Wall clock time and date at job start Tue Mar 31 2020 21:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47221 * 2 1 4 4 C 1.50691 * 109.47452 * 120.00217 * 2 1 3 5 5 O 1.21283 * 120.00215 * 120.00062 * 4 2 1 6 6 N 1.34785 * 120.00009 * 300.00092 * 4 2 1 7 7 C 1.46493 * 119.99978 * 179.72573 * 6 4 2 8 8 H 1.08996 * 110.56432 * 33.03047 * 7 6 4 9 9 C 1.54848 * 110.62601 * 155.93221 * 7 6 4 10 10 C 1.55845 * 103.45092 * 118.49000 * 9 7 6 11 11 H 1.08999 * 115.56837 * 158.81239 * 10 9 7 12 12 C 1.55848 * 105.05910 * 288.17625 * 10 9 7 13 13 C 1.54852 * 103.44799 * 71.82288 * 12 10 9 14 14 C 1.55842 * 103.44485 * 359.97438 * 13 12 10 15 15 H 1.09008 * 116.12657 * 159.14812 * 14 13 12 16 16 N 1.50239 * 101.05069 * 32.94189 * 14 13 12 17 17 C 1.36937 * 130.84324 * 126.06319 * 16 14 13 18 18 H 1.08004 * 119.99772 * 359.97438 * 17 16 14 19 19 C 1.38817 * 120.00231 * 179.97438 * 17 16 14 20 20 N 1.31611 * 119.99662 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99873 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47139 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46612 * 120.00262 * 21 19 17 24 24 H 1.48499 * 109.47022 * 240.00397 * 21 19 17 25 25 C 1.53004 * 109.46864 * 240.00270 * 2 1 3 26 26 H 1.08993 * 109.47904 * 299.97280 * 25 2 1 27 27 C 1.53092 * 109.48333 * 60.00133 * 25 2 1 28 28 C 1.53176 * 109.16260 * 177.59259 * 27 25 2 29 29 C 1.53176 * 109.03713 * 303.01333 * 28 27 25 30 30 C 1.53097 * 109.15943 * 56.98147 * 29 28 27 31 31 O 1.42893 * 109.41825 * 302.39143 * 30 29 28 32 32 H 1.08995 * 109.47052 * 300.00019 * 1 2 3 33 33 H 1.08996 * 109.47060 * 60.00027 * 1 2 3 34 34 H 1.08998 * 109.47253 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.47127 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.47191 * 300.00206 * 3 2 1 37 37 H 1.08995 * 109.47123 * 60.00024 * 3 2 1 38 38 H 0.97001 * 119.99500 * 359.97438 * 6 4 2 39 39 H 1.09006 * 110.62476 * 236.97594 * 9 7 6 40 40 H 1.08997 * 110.63043 * 359.97438 * 9 7 6 41 41 H 1.09003 * 110.62995 * 190.31356 * 12 10 9 42 42 H 1.09007 * 110.62638 * 313.32909 * 12 10 9 43 43 H 1.09005 * 110.62480 * 241.51121 * 13 12 10 44 44 H 1.08993 * 110.76580 * 118.55665 * 13 12 10 45 45 H 0.97007 * 119.99812 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.51923 * 297.49621 * 27 25 2 47 47 H 1.08997 * 109.52176 * 57.62138 * 27 25 2 48 48 H 1.08995 * 109.54675 * 62.88677 * 28 27 25 49 49 H 1.09006 * 109.54069 * 183.15054 * 28 27 25 50 50 H 1.08994 * 109.52709 * 176.88569 * 29 28 27 51 51 H 1.08999 * 109.52524 * 297.07823 * 29 28 27 52 52 H 1.08998 * 109.47800 * 62.37644 * 30 29 28 53 53 H 1.09004 * 109.48069 * 182.40704 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 2.7297 -1.6965 1.1190 6 7 1.7068 -0.2500 2.4546 7 6 2.1902 -0.9441 3.6506 8 1 3.1738 -1.3778 3.4703 9 6 2.2331 0.0205 4.8612 10 6 1.2393 -0.6243 5.8738 11 1 1.3713 -0.3297 6.9149 12 6 -0.1744 -0.3796 5.2654 13 6 -0.2174 -1.3443 4.0548 14 6 1.1765 -2.0399 4.0962 15 1 1.2533 -2.9926 3.5720 16 7 1.4326 -2.0838 5.5760 17 6 1.7462 -3.1317 6.3999 18 1 1.8439 -4.1276 5.9936 19 6 1.9386 -2.9139 7.7573 20 7 1.8190 -1.7003 8.2525 21 14 2.3657 -4.3435 8.8813 22 1 2.4403 -5.5944 8.0845 23 1 3.6784 -4.0897 9.5277 24 1 1.3185 -4.4825 9.9250 25 6 2.0400 -0.7212 -1.2493 26 1 1.6771 -1.7490 -1.2492 27 6 1.5298 0.0003 -2.4995 28 6 2.0934 -0.6915 -3.7445 29 6 3.6229 -0.7002 -3.6620 30 6 4.0522 -1.3947 -2.3669 31 8 3.4691 -0.7202 -1.2503 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9564 -0.8900 37 1 1.6767 1.9563 0.8899 38 1 1.1494 0.5389 2.5435 39 1 3.2374 0.0630 5.2829 40 1 1.8951 1.0155 4.5716 41 1 -0.9519 -0.6332 5.9861 42 1 -0.2771 0.6545 4.9362 43 1 -0.3413 -0.7886 3.1252 44 1 -1.0161 -2.0766 4.1723 45 1 1.9530 -1.5482 9.2011 46 1 0.4407 -0.0379 -2.5231 47 1 1.8575 1.0397 -2.4793 48 1 1.7248 -1.7162 -3.7906 49 1 1.7795 -0.1492 -4.6365 50 1 4.0308 -1.2394 -4.5169 51 1 3.9938 0.3247 -3.6659 52 1 3.7158 -2.4313 -2.3816 53 1 5.1386 -1.3660 -2.2820 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095428197.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:35 Heat of formation + Delta-G solvation = -66.589871 kcal Electronic energy + Delta-G solvation = -31587.197612 eV Core-core repulsion = 27651.803852 eV Total energy + Delta-G solvation = -3935.393761 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.80996 -40.75019 -39.37915 -36.32581 -35.36626 -34.44277 -34.12582 -31.10991 -30.98468 -30.49546 -29.05815 -28.24500 -26.24495 -25.89944 -25.22725 -23.52840 -22.67474 -21.54178 -21.09159 -20.19264 -20.04868 -18.90014 -17.77728 -17.32359 -17.12923 -16.84348 -16.53623 -16.31803 -15.87661 -15.62749 -15.41341 -15.24605 -15.19603 -14.56187 -14.13838 -14.02800 -13.76241 -13.60673 -13.48604 -13.33214 -13.21166 -13.15725 -12.92104 -12.86884 -12.80453 -12.58176 -12.51909 -12.36629 -12.09410 -11.99004 -11.97237 -11.88784 -11.80049 -11.56946 -11.40983 -11.16012 -11.13172 -11.04347 -10.76578 -10.54417 -10.20826 -9.90885 -8.85540 -7.80619 -5.19721 1.44525 1.45426 1.55120 1.81212 2.24351 2.50101 2.85513 3.32700 3.49937 3.65157 3.69704 3.95090 3.96319 4.00428 4.08074 4.10830 4.13821 4.15982 4.19672 4.33839 4.37909 4.44218 4.48244 4.61270 4.63994 4.69041 4.71685 4.79463 4.81912 4.82877 4.91933 4.97477 4.98510 5.00449 5.03494 5.07369 5.11159 5.13498 5.15208 5.21546 5.26609 5.33539 5.35037 5.38875 5.46866 5.49679 5.57264 5.78783 5.89825 6.27545 6.42107 6.73996 7.05280 7.45110 7.68272 8.54645 9.26364 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022274 B = 0.002857 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.787925 B = 9796.913942 C =10385.000734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.067 4.067 3 C -0.134 4.134 4 C 0.515 3.485 5 O -0.580 6.580 6 N -0.698 5.698 7 C 0.148 3.852 8 H 0.044 0.956 9 C -0.126 4.126 10 C 0.138 3.862 11 H 0.121 0.879 12 C -0.124 4.124 13 C -0.113 4.113 14 C 0.118 3.882 15 H 0.061 0.939 16 N -0.619 5.619 17 C -0.224 4.224 18 H 0.069 0.931 19 C -0.063 4.063 20 N -0.943 5.943 21 Si 0.975 3.025 22 H -0.275 1.275 23 H -0.292 1.292 24 H -0.289 1.289 25 C 0.112 3.888 26 H 0.035 0.965 27 C -0.146 4.146 28 C -0.123 4.123 29 C -0.149 4.149 30 C 0.054 3.946 31 O -0.390 6.390 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.411 0.589 39 H 0.041 0.959 40 H 0.096 0.904 41 H 0.036 0.964 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.042 0.958 45 H 0.249 0.751 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.058 0.942 49 H 0.087 0.913 50 H 0.084 0.916 51 H 0.073 0.927 52 H 0.036 0.964 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.609 10.990 -24.601 27.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.071 4.071 3 C -0.191 4.191 4 C 0.302 3.698 5 O -0.459 6.459 6 N -0.351 5.351 7 C 0.040 3.960 8 H 0.062 0.938 9 C -0.166 4.166 10 C 0.033 3.967 11 H 0.138 0.862 12 C -0.163 4.163 13 C -0.153 4.153 14 C 0.010 3.990 15 H 0.079 0.921 16 N -0.341 5.341 17 C -0.353 4.353 18 H 0.086 0.914 19 C -0.256 4.256 20 N -0.593 5.593 21 Si 0.805 3.195 22 H -0.200 1.200 23 H -0.219 1.219 24 H -0.216 1.216 25 C 0.053 3.947 26 H 0.053 0.947 27 C -0.184 4.184 28 C -0.160 4.160 29 C -0.187 4.187 30 C -0.022 4.022 31 O -0.309 6.309 32 H 0.101 0.899 33 H 0.119 0.881 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.249 0.751 39 H 0.060 0.940 40 H 0.115 0.885 41 H 0.055 0.945 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.114 0.886 47 H 0.104 0.896 48 H 0.077 0.923 49 H 0.106 0.894 50 H 0.103 0.897 51 H 0.091 0.909 52 H 0.054 0.946 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.930 10.225 -24.252 26.611 hybrid contribution 0.459 -1.319 1.009 1.723 sum -3.470 8.906 -23.243 25.132 Atomic orbital electron populations 1.21984 0.89459 1.03146 1.05329 1.20887 0.98549 0.97402 0.90214 1.21856 1.01131 0.91789 1.04355 1.21157 0.79210 0.84005 0.85397 1.90686 1.39373 1.28585 1.87227 1.45957 1.53211 1.31505 1.04422 1.21996 0.96299 0.93495 0.84185 0.93808 1.23134 1.00132 0.98065 0.95275 1.23686 0.91953 0.82050 0.99057 0.86214 1.22928 0.97881 0.98907 0.96573 1.22790 0.95750 0.98211 0.98517 1.23305 0.95330 0.95395 0.84934 0.92121 1.46747 1.80365 1.04823 1.02179 1.19321 1.38767 0.87895 0.89354 0.91356 1.25403 1.03361 0.99166 0.97663 1.69670 1.57444 1.20034 1.12123 0.85044 0.77002 0.78798 0.78699 1.20019 1.21923 1.21592 1.21859 0.81316 0.97398 0.94094 0.94670 1.22335 1.02205 1.00744 0.93086 1.21620 0.94851 1.01094 0.98476 1.22156 0.97106 1.01969 0.97449 1.22633 0.98448 0.94852 0.86300 1.87955 1.19828 1.77074 1.46057 0.89894 0.88120 0.92848 0.93610 0.88774 0.90614 0.75097 0.94036 0.88543 0.94492 0.89240 0.89208 0.93883 0.94110 0.88641 0.89625 0.92327 0.89435 0.89702 0.90864 0.94571 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.02 71.98 0.58 -1.39 16 2 C -0.07 -1.38 0.48 -52.93 -0.03 -1.40 16 3 C -0.13 -2.17 7.88 71.98 0.57 -1.60 16 4 C 0.51 15.90 6.33 87.65 0.56 16.45 16 5 O -0.58 -24.32 14.94 14.39 0.21 -24.10 16 6 N -0.70 -19.96 3.50 -435.02 -1.52 -21.48 16 7 C 0.15 5.71 3.14 46.59 0.15 5.86 16 8 H 0.04 2.04 7.57 -2.39 -0.02 2.02 16 9 C -0.13 -4.82 6.20 32.21 0.20 -4.62 16 10 C 0.14 6.30 4.72 46.23 0.22 6.52 16 11 H 0.12 6.37 5.52 -2.39 -0.01 6.36 16 12 C -0.12 -4.50 6.44 32.21 0.21 -4.29 16 13 C -0.11 -3.96 6.32 32.21 0.20 -3.76 16 14 C 0.12 5.13 5.35 46.21 0.25 5.38 16 15 H 0.06 2.85 8.14 -2.38 -0.02 2.83 16 16 N -0.62 -32.20 2.98 -615.39 -1.84 -34.03 16 17 C -0.22 -13.03 10.59 84.03 0.89 -12.14 16 18 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 19 C -0.06 -3.63 5.50 84.86 0.47 -3.17 16 20 N -0.94 -55.52 10.46 21.65 0.23 -55.30 16 21 Si 0.98 47.09 29.55 68.60 2.03 49.11 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 25 C 0.11 2.48 1.45 30.63 0.04 2.52 16 26 H 0.04 0.94 8.10 -2.39 -0.02 0.92 16 27 C -0.15 -1.99 4.70 30.68 0.14 -1.85 16 28 C -0.12 -1.57 6.03 30.71 0.19 -1.38 16 29 C -0.15 -2.18 6.14 30.69 0.19 -1.99 16 30 C 0.05 1.18 6.84 72.01 0.49 1.68 16 31 O -0.39 -10.77 8.63 -131.56 -1.14 -11.90 16 32 H 0.08 0.93 7.56 -2.39 -0.02 0.91 16 33 H 0.10 0.82 6.49 -2.39 -0.02 0.80 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.04 0.98 7.68 -2.39 -0.02 0.96 16 36 H 0.09 1.01 6.38 -2.38 -0.02 1.00 16 37 H 0.07 0.98 7.56 -2.39 -0.02 0.96 16 38 H 0.41 8.65 6.74 -92.71 -0.62 8.03 16 39 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.10 2.81 7.39 -2.39 -0.02 2.79 16 41 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.09 2.47 7.82 -2.38 -0.02 2.45 16 43 H 0.09 2.42 6.38 -2.38 -0.02 2.41 16 44 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.25 14.21 8.31 -92.70 -0.77 13.44 16 46 H 0.10 0.92 6.57 -2.39 -0.02 0.90 16 47 H 0.09 1.03 6.31 -2.39 -0.02 1.01 16 48 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 50 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 52 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 53 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -75.52 391.29 3.55 -71.97 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: 0.27 Total: 24.92 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 5.31 Total: 0.82 kcal Atomic # 7 Polarization: -107.68 SS G_CDS: -3.13 Total: -110.81 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -0.92 Total: -36.01 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.11 kcal Total: -75.52 3.55 -71.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095428197.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.381 kcal (2) G-P(sol) polarization free energy of solvation -75.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds