Wall clock time and date at job start Tue Mar 31 2020 21:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47309 * 2 1 4 4 C 1.53002 * 109.46969 * 120.00261 * 2 1 3 5 5 H 1.09002 * 113.07863 * 197.17122 * 4 2 1 6 6 N 1.47748 * 113.81068 * 329.06735 * 4 2 1 7 7 C 1.34776 * 134.41355 * 270.18613 * 6 4 2 8 8 O 1.21286 * 119.99965 * 3.75217 * 7 6 4 9 9 C 1.50695 * 119.99932 * 183.75632 * 7 6 4 10 10 C 1.53005 * 115.55148 * 56.64421 * 9 7 6 11 11 C 1.53000 * 117.49876 * 270.97320 * 9 7 6 12 12 C 1.52999 * 117.49796 * 202.31258 * 9 7 6 13 13 C 1.47741 * 91.17071 * 90.22457 * 6 4 2 14 14 C 1.53085 * 85.85205 * 24.00961 * 13 6 4 15 15 C 1.53079 * 115.50236 * 219.89926 * 14 13 6 16 16 C 1.54491 * 106.23521 * 229.99501 * 15 14 13 17 17 H 1.09006 * 110.59300 * 95.23564 * 16 15 14 18 18 O 1.42905 * 110.48177 * 217.80716 * 16 15 14 19 19 C 1.54967 * 104.23429 * 336.49302 * 16 15 14 20 20 H 1.09002 * 110.73089 * 278.97974 * 19 16 15 21 21 N 1.46501 * 110.73672 * 155.84656 * 19 16 15 22 22 C 1.36933 * 119.99459 * 86.45617 * 21 19 16 23 23 H 1.08001 * 120.00406 * 359.97438 * 22 21 19 24 24 C 1.38817 * 119.99672 * 180.02562 * 22 21 19 25 25 N 1.31615 * 120.00085 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99956 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47066 * 89.99575 * 26 24 22 28 28 H 1.48493 * 109.47171 * 209.99664 * 26 24 22 29 29 H 1.48495 * 109.47050 * 330.00190 * 26 24 22 30 30 C 1.53469 * 115.25890 * 93.49724 * 14 13 6 31 31 H 1.08997 * 109.47079 * 291.75277 * 1 2 3 32 32 H 1.09000 * 109.47164 * 51.75414 * 1 2 3 33 33 H 1.09005 * 109.47625 * 171.75147 * 1 2 3 34 34 H 1.09007 * 109.46963 * 239.99867 * 2 1 3 35 35 H 1.08998 * 109.46665 * 184.00245 * 3 2 1 36 36 H 1.08996 * 109.47088 * 303.99904 * 3 2 1 37 37 H 1.09000 * 109.46675 * 64.00453 * 3 2 1 38 38 H 1.08994 * 109.47397 * 65.66241 * 10 9 7 39 39 H 1.09004 * 109.46971 * 185.66703 * 10 9 7 40 40 H 1.08999 * 109.46881 * 305.66101 * 10 9 7 41 41 H 1.08997 * 117.49750 * 359.97438 * 11 9 7 42 42 H 1.08994 * 117.50332 * 145.02564 * 11 9 7 43 43 H 1.09004 * 117.50099 * 214.97777 * 12 9 7 44 44 H 1.08998 * 117.49840 * 359.97438 * 12 9 7 45 45 H 1.09002 * 113.81201 * 269.78164 * 13 6 4 46 46 H 1.08996 * 113.81904 * 138.24323 * 13 6 4 47 47 H 1.09004 * 110.10376 * 110.80510 * 15 14 13 48 48 H 1.09000 * 110.10394 * 349.18469 * 15 14 13 49 49 H 0.96703 * 113.99631 * 176.26869 * 18 16 15 50 50 H 0.96996 * 120.00263 * 266.73156 * 21 19 16 51 51 H 0.96999 * 119.99648 * 180.02562 * 25 24 22 52 52 H 1.09003 * 110.53379 * 34.82524 * 30 14 13 53 53 H 1.09000 * 110.53072 * 272.06796 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 3.0856 -0.5067 1.4696 6 7 1.1456 -0.5941 2.4184 7 6 1.0392 0.2865 3.4331 8 8 1.7550 1.2651 3.4644 9 6 0.0310 0.0552 4.5290 10 6 0.1519 -1.2803 5.2658 11 6 -1.3740 0.6266 4.3284 12 6 -0.4225 1.2708 5.3398 13 6 0.4151 -1.8184 2.0310 14 6 1.6937 -2.2122 1.2869 15 6 1.4848 -2.8741 -0.0775 16 6 2.3463 -4.1565 -0.0719 17 1 1.7471 -5.0197 0.2180 18 8 2.9369 -4.3678 -1.3559 19 6 3.4409 -3.8756 0.9886 20 1 4.2411 -3.2683 0.5656 21 7 3.9735 -5.1288 1.5288 22 6 5.0027 -5.7671 0.8897 23 1 5.4214 -5.3469 -0.0128 24 6 5.5071 -6.9550 1.4013 25 7 4.9965 -7.4673 2.5008 26 14 6.9106 -7.8262 0.5290 27 1 8.2062 -7.3350 1.0632 28 1 6.8035 -9.2894 0.7581 29 1 6.8379 -7.5464 -0.9275 30 6 2.6696 -3.0906 2.0813 31 1 -0.3633 0.3808 0.9545 32 1 -0.3633 0.6362 -0.8071 33 1 -0.3634 -1.0170 -0.1474 34 1 1.8933 -0.5139 -0.8900 35 1 3.1276 1.4432 -0.0717 36 1 1.6194 1.9766 -0.8519 37 1 1.7364 1.9351 0.9237 38 1 1.0926 -1.3081 5.8155 39 1 -0.6795 -1.3874 5.9625 40 1 0.1286 -2.0968 4.5441 41 1 -1.5690 1.1703 3.4040 42 1 -2.2122 0.0515 4.7217 43 1 -0.6352 1.1191 6.3981 44 1 0.0087 2.2378 5.0809 45 1 -0.4363 -1.6342 1.3758 46 1 0.1752 -2.4718 2.8698 47 1 1.8141 -2.2052 -0.8728 48 1 0.4339 -3.1295 -0.2132 49 1 3.5339 -5.1276 -1.3940 50 1 3.5945 -5.5085 2.3369 51 1 5.3492 -8.2971 2.8584 52 1 2.1252 -3.7753 2.7317 53 1 3.3538 -2.4724 2.6627 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093449855.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:40 Heat of formation + Delta-G solvation = -36.631460 kcal Electronic energy + Delta-G solvation = -31551.860139 eV Core-core repulsion = 27617.765473 eV Total energy + Delta-G solvation = -3934.094666 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.62189 -40.32324 -38.63350 -37.46290 -35.99405 -35.25738 -34.50531 -32.48582 -30.01668 -29.33056 -29.08485 -28.20841 -26.99044 -26.02134 -24.75729 -23.40142 -23.19196 -21.60757 -21.33257 -19.74564 -19.26715 -18.95724 -18.27712 -17.68970 -17.23117 -17.09167 -16.60413 -16.08116 -15.78239 -15.74466 -15.34878 -14.96506 -14.83212 -14.74030 -14.36510 -14.19470 -14.04934 -13.66782 -13.58409 -13.45020 -13.31370 -13.16780 -12.95427 -12.86225 -12.81266 -12.75381 -12.47856 -12.42624 -12.31028 -12.21183 -11.84446 -11.83200 -11.65685 -11.62258 -11.57446 -11.49597 -11.27208 -11.03088 -10.88385 -10.59756 -10.57622 -9.60023 -8.95765 -7.94899 -5.23115 1.48978 1.50255 1.54068 1.57887 1.75282 2.55606 2.77307 3.14709 3.29409 3.37600 3.39039 3.66102 3.69313 3.76992 3.88935 3.90022 3.97280 4.02968 4.06729 4.19119 4.34409 4.42067 4.44829 4.46465 4.52748 4.57928 4.61040 4.69524 4.72659 4.77075 4.79820 4.80366 4.90160 4.91439 4.93090 4.96200 4.98798 5.02786 5.05103 5.11337 5.19473 5.21403 5.23474 5.28800 5.31446 5.38414 5.41094 5.49940 5.53856 6.26989 6.74212 6.88850 7.14783 7.34347 8.08419 8.32389 9.28205 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014683 B = 0.003288 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.497155 B = 8514.338825 C = 9549.846632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.141 4.141 4 C 0.147 3.853 5 H 0.062 0.938 6 N -0.621 5.621 7 C 0.562 3.438 8 O -0.590 6.590 9 C -0.170 4.170 10 C -0.110 4.110 11 C -0.132 4.132 12 C -0.153 4.153 13 C 0.109 3.891 14 C -0.075 4.075 15 C -0.093 4.093 16 C 0.083 3.917 17 H 0.048 0.952 18 O -0.580 6.580 19 C 0.142 3.858 20 H 0.043 0.957 21 N -0.731 5.731 22 C -0.241 4.241 23 H 0.078 0.922 24 C -0.069 4.069 25 N -0.966 5.966 26 Si 0.966 3.034 27 H -0.294 1.294 28 H -0.298 1.298 29 H -0.265 1.265 30 C -0.093 4.093 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.046 0.954 36 H 0.071 0.929 37 H 0.035 0.965 38 H 0.047 0.953 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.131 0.869 43 H 0.121 0.879 44 H 0.082 0.918 45 H 0.126 0.874 46 H 0.097 0.903 47 H 0.089 0.911 48 H 0.100 0.900 49 H 0.383 0.617 50 H 0.374 0.626 51 H 0.250 0.750 52 H 0.077 0.923 53 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.924 14.860 -1.050 23.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.199 4.199 4 C 0.044 3.956 5 H 0.080 0.920 6 N -0.353 5.353 7 C 0.353 3.647 8 O -0.471 6.471 9 C -0.173 4.173 10 C -0.167 4.167 11 C -0.169 4.169 12 C -0.191 4.191 13 C -0.012 4.012 14 C -0.076 4.076 15 C -0.131 4.131 16 C 0.021 3.979 17 H 0.066 0.934 18 O -0.387 6.387 19 C 0.032 3.968 20 H 0.061 0.939 21 N -0.370 5.370 22 C -0.372 4.372 23 H 0.096 0.904 24 C -0.262 4.262 25 N -0.617 5.617 26 Si 0.796 3.204 27 H -0.222 1.222 28 H -0.225 1.225 29 H -0.189 1.189 30 C -0.131 4.131 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.118 0.882 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.111 0.889 42 H 0.149 0.851 43 H 0.139 0.861 44 H 0.100 0.900 45 H 0.144 0.856 46 H 0.115 0.885 47 H 0.107 0.893 48 H 0.118 0.882 49 H 0.231 0.769 50 H 0.206 0.794 51 H 0.059 0.941 52 H 0.096 0.904 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.771 16.000 -1.131 23.940 hybrid contribution 1.889 -1.188 0.451 2.277 sum -15.882 14.812 -0.680 21.728 Atomic orbital electron populations 1.22043 0.93300 1.03059 1.01788 1.21341 0.97790 0.95795 0.96453 1.21767 1.00629 0.96088 1.01393 1.22772 0.94095 0.93093 0.85635 0.92020 1.50033 1.35454 1.26706 1.23145 1.19772 0.82982 0.80198 0.81726 1.90656 1.47221 1.30493 1.78776 1.21410 0.97444 0.98819 0.99662 1.21372 1.02806 0.92618 0.99929 1.23171 0.90934 1.01868 1.00916 1.23069 1.02074 0.95293 0.98635 1.23950 0.95536 0.82946 0.98793 1.22128 0.96324 0.93058 0.96131 1.21983 1.00520 0.94902 0.95669 1.23474 0.94111 0.97166 0.83157 0.93380 1.86236 1.65543 1.54405 1.32515 1.22098 0.94115 0.86811 0.93733 0.93904 1.42549 1.40001 1.23859 1.30629 1.19594 1.09003 1.02525 1.06109 0.90364 1.25476 1.02487 0.99528 0.98694 1.69797 1.45854 1.22021 1.23998 0.85246 0.79239 0.77204 0.78724 1.22194 1.22462 1.18926 1.22082 0.96936 0.97227 0.96892 0.93351 0.91650 0.90167 0.88245 0.93503 0.91003 0.94592 0.93372 0.89145 0.91021 0.88889 0.85062 0.86082 0.89953 0.85609 0.88498 0.89307 0.88164 0.76864 0.79376 0.94089 0.90439 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 7.51 71.98 0.54 -1.66 16 2 C -0.09 -1.87 2.50 -10.79 -0.03 -1.90 16 3 C -0.14 -3.10 9.17 71.98 0.66 -2.44 16 4 C 0.15 3.57 3.79 44.78 0.17 3.74 16 5 H 0.06 1.86 7.99 -2.39 -0.02 1.84 16 6 N -0.62 -14.33 2.33 -825.50 -1.92 -16.26 16 7 C 0.56 15.29 7.36 87.66 0.64 15.94 16 8 O -0.59 -21.28 16.84 -3.05 -0.05 -21.33 16 9 C -0.17 -3.35 2.30 -52.93 -0.12 -3.47 16 10 C -0.11 -1.85 9.64 71.98 0.69 -1.15 16 11 C -0.13 -1.81 9.92 30.62 0.30 -1.51 16 12 C -0.15 -2.70 9.76 30.62 0.30 -2.40 16 13 C 0.11 1.87 6.56 86.17 0.57 2.44 16 14 C -0.08 -1.69 1.05 -51.89 -0.05 -1.75 16 15 C -0.09 -2.08 4.76 31.13 0.15 -1.93 16 16 C 0.08 2.63 3.93 31.77 0.12 2.75 16 17 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 18 O -0.58 -19.94 13.38 -148.98 -1.99 -21.93 16 19 C 0.14 5.26 3.25 46.38 0.15 5.41 16 20 H 0.04 1.75 8.12 -2.39 -0.02 1.73 16 21 N -0.73 -34.51 5.25 -316.39 -1.66 -36.18 16 22 C -0.24 -12.56 9.52 84.04 0.80 -11.76 16 23 H 0.08 3.92 7.67 -2.91 -0.02 3.89 16 24 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 25 N -0.97 -57.04 13.06 21.65 0.28 -56.75 16 26 Si 0.97 44.65 29.55 68.60 2.03 46.68 16 27 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 28 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 29 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 30 C -0.09 -2.82 5.79 31.47 0.18 -2.64 16 31 H 0.05 0.83 6.73 -2.39 -0.02 0.81 16 32 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 33 H 0.08 0.95 5.16 -2.38 -0.01 0.94 16 34 H 0.10 1.86 6.10 -2.38 -0.01 1.85 16 35 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.03 0.96 7.75 -2.39 -0.02 0.94 16 38 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.09 1.06 8.09 -2.38 -0.02 1.04 16 40 H 0.07 1.14 5.42 -2.39 -0.01 1.13 16 41 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.08 1.80 7.85 -2.39 -0.02 1.78 16 45 H 0.13 1.52 5.01 -2.39 -0.01 1.51 16 46 H 0.10 1.50 5.68 -2.39 -0.01 1.49 16 47 H 0.09 1.97 5.59 -2.39 -0.01 1.96 16 48 H 0.10 1.70 7.62 -2.39 -0.02 1.68 16 49 H 0.38 13.42 8.48 -74.06 -0.63 12.80 16 50 H 0.37 19.06 7.72 -92.71 -0.72 18.35 16 51 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 52 H 0.08 2.31 7.90 -2.39 -0.02 2.29 16 53 H 0.05 1.68 7.87 -2.39 -0.02 1.66 16 Total: -1.00 -69.08 404.24 1.81 -67.27 By element: Atomic # 1 Polarization: 44.58 SS G_CDS: -0.42 Total: 44.16 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 5.55 Total: -5.66 kcal Atomic # 7 Polarization: -105.88 SS G_CDS: -3.30 Total: -109.18 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -2.04 Total: -43.26 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -69.08 1.81 -67.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093449855.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.635 kcal (2) G-P(sol) polarization free energy of solvation -69.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds