.90233 -29.38675 -28.60371 -28.22820 -26.90699 -25.78708 -24.34156 -23.23343 -22.28684 -21.52152 -21.01849 -20.28462 -19.29748 -18.99304 -18.25967 -17.73533 -17.31743 -17.14473 -16.67348 -16.28256 -15.79868 -15.66491 -15.21759 -15.16968 -14.97993 -14.86643 -14.66108 -14.19635 -14.06077 -13.78739 -13.41776 -13.39040 -13.28312 -12.98495 -12.84369 -12.73586 -12.62803 -12.52118 -12.39644 -12.38378 -12.32543 -12.23479 -11.83616 -11.81305 -11.65073 -11.59775 -11.50294 -11.30596 -11.27392 -11.03932 -10.92606 -10.61776 -10.53531 -9.57734 -8.91264 -7.91430 -5.18581 1.52145 1.52581 1.58287 1.65982 1.83317 2.58657 2.89678 3.08035 3.34677 3.42835 3.46545 3.76342 3.77567 3.82268 3.86569 3.95906 4.01013 4.05648 4.16582 4.19286 4.33124 4.41742 4.44367 4.48720 4.55562 4.56795 4.60633 4.67734 4.72133 4.74533 4.78307 4.79543 4.81269 4.87800 4.95535 4.98706 5.01473 5.04478 5.05765 5.09311 5.19841 5.26335 5.27093 5.30774 5.34239 5.39022 5.44556 5.50675 5.57348 6.31020 6.78603 6.87454 7.20351 7.38844 8.13713 8.37649 9.31172 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017710 B = 0.002717 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.646408 B =10303.238358 C =10793.573055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.097 4.097 3 C -0.147 4.147 4 C 0.151 3.849 5 H 0.074 0.926 6 N -0.629 5.629 7 C 0.531 3.469 8 O -0.585 6.585 9 C -0.098 4.098 10 C -0.159 4.159 11 C -0.180 4.180 12 C -0.165 4.165 13 C 0.106 3.894 14 C -0.076 4.076 15 C -0.079 4.079 16 C 0.081 3.919 17 H 0.051 0.949 18 O -0.583 6.583 19 C 0.142 3.858 20 H 0.046 0.954 21 N -0.728 5.728 22 C -0.239 4.239 23 H 0.076 0.924 24 C -0.067 4.067 25 N -0.964 5.964 26 Si 0.963 3.037 27 H -0.300 1.300 28 H -0.277 1.277 29 H -0.283 1.283 30 C -0.104 4.104 31 H 0.037 0.963 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.110 0.890 45 H 0.098 0.902 46 H 0.117 0.883 47 H 0.075 0.925 48 H 0.068 0.932 49 H 0.385 0.615 50 H 0.376 0.624 51 H 0.250 0.750 52 H 0.079 0.921 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.218 9.467 11.783 20.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.116 4.116 3 C -0.204 4.204 4 C 0.048 3.952 5 H 0.092 0.908 6 N -0.363 5.363 7 C 0.322 3.678 8 O -0.466 6.466 9 C -0.137 4.137 10 C -0.178 4.178 11 C -0.217 4.217 12 C -0.202 4.202 13 C -0.015 4.015 14 C -0.078 4.078 15 C -0.117 4.117 16 C 0.020 3.980 17 H 0.069 0.931 18 O -0.390 6.390 19 C 0.032 3.968 20 H 0.064 0.936 21 N -0.368 5.368 22 C -0.371 4.371 23 H 0.094 0.906 24 C -0.260 4.260 25 N -0.615 5.615 26 Si 0.793 3.207 27 H -0.227 1.227 28 H -0.203 1.203 29 H -0.210 1.210 30 C -0.143 4.143 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.108 0.892 41 H 0.121 0.879 42 H 0.110 0.890 43 H 0.118 0.882 44 H 0.128 0.872 45 H 0.116 0.884 46 H 0.135 0.865 47 H 0.094 0.906 48 H 0.087 0.913 49 H 0.233 0.767 50 H 0.209 0.791 51 H 0.059 0.941 52 H 0.098 0.902 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.431 9.155 12.286 21.746 hybrid contribution 1.239 -0.655 -0.946 1.691 sum -14.192 8.500 11.340 20.057 Atomic orbital electron populations 1.21734 0.94874 1.01561 1.01382 1.21338 0.95948 0.97496 0.96783 1.22049 1.01776 0.94791 1.01782 1.22707 0.94644 0.92504 0.85348 0.90784 1.50218 1.14694 1.47816 1.23575 1.20802 0.84001 0.80785 0.82168 1.90658 1.20326 1.58082 1.77492 1.21181 0.98970 0.99582 0.93950 1.21971 1.00952 0.95511 0.99355 1.23109 1.00189 0.95430 1.02980 1.23080 1.01538 1.02635 0.92978 1.23827 0.81240 0.97420 0.99038 1.22114 0.94189 0.95537 0.95911 1.21883 0.94746 0.96434 0.98669 1.23652 0.95448 0.82094 0.96822 0.93102 1.86227 1.48471 1.27952 1.76395 1.21961 0.86606 0.96679 0.91513 0.93569 1.42588 1.21504 1.06374 1.66288 1.19529 1.00540 0.89473 1.27543 0.90638 1.25412 0.99897 0.97985 1.02739 1.69772 1.23799 1.18265 1.49628 0.85370 0.77969 0.78947 0.78404 1.22675 1.20338 1.20965 1.22183 0.97949 0.98288 0.95871 0.94364 0.91454 0.93085 0.88567 0.92079 0.92945 0.90961 0.87152 0.87083 0.89153 0.87860 0.89022 0.88230 0.87208 0.88414 0.86527 0.90618 0.91346 0.76662 0.79109 0.94119 0.90249 0.89829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.18 71.98 0.66 -2.25 16 2 C -0.10 -1.92 2.49 -10.79 -0.03 -1.95 16 3 C -0.15 -2.57 7.49 71.98 0.54 -2.03 16 4 C 0.15 3.38 3.86 44.78 0.17 3.55 16 5 H 0.07 1.90 8.02 -2.39 -0.02 1.89 16 6 N -0.63 -13.26 2.36 -825.57 -1.95 -15.21 16 7 C 0.53 12.71 8.05 87.66 0.71 13.42 16 8 O -0.58 -18.89 16.21 -3.02 -0.05 -18.94 16 9 C -0.10 -1.62 5.73 29.85 0.17 -1.45 16 10 C -0.16 -2.89 5.41 -10.80 -0.06 -2.94 16 11 C -0.18 -2.68 10.18 30.59 0.31 -2.37 16 12 C -0.17 -2.17 10.25 30.59 0.31 -1.85 16 13 C 0.11 1.86 6.77 86.17 0.58 2.44 16 14 C -0.08 -1.69 1.05 -51.89 -0.05 -1.74 16 15 C -0.08 -2.08 5.91 31.52 0.19 -1.89 16 16 C 0.08 2.66 3.97 32.03 0.13 2.78 16 17 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 18 O -0.58 -20.94 13.46 -148.98 -2.00 -22.95 16 19 C 0.14 4.96 3.24 46.17 0.15 5.11 16 20 H 0.05 1.77 8.10 -2.39 -0.02 1.75 16 21 N -0.73 -32.52 5.22 -317.37 -1.66 -34.18 16 22 C -0.24 -12.07 9.59 84.03 0.81 -11.26 16 23 H 0.08 3.69 7.83 -2.91 -0.02 3.66 16 24 C -0.07 -3.61 5.50 84.86 0.47 -3.14 16 25 N -0.96 -55.22 13.06 21.65 0.28 -54.94 16 26 Si 0.96 43.78 29.55 68.60 2.03 45.80 16 27 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 28 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 29 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 30 C -0.10 -2.72 4.68 31.13 0.15 -2.58 16 31 H 0.04 0.96 8.06 -2.39 -0.02 0.94 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.10 1.88 6.16 -2.39 -0.01 1.86 16 35 H 0.06 1.00 8.13 -2.38 -0.02 0.98 16 36 H 0.05 0.95 6.69 -2.39 -0.02 0.94 16 37 H 0.07 1.19 5.13 -2.39 -0.01 1.18 16 38 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.11 1.40 7.88 -2.39 -0.02 1.39 16 40 H 0.09 2.14 7.30 -2.39 -0.02 2.12 16 41 H 0.10 1.31 8.03 -2.39 -0.02 1.29 16 42 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.10 1.45 8.01 -2.39 -0.02 1.43 16 46 H 0.12 1.73 5.00 -2.39 -0.01 1.72 16 47 H 0.08 1.84 7.87 -2.39 -0.02 1.82 16 48 H 0.07 1.92 8.04 -2.39 -0.02 1.90 16 49 H 0.38 13.69 8.73 -74.06 -0.65 13.04 16 50 H 0.38 17.98 7.55 -92.71 -0.70 17.28 16 51 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 52 H 0.08 2.06 7.17 -2.39 -0.02 2.04 16 53 H 0.08 2.06 5.67 -2.39 -0.01 2.05 16 Total: -1.00 -64.86 409.20 1.42 -63.45 By element: Atomic # 1 Polarization: 45.55 SS G_CDS: -0.43 Total: 45.12 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 5.20 Total: -8.15 kcal Atomic # 7 Polarization: -101.00 SS G_CDS: -3.32 Total: -104.33 kcal Atomic # 8 Polarization: -39.83 SS G_CDS: -2.05 Total: -41.88 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -64.86 1.42 -63.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093420788.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.326 kcal (2) G-P(sol) polarization free energy of solvation -64.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds