Wall clock time and date at job start Tue Mar 31 2020 21:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47118 * 2 1 4 4 C 1.53009 * 109.46948 * 119.99696 * 2 1 3 5 5 H 1.09000 * 113.00743 * 289.60491 * 4 2 1 6 6 N 1.47815 * 113.83109 * 157.56708 * 4 2 1 7 7 C 1.34778 * 134.38202 * 42.01895 * 6 4 2 8 8 O 1.21281 * 119.99639 * 356.83176 * 7 6 4 9 9 C 1.50701 * 119.99999 * 176.82875 * 7 6 4 10 10 C 1.53005 * 115.54828 * 57.91015 * 9 7 6 11 11 C 1.52992 * 117.49854 * 272.23374 * 9 7 6 12 12 C 1.52999 * 117.49569 * 203.57418 * 9 7 6 13 13 C 1.47811 * 91.23618 * 222.04113 * 6 4 2 14 14 C 1.52732 * 113.83137 * 61.47744 * 4 2 1 15 15 C 1.53125 * 116.09586 * 19.22715 * 14 4 2 16 16 C 1.54159 * 106.24660 * 207.97786 * 15 14 4 17 17 H 1.08994 * 110.03039 * 118.41944 * 16 15 14 18 18 O 1.42897 * 110.03166 * 239.80832 * 16 15 14 19 19 C 1.54358 * 106.58766 * 359.13980 * 16 15 14 20 20 H 1.09000 * 110.45113 * 264.54987 * 19 16 15 21 21 N 1.46498 * 110.45207 * 142.12597 * 19 16 15 22 22 C 1.36932 * 120.00592 * 86.45402 * 21 19 16 23 23 H 1.07996 * 119.99929 * 359.97438 * 22 21 19 24 24 C 1.38812 * 120.00353 * 179.97438 * 22 21 19 25 25 N 1.31621 * 120.00312 * 179.97438 * 24 22 21 26 26 Si 1.86807 * 119.99926 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.46861 * 90.00119 * 26 24 22 28 28 H 1.48496 * 109.46992 * 210.00214 * 26 24 22 29 29 H 1.48495 * 109.46998 * 329.99914 * 26 24 22 30 30 C 1.53745 * 115.70528 * 254.58515 * 14 4 2 31 31 H 1.09000 * 109.46629 * 67.05333 * 1 2 3 32 32 H 1.09005 * 109.46862 * 187.04429 * 1 2 3 33 33 H 1.08989 * 109.47445 * 307.04736 * 1 2 3 34 34 H 1.09007 * 109.47631 * 239.99423 * 2 1 3 35 35 H 1.08993 * 109.47340 * 65.99304 * 3 2 1 36 36 H 1.09001 * 109.47328 * 185.99662 * 3 2 1 37 37 H 1.08998 * 109.47221 * 305.99372 * 3 2 1 38 38 H 1.09001 * 109.46974 * 59.64076 * 10 9 7 39 39 H 1.08999 * 109.46810 * 179.64658 * 10 9 7 40 40 H 1.09000 * 109.46388 * 299.64633 * 10 9 7 41 41 H 1.09002 * 117.50368 * 0.02562 * 11 9 7 42 42 H 1.09001 * 117.49808 * 145.02137 * 11 9 7 43 43 H 1.09004 * 117.49557 * 214.97854 * 12 9 7 44 44 H 1.08995 * 117.50032 * 0.02562 * 12 9 7 45 45 H 1.09000 * 113.83203 * 269.55374 * 13 6 4 46 46 H 1.08996 * 113.94477 * 137.97783 * 13 6 4 47 47 H 1.09000 * 110.10061 * 327.17107 * 15 14 4 48 48 H 1.08993 * 110.09956 * 88.72326 * 15 14 4 49 49 H 0.96706 * 114.00000 * 180.02562 * 18 16 15 50 50 H 0.97004 * 119.99916 * 266.45020 * 21 19 16 51 51 H 0.97001 * 120.00372 * 180.02562 * 25 24 22 52 52 H 1.08996 * 110.77970 * 284.73886 * 30 14 4 53 53 H 1.08994 * 110.78097 * 48.17546 * 30 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.8646 -0.1596 2.1669 6 7 3.4174 -1.2413 1.1183 7 6 4.5616 -0.7584 0.5948 8 8 4.5666 0.3198 0.0394 9 6 5.8347 -1.5580 0.6997 10 6 5.7863 -2.9591 0.0869 11 6 6.6890 -1.3646 1.9541 12 6 7.1576 -0.7943 0.6131 13 6 3.0392 -2.5027 1.7898 14 6 1.6167 -2.1864 1.3321 15 6 1.1731 -2.8346 0.0177 16 6 0.1759 -3.9463 0.4000 17 1 -0.8000 -3.7397 -0.0393 18 8 0.6579 -5.2131 -0.0526 19 6 0.0750 -3.9372 1.9403 20 1 0.7515 -4.6757 2.3706 21 7 -1.3027 -4.1980 2.3646 22 6 -1.7407 -5.4867 2.5145 23 1 -1.0706 -6.3109 2.3195 24 6 -3.0460 -5.7338 2.9171 25 7 -3.4671 -6.9725 3.0607 26 14 -4.2048 -4.3082 3.2552 27 1 -4.9218 -3.9462 2.0062 28 1 -5.1891 -4.7059 4.2935 29 1 -3.4247 -3.1392 3.7347 30 6 0.5048 -2.5031 2.3456 31 1 -0.3632 0.4007 -0.9464 32 1 -0.3633 -1.0200 0.1260 33 1 -0.3634 0.6191 0.8201 34 1 1.8934 -0.5139 -0.8900 35 1 1.7669 1.9244 0.9387 36 1 3.1247 1.4444 -0.1074 37 1 1.5917 1.9863 -0.8314 38 1 5.5521 -2.8833 -0.9750 39 1 6.7545 -3.4439 0.2119 40 1 5.0176 -3.5480 0.5873 41 1 6.3301 -0.6593 2.7037 42 1 7.2169 -2.2355 2.3426 43 1 7.9937 -1.2903 0.1199 44 1 7.1072 0.2864 0.4807 45 1 3.1687 -2.4815 2.8719 46 1 3.4628 -3.3942 1.3275 47 1 0.6849 -2.0960 -0.6182 48 1 2.0328 -3.2625 -0.4978 49 1 0.0734 -5.9543 0.1577 50 1 -1.9047 -3.4578 2.5395 51 1 -4.3794 -7.1452 3.3417 52 1 0.8942 -2.4894 3.3636 53 1 -0.3259 -1.8057 2.2388 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093449867.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:49 Heat of formation + Delta-G solvation = -34.761411 kcal Electronic energy + Delta-G solvation = -31626.815926 eV Core-core repulsion = 27692.802351 eV Total energy + Delta-G solvation = -3934.013575 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.46094 -40.33048 -38.55058 -37.43919 -36.11005 -35.63381 -34.63214 -32.83617 -30.15914 -29.27412 -29.14115 -27.94969 -26.91644 -26.00966 -24.38567 -23.42521 -23.22413 -21.87271 -21.24643 -19.92579 -19.45741 -19.06853 -18.37271 -17.80736 -17.21852 -16.86595 -16.36406 -16.32575 -15.84055 -15.55786 -15.44000 -15.05466 -14.75803 -14.64782 -14.49916 -14.36761 -13.99540 -13.74211 -13.58600 -13.45148 -13.34964 -13.20897 -13.16187 -12.95901 -12.85104 -12.63393 -12.43967 -12.41574 -12.25174 -12.11679 -11.98802 -11.81846 -11.73201 -11.72402 -11.63615 -11.40925 -11.16717 -10.90724 -10.85625 -10.63731 -10.37804 -9.65799 -9.22444 -7.98857 -5.32156 1.41532 1.43652 1.51115 1.56387 1.74839 2.51616 2.78123 3.17683 3.22287 3.31556 3.44073 3.60436 3.67973 3.74376 3.86186 3.90584 3.96117 4.03709 4.03873 4.08440 4.27418 4.40197 4.47217 4.50651 4.56019 4.58168 4.64591 4.70116 4.74154 4.75381 4.79087 4.82072 4.84734 4.91419 4.96551 4.99024 5.00943 5.01339 5.03912 5.15543 5.19895 5.20545 5.25770 5.28044 5.31946 5.39146 5.51722 5.59951 5.81624 6.23718 6.72563 6.86430 7.11618 7.24225 7.87890 8.05940 9.21927 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016397 B = 0.003351 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.263254 B = 8354.246177 C = 9223.677157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.085 4.085 3 C -0.164 4.164 4 C 0.154 3.846 5 H 0.106 0.894 6 N -0.628 5.628 7 C 0.563 3.437 8 O -0.569 6.569 9 C -0.170 4.170 10 C -0.110 4.110 11 C -0.141 4.141 12 C -0.148 4.148 13 C 0.116 3.884 14 C -0.078 4.078 15 C -0.089 4.089 16 C 0.082 3.918 17 H 0.042 0.958 18 O -0.582 6.582 19 C 0.149 3.851 20 H 0.059 0.941 21 N -0.746 5.746 22 C -0.227 4.227 23 H 0.064 0.936 24 C -0.061 4.061 25 N -0.982 5.982 26 Si 0.947 3.053 27 H -0.283 1.283 28 H -0.303 1.303 29 H -0.247 1.247 30 C -0.107 4.107 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.125 0.875 43 H 0.120 0.880 44 H 0.086 0.914 45 H 0.109 0.891 46 H 0.094 0.906 47 H 0.091 0.909 48 H 0.068 0.932 49 H 0.383 0.617 50 H 0.366 0.634 51 H 0.256 0.744 52 H 0.089 0.911 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.387 14.347 -3.172 23.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.104 4.104 3 C -0.221 4.221 4 C 0.052 3.948 5 H 0.123 0.877 6 N -0.362 5.362 7 C 0.354 3.646 8 O -0.449 6.449 9 C -0.173 4.173 10 C -0.167 4.167 11 C -0.178 4.178 12 C -0.185 4.185 13 C -0.006 4.006 14 C -0.079 4.079 15 C -0.127 4.127 16 C 0.021 3.979 17 H 0.060 0.940 18 O -0.389 6.389 19 C 0.041 3.959 20 H 0.077 0.923 21 N -0.389 5.389 22 C -0.358 4.358 23 H 0.082 0.918 24 C -0.253 4.253 25 N -0.633 5.633 26 Si 0.775 3.225 27 H -0.209 1.209 28 H -0.230 1.230 29 H -0.171 1.171 30 C -0.146 4.146 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.143 0.857 43 H 0.138 0.862 44 H 0.105 0.895 45 H 0.126 0.874 46 H 0.112 0.888 47 H 0.110 0.890 48 H 0.087 0.913 49 H 0.231 0.769 50 H 0.200 0.800 51 H 0.065 0.935 52 H 0.107 0.893 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 19.081 15.125 -3.744 24.635 hybrid contribution -1.786 -0.040 0.319 1.814 sum 17.296 15.084 -3.425 23.204 Atomic orbital electron populations 1.21975 0.93546 1.02724 1.02666 1.21078 0.96309 0.96430 0.96632 1.22179 1.03884 0.95027 1.01022 1.22873 0.78547 0.94542 0.98864 0.87676 1.50185 1.08407 1.20223 1.57336 1.19687 0.83251 0.84675 0.76987 1.90496 1.85122 1.23750 1.45559 1.21431 0.90161 0.98648 1.07061 1.21358 1.03889 0.91442 1.00022 1.23141 1.00582 1.03933 0.90133 1.23072 0.95054 0.99996 1.00364 1.23401 0.90935 0.87177 0.99082 1.22148 0.94757 0.94766 0.96232 1.21882 0.98868 0.95789 0.96153 1.23349 0.95574 0.83503 0.95476 0.93985 1.86294 1.52241 1.17774 1.82563 1.21965 0.84971 0.96317 0.92692 0.92317 1.42803 1.10243 1.03530 1.82285 1.19039 0.95450 0.84657 1.36661 0.91759 1.25437 0.99162 0.98202 1.02468 1.69872 1.17628 1.20056 1.55716 0.85529 0.79154 0.80420 0.77417 1.20918 1.22990 1.17080 1.22497 0.97666 0.95488 0.98952 0.92057 0.91717 0.91545 0.92375 0.93030 0.90492 0.93184 0.92916 0.89593 0.91291 0.89055 0.85656 0.86171 0.89501 0.87354 0.88823 0.89048 0.91331 0.76853 0.80039 0.93548 0.89276 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.50 71.98 0.61 -2.34 16 2 C -0.09 -1.86 1.90 -10.79 -0.02 -1.88 16 3 C -0.16 -3.79 9.03 71.98 0.65 -3.14 16 4 C 0.15 3.15 3.29 44.65 0.15 3.29 16 5 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 6 N -0.63 -13.27 3.50 -832.10 -2.91 -16.18 16 7 C 0.56 13.60 7.29 87.66 0.64 14.24 16 8 O -0.57 -17.28 13.43 -3.03 -0.04 -17.32 16 9 C -0.17 -3.08 2.32 -52.93 -0.12 -3.21 16 10 C -0.11 -1.71 9.57 71.98 0.69 -1.02 16 11 C -0.14 -1.94 9.95 30.62 0.30 -1.64 16 12 C -0.15 -2.35 9.75 30.62 0.30 -2.05 16 13 C 0.12 2.11 7.46 86.04 0.64 2.76 16 14 C -0.08 -1.62 0.44 -52.00 -0.02 -1.64 16 15 C -0.09 -2.22 4.93 31.03 0.15 -2.07 16 16 C 0.08 2.56 4.01 31.45 0.13 2.69 16 17 H 0.04 1.45 8.04 -2.39 -0.02 1.43 16 18 O -0.58 -19.67 13.23 -148.98 -1.97 -21.64 16 19 C 0.15 4.80 3.25 46.17 0.15 4.95 16 20 H 0.06 2.06 8.05 -2.39 -0.02 2.04 16 21 N -0.75 -30.58 4.96 -317.37 -1.57 -32.16 16 22 C -0.23 -11.73 10.45 84.03 0.88 -10.86 16 23 H 0.06 3.62 8.06 -2.91 -0.02 3.59 16 24 C -0.06 -3.38 5.50 84.86 0.47 -2.91 16 25 N -0.98 -60.23 13.97 21.65 0.30 -59.93 16 26 Si 0.95 42.88 27.74 68.60 1.90 44.78 16 27 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 28 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 29 H -0.25 -9.81 6.52 99.48 0.65 -9.17 16 30 C -0.11 -2.51 5.67 31.57 0.18 -2.34 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 1.35 4.84 -2.38 -0.01 1.33 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.06 1.47 7.24 -2.38 -0.02 1.45 16 35 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.08 2.18 4.46 -2.39 -0.01 2.17 16 37 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 38 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.09 0.98 8.11 -2.39 -0.02 0.96 16 40 H 0.07 1.07 5.47 -2.39 -0.01 1.06 16 41 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.09 1.68 7.87 -2.39 -0.02 1.66 16 45 H 0.11 1.60 8.01 -2.39 -0.02 1.58 16 46 H 0.09 1.70 5.75 -2.39 -0.01 1.68 16 47 H 0.09 2.18 4.39 -2.39 -0.01 2.17 16 48 H 0.07 1.80 7.70 -2.39 -0.02 1.79 16 49 H 0.38 13.11 9.11 -74.05 -0.67 12.43 16 50 H 0.37 14.49 5.58 -92.71 -0.52 13.97 16 51 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 52 H 0.09 1.86 7.96 -2.39 -0.02 1.84 16 53 H 0.08 1.88 7.50 -2.39 -0.02 1.86 16 Total: -1.00 -66.87 400.55 1.15 -65.72 By element: Atomic # 1 Polarization: 44.21 SS G_CDS: -0.33 Total: 43.89 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 5.77 Total: -7.16 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -4.18 Total: -108.26 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: -2.01 Total: -38.96 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.90 Total: 44.78 kcal Total: -66.87 1.15 -65.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093449867.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.955 kcal (2) G-P(sol) polarization free energy of solvation -66.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds