Wall clock time and date at job start Tue Mar 31 2020 21:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50702 * 120.00125 * 2 1 4 4 C 1.32994 * 120.00358 * 180.02562 * 2 1 3 5 5 C 1.47106 * 119.99698 * 4.02003 * 4 2 1 6 6 O 1.21611 * 120.00050 * 353.98577 * 5 4 2 7 7 N 1.34776 * 119.99604 * 173.98866 * 5 4 2 8 8 C 1.47311 * 135.90464 * 359.97438 * 7 5 4 9 9 C 1.52159 * 87.63473 * 205.99900 * 8 7 5 10 10 C 1.52995 * 116.66433 * 92.06769 * 9 8 7 11 11 C 1.54182 * 106.19734 * 108.85633 * 10 9 8 12 12 H 1.09000 * 110.03491 * 118.31454 * 11 10 9 13 13 O 1.42897 * 110.03845 * 239.70054 * 11 10 9 14 14 C 1.54370 * 106.59509 * 359.03315 * 11 10 9 15 15 H 1.09004 * 110.45289 * 264.52885 * 14 11 10 16 16 N 1.46495 * 110.45216 * 142.10325 * 14 11 10 17 17 C 1.36935 * 119.99919 * 86.45896 * 16 14 11 18 18 H 1.08003 * 120.00067 * 359.97438 * 17 16 14 19 19 C 1.38819 * 120.00181 * 180.02562 * 17 16 14 20 20 N 1.31616 * 120.00314 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99709 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.47154 * 90.00645 * 21 19 17 23 23 H 1.48501 * 109.46666 * 210.00620 * 21 19 17 24 24 H 1.48499 * 109.47198 * 330.00264 * 21 19 17 25 25 C 1.53609 * 116.26664 * 218.04271 * 9 8 7 26 26 C 1.47321 * 135.89687 * 180.02562 * 7 5 4 27 27 H 1.09001 * 113.52567 * 39.24339 * 26 7 5 28 28 C 1.52994 * 113.52641 * 268.68794 * 26 7 5 29 29 C 1.53002 * 109.47235 * 53.94842 * 28 26 7 30 30 C 1.53006 * 109.46984 * 173.94475 * 28 26 7 31 31 H 1.08997 * 109.46842 * 243.19357 * 1 2 3 32 32 H 1.08993 * 109.47280 * 3.19517 * 1 2 3 33 33 H 1.08999 * 109.47003 * 123.19238 * 1 2 3 34 34 H 1.08996 * 109.47418 * 270.00704 * 3 2 1 35 35 H 1.09010 * 109.46799 * 29.99922 * 3 2 1 36 36 H 1.08999 * 109.47505 * 149.99900 * 3 2 1 37 37 H 1.07997 * 120.00171 * 184.02127 * 4 2 1 38 38 H 1.09000 * 113.52891 * 320.69247 * 8 7 5 39 39 H 1.09002 * 113.52696 * 91.31417 * 8 7 5 40 40 H 1.08994 * 110.10809 * 228.04271 * 10 9 8 41 41 H 1.09003 * 110.10374 * 349.68100 * 10 9 8 42 42 H 0.96693 * 114.00559 * 180.02562 * 13 11 10 43 43 H 0.97003 * 120.00368 * 266.45782 * 16 14 11 44 44 H 0.96997 * 120.00238 * 179.97438 * 20 19 17 45 45 H 1.08996 * 110.78408 * 23.39514 * 25 9 8 46 46 H 1.09005 * 110.78175 * 146.83479 * 25 9 8 47 47 H 1.09001 * 109.47331 * 293.94683 * 28 26 7 48 48 H 1.09001 * 109.47091 * 59.99694 * 29 28 26 49 49 H 1.08998 * 109.47162 * 179.97438 * 29 28 26 50 50 H 1.08999 * 109.47031 * 300.00291 * 29 28 26 51 51 H 1.09004 * 109.46907 * 185.66874 * 30 28 26 52 52 H 1.09000 * 109.47214 * 305.66810 * 30 28 26 53 53 H 1.08994 * 109.46761 * 65.66984 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4392 -2.4241 -0.0904 6 8 0.2237 -2.4296 -0.0540 7 7 2.1151 -3.5837 -0.2131 8 6 3.5319 -3.9793 -0.2914 9 6 3.0794 -5.2149 -1.0554 10 6 3.0475 -5.1053 -2.5811 11 6 4.2103 -5.9751 -3.0992 12 1 3.8243 -6.7826 -3.7213 13 8 5.1246 -5.1736 -3.8499 14 6 4.9143 -6.5568 -1.8546 15 1 5.7683 -5.9391 -1.5764 16 7 5.3415 -7.9354 -2.1056 17 6 6.5535 -8.1803 -2.6940 18 1 7.1943 -7.3571 -2.9734 19 6 6.9580 -9.4867 -2.9324 20 7 8.1227 -9.7221 -3.4984 21 14 5.8493 -10.9105 -2.4498 22 1 4.9511 -11.2449 -3.5840 23 1 6.6814 -12.0932 -2.1120 24 1 5.0343 -10.5254 -1.2697 25 6 3.8303 -6.5186 -0.7455 26 6 1.7590 -5.0086 -0.3283 27 1 0.8843 -5.1893 -0.9531 28 6 1.6844 -5.7303 1.0187 29 6 0.7352 -4.9742 1.9505 30 6 1.1644 -7.1535 0.8066 31 1 -0.3633 -0.4634 0.9172 32 1 -0.3633 1.0260 -0.0573 33 1 -0.3633 -0.5626 -0.8600 34 1 2.4421 1.6198 -1.0276 35 1 1.6714 2.0648 0.5139 36 1 3.2129 1.1748 0.5138 37 1 3.2500 -1.1529 0.0651 38 1 4.1414 -3.2989 -0.8861 39 1 3.9747 -4.2055 0.6786 40 1 2.0988 -5.4813 -2.9640 41 1 3.1907 -4.0685 -2.8853 42 1 5.8791 -5.6641 -4.2036 43 1 4.7658 -8.6749 -1.8550 44 1 8.4056 -10.6349 -3.6646 45 1 4.2890 -6.4754 0.2423 46 1 3.1639 -7.3774 -0.8264 47 1 2.6778 -5.7692 1.4656 48 1 -0.2582 -4.9352 1.5036 49 1 0.6817 -5.4886 2.9100 50 1 1.1056 -3.9602 2.1016 51 1 1.0157 -7.6339 1.7737 52 1 0.2168 -7.1178 0.2690 53 1 1.8903 -7.7227 0.2260 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093421539.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:28 Heat of formation + Delta-G solvation = -51.110448 kcal Electronic energy + Delta-G solvation = -30954.403591 eV Core-core repulsion = 27019.681068 eV Total energy + Delta-G solvation = -3934.722522 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.53235 -40.06688 -38.64279 -36.24732 -36.11074 -35.43150 -34.65015 -32.88469 -30.36500 -29.27277 -28.69516 -28.36695 -27.76544 -26.74954 -25.75344 -24.36258 -22.27298 -21.56341 -20.82312 -19.77398 -19.28704 -18.86690 -18.34295 -18.12783 -16.92141 -16.66299 -16.44210 -16.33173 -15.39068 -15.30208 -15.27546 -15.08174 -14.91414 -14.77382 -14.58680 -14.39083 -14.23489 -13.88728 -13.82048 -13.45476 -13.27501 -13.15644 -13.06420 -12.95429 -12.82354 -12.69134 -12.59195 -12.42297 -12.37668 -12.29944 -12.12632 -12.02553 -11.89916 -11.79161 -11.71965 -11.57450 -11.17223 -10.90929 -10.64727 -10.51032 -10.17479 -9.50375 -9.22995 -7.98666 -5.32116 0.41189 1.41845 1.44169 1.51631 1.88138 2.29986 2.51969 3.10812 3.20556 3.31754 3.57551 3.60733 3.74768 3.81887 3.91658 3.94322 4.01600 4.04725 4.20455 4.33529 4.41774 4.44824 4.52024 4.55387 4.56817 4.61600 4.64750 4.68264 4.69795 4.77776 4.80644 4.84127 4.88264 4.90620 4.94217 5.00262 5.02213 5.08773 5.09332 5.14759 5.18532 5.22998 5.26432 5.36305 5.43902 5.51362 5.53664 5.65879 5.81574 6.23785 6.80857 6.85334 7.11658 7.23000 7.87688 8.06150 9.22099 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016661 B = 0.003062 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.146439 B = 9141.270472 C =10296.754967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.029 4.029 3 C -0.124 4.124 4 C -0.247 4.247 5 C 0.565 3.435 6 O -0.577 6.577 7 N -0.635 5.635 8 C 0.116 3.884 9 C -0.080 4.080 10 C -0.079 4.079 11 C 0.082 3.918 12 H 0.043 0.957 13 O -0.582 6.582 14 C 0.149 3.851 15 H 0.059 0.941 16 N -0.745 5.745 17 C -0.227 4.227 18 H 0.064 0.936 19 C -0.062 4.062 20 N -0.982 5.982 21 Si 0.947 3.053 22 H -0.283 1.283 23 H -0.302 1.302 24 H -0.245 1.245 25 C -0.103 4.103 26 C 0.154 3.846 27 H 0.072 0.928 28 C -0.090 4.090 29 C -0.130 4.130 30 C -0.149 4.149 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.139 0.861 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.384 0.616 43 H 0.366 0.634 44 H 0.256 0.744 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.040 0.960 49 H 0.067 0.933 50 H 0.036 0.964 51 H 0.069 0.931 52 H 0.053 0.947 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.005 16.993 11.299 25.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.031 4.031 3 C -0.180 4.180 4 C -0.268 4.268 5 C 0.360 3.640 6 O -0.460 6.460 7 N -0.368 5.368 8 C -0.006 4.006 9 C -0.081 4.081 10 C -0.117 4.117 11 C 0.020 3.980 12 H 0.061 0.939 13 O -0.389 6.389 14 C 0.040 3.960 15 H 0.077 0.923 16 N -0.388 5.388 17 C -0.358 4.358 18 H 0.082 0.918 19 C -0.253 4.253 20 N -0.633 5.633 21 Si 0.775 3.225 22 H -0.210 1.210 23 H -0.230 1.230 24 H -0.169 1.169 25 C -0.142 4.142 26 C 0.050 3.950 27 H 0.091 0.909 28 C -0.110 4.110 29 C -0.188 4.188 30 C -0.206 4.206 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.157 0.843 38 H 0.104 0.896 39 H 0.124 0.876 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.232 0.768 43 H 0.200 0.800 44 H 0.065 0.935 45 H 0.109 0.891 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.059 0.941 49 H 0.086 0.914 50 H 0.055 0.945 51 H 0.088 0.912 52 H 0.072 0.928 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.969 17.723 11.411 26.444 hybrid contribution 0.290 -1.749 -0.439 1.826 sum -15.679 15.974 10.971 24.927 Atomic orbital electron populations 1.20974 0.91528 1.01879 1.02589 1.22886 0.96672 0.95548 0.88018 1.21076 1.00293 0.92718 1.03888 1.22407 1.00833 0.90985 1.12562 1.18501 0.86406 0.83578 0.75509 1.90745 1.14886 1.87232 1.53155 1.49713 1.09838 1.05292 1.71939 1.23065 0.83143 0.93730 1.00678 1.21778 0.95870 0.95763 0.94690 1.21575 0.96901 1.00398 0.92852 1.23361 0.89765 0.91790 0.93065 0.93877 1.86289 1.39335 1.40482 1.72839 1.21977 0.95665 0.84924 0.93449 0.92303 1.42792 1.19197 1.03199 1.73624 1.19034 0.94226 0.92627 1.29923 0.91818 1.25451 0.98214 0.99964 1.01713 1.69872 1.22756 1.19985 1.50663 0.85520 0.78564 0.79296 0.79096 1.21000 1.22972 1.16884 1.22502 0.96357 0.96356 0.98939 1.22453 0.97143 0.79216 0.96179 0.90938 1.21278 1.00829 0.95390 0.93461 1.21628 0.98665 0.99218 0.99262 1.21933 1.01351 0.94610 1.02730 0.91641 0.90659 0.91979 0.89236 0.89607 0.90140 0.84349 0.89628 0.87613 0.90306 0.91175 0.76782 0.79985 0.93548 0.89122 0.89419 0.89371 0.94051 0.91408 0.94463 0.91218 0.92777 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.19 8.34 71.24 0.59 -1.59 16 2 C -0.03 -0.51 6.11 -17.62 -0.11 -0.62 16 3 C -0.12 -1.27 9.97 71.24 0.71 -0.56 16 4 C -0.25 -5.02 9.46 23.43 0.22 -4.80 16 5 C 0.56 14.58 7.18 86.57 0.62 15.20 16 6 O -0.58 -18.08 13.88 -4.07 -0.06 -18.14 16 7 N -0.64 -14.48 2.93 -838.71 -2.46 -16.93 16 8 C 0.12 2.28 7.22 83.56 0.60 2.89 16 9 C -0.08 -1.75 0.94 -52.54 -0.05 -1.80 16 10 C -0.08 -2.07 6.09 30.99 0.19 -1.88 16 11 C 0.08 2.62 4.01 31.46 0.13 2.74 16 12 H 0.04 1.52 8.04 -2.39 -0.02 1.50 16 13 O -0.58 -20.25 13.23 -148.98 -1.97 -22.22 16 14 C 0.15 4.88 3.25 46.19 0.15 5.03 16 15 H 0.06 2.10 8.05 -2.39 -0.02 2.08 16 16 N -0.75 -30.81 4.96 -317.30 -1.57 -32.39 16 17 C -0.23 -11.80 10.45 84.04 0.88 -10.93 16 18 H 0.06 3.61 8.06 -2.91 -0.02 3.58 16 19 C -0.06 -3.43 5.50 84.86 0.47 -2.97 16 20 N -0.98 -60.44 13.97 21.65 0.30 -60.14 16 21 Si 0.95 42.96 27.74 68.60 1.90 44.86 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 24 H -0.24 -9.70 6.52 99.48 0.65 -9.05 16 25 C -0.10 -2.46 4.43 31.53 0.14 -2.32 16 26 C 0.15 3.33 3.33 42.17 0.14 3.47 16 27 H 0.07 1.77 8.05 -2.39 -0.02 1.76 16 28 C -0.09 -1.68 2.18 -10.79 -0.02 -1.70 16 29 C -0.13 -2.64 8.95 71.98 0.64 -2.00 16 30 C -0.15 -2.54 9.04 71.98 0.65 -1.89 16 31 H 0.06 1.46 7.50 -2.39 -0.02 1.44 16 32 H 0.07 1.04 7.96 -2.39 -0.02 1.02 16 33 H 0.06 1.49 6.93 -2.39 -0.02 1.47 16 34 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.09 0.65 8.07 -2.38 -0.02 0.63 16 36 H 0.08 0.70 8.06 -2.39 -0.02 0.68 16 37 H 0.14 2.29 7.98 -2.91 -0.02 2.27 16 38 H 0.09 1.67 8.07 -2.39 -0.02 1.65 16 39 H 0.11 1.72 7.45 -2.39 -0.02 1.70 16 40 H 0.08 1.96 8.07 -2.39 -0.02 1.94 16 41 H 0.07 1.94 7.74 -2.39 -0.02 1.92 16 42 H 0.38 13.40 9.11 -74.06 -0.67 12.72 16 43 H 0.37 14.55 5.57 -92.71 -0.52 14.04 16 44 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 45 H 0.09 1.92 7.34 -2.39 -0.02 1.90 16 46 H 0.09 2.02 5.67 -2.38 -0.01 2.01 16 47 H 0.09 1.50 6.32 -2.39 -0.02 1.49 16 48 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.04 0.85 7.05 -2.39 -0.02 0.84 16 51 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 52 H 0.05 0.94 8.13 -2.39 -0.02 0.92 16 53 H 0.07 1.17 5.40 -2.39 -0.01 1.16 16 Total: -1.00 -68.07 409.39 1.76 -66.31 By element: Atomic # 1 Polarization: 42.71 SS G_CDS: -0.34 Total: 42.37 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 5.96 Total: -3.73 kcal Atomic # 7 Polarization: -105.73 SS G_CDS: -3.73 Total: -109.45 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -2.03 Total: -40.36 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.90 Total: 44.86 kcal Total: -68.07 1.76 -66.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093421539.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.199 kcal (2) G-P(sol) polarization free energy of solvation -68.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds