Wall clock time and date at job start Tue Mar 31 2020 20:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50701 * 109.47702 * 2 1 4 4 C 1.50697 * 119.99802 * 275.00609 * 3 2 1 5 5 C 1.32990 * 120.00011 * 94.99677 * 3 2 1 6 6 C 1.47104 * 119.99740 * 174.46912 * 5 3 2 7 7 O 1.21610 * 120.00239 * 5.62036 * 6 5 3 8 8 N 1.34775 * 119.99738 * 185.61292 * 6 5 3 9 9 C 1.46505 * 119.99963 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.52070 * 35.08365 * 9 8 6 11 11 C 1.53190 * 109.49826 * 275.00516 * 9 8 6 12 12 N 1.46927 * 108.79808 * 185.38038 * 11 9 8 13 13 C 1.36938 * 120.64075 * 233.63189 * 12 11 9 14 14 H 1.07995 * 120.00302 * 146.65538 * 13 12 11 15 15 C 1.38817 * 119.99927 * 326.64755 * 13 12 11 16 16 N 1.31617 * 120.00078 * 342.13081 * 15 13 12 17 17 Si 1.86800 * 119.99871 * 162.12975 * 15 13 12 18 18 H 1.48494 * 109.47115 * 60.00157 * 17 15 13 19 19 H 1.48501 * 109.47195 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47161 * 299.99983 * 17 15 13 21 21 C 1.46942 * 118.71424 * 53.65556 * 12 11 9 22 22 C 1.53093 * 108.77288 * 306.48718 * 21 12 11 23 23 C 1.53091 * 109.47171 * 294.34760 * 22 21 12 24 24 C 1.53107 * 109.15282 * 297.04034 * 23 22 21 25 25 O 1.42904 * 109.40087 * 302.50457 * 24 23 22 26 26 C 1.42908 * 114.13930 * 61.18061 * 25 24 23 27 27 C 1.53082 * 109.47348 * 174.68000 * 22 21 12 28 28 C 1.52928 * 109.49572 * 54.49879 * 22 21 12 29 29 H 1.09000 * 109.47694 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47113 * 299.99896 * 1 2 3 31 31 H 1.08996 * 109.47109 * 59.99944 * 1 2 3 32 32 H 1.09001 * 109.47273 * 239.99573 * 2 1 3 33 33 H 1.09005 * 109.47605 * 120.00315 * 2 1 3 34 34 H 1.08998 * 109.47285 * 241.57229 * 4 3 2 35 35 H 1.09003 * 109.47562 * 1.57019 * 4 3 2 36 36 H 1.09003 * 109.47688 * 121.56803 * 4 3 2 37 37 H 1.07999 * 120.00031 * 354.47091 * 5 3 2 38 38 H 0.97001 * 120.00643 * 0.02562 * 8 6 5 39 39 H 1.08998 * 109.58357 * 305.17103 * 11 9 8 40 40 H 1.08998 * 109.58045 * 65.44948 * 11 9 8 41 41 H 0.97001 * 120.00289 * 179.97438 * 16 15 13 42 42 H 1.08994 * 109.58667 * 66.27755 * 21 12 11 43 43 H 1.09002 * 109.58288 * 186.70247 * 21 12 11 44 44 H 1.09004 * 109.52085 * 56.94428 * 23 22 21 45 45 H 1.09003 * 109.52312 * 177.13331 * 23 22 21 46 46 H 1.09002 * 109.47822 * 182.53005 * 24 23 22 47 47 H 1.08995 * 109.49785 * 62.49303 * 24 23 22 48 48 H 1.08994 * 109.48011 * 178.84586 * 26 25 24 49 49 H 1.08995 * 109.48713 * 58.79731 * 26 25 24 50 50 H 1.09001 * 109.52467 * 182.86255 * 27 22 21 51 51 H 1.08998 * 109.52416 * 302.99712 * 27 22 21 52 52 H 1.09000 * 109.46416 * 178.78280 * 28 22 21 53 53 H 1.09003 * 109.46200 * 58.82373 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1762 2.1691 -1.3001 5 6 2.3487 2.0142 1.1474 6 6 2.9530 3.3554 1.1395 7 8 3.0696 3.9637 0.0930 8 7 3.3773 3.9100 2.2923 9 6 3.9797 5.2454 2.2845 10 1 3.4903 5.8614 1.5300 11 6 5.4728 5.1310 1.9613 12 7 6.0870 6.4600 2.0842 13 6 6.8136 6.9912 1.0522 14 1 6.8075 8.0573 0.8800 15 6 7.5583 6.1592 0.2273 16 7 7.8580 4.9395 0.6206 17 14 8.1348 6.7709 -1.4409 18 1 9.0005 7.9636 -1.2587 19 1 8.9048 5.6992 -2.1220 20 1 6.9570 7.1358 -2.2685 21 6 5.9069 7.2079 3.3362 22 6 4.4103 7.2970 3.6460 23 6 3.7165 8.1409 2.5735 24 6 4.2733 9.5664 2.6179 25 8 4.0808 10.1107 3.9252 26 6 4.7482 9.3893 4.9627 27 6 4.2105 7.9565 5.0129 28 6 3.8078 5.8915 3.6614 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.2211 2.4416 -1.4488 35 1 1.8456 1.5351 -2.1229 36 1 1.5661 3.0718 -1.2693 37 1 2.1619 1.5115 2.0848 38 1 3.2846 3.4247 3.1270 39 1 5.9466 4.4434 2.6619 40 1 5.5990 4.7606 0.9440 41 1 8.3780 4.3580 0.0441 42 1 6.4180 6.6902 4.1478 43 1 6.3173 8.2116 3.2244 44 1 3.9036 7.7071 1.5912 45 1 2.6436 8.1627 2.7648 46 1 3.7512 10.1835 1.8867 47 1 5.3379 9.5486 2.3847 48 1 4.5681 9.8789 5.9196 49 1 5.8191 9.3688 4.7604 50 1 3.1483 7.9744 5.2569 51 1 4.7494 7.3906 5.7727 52 1 2.7468 5.9537 3.9033 53 1 4.3163 5.2866 4.4122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099581086.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:41 Heat of formation + Delta-G solvation = -61.698031 kcal Electronic energy + Delta-G solvation = -31339.402895 eV Core-core repulsion = 27404.221260 eV Total energy + Delta-G solvation = -3935.181634 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.14071 -39.24679 -37.07983 -35.98244 -34.06109 -33.70734 -31.16012 -30.90773 -30.58256 -29.76445 -27.44610 -26.72840 -25.37938 -24.26268 -23.39065 -22.97308 -21.88002 -20.94739 -19.91654 -18.53078 -17.78178 -16.81904 -16.53880 -15.84824 -15.61755 -15.37771 -14.95753 -14.60683 -14.54213 -14.40297 -14.22348 -14.03865 -13.70839 -13.62770 -13.47727 -12.97348 -12.81183 -12.46155 -12.36488 -12.26194 -12.10529 -12.01766 -11.77470 -11.57743 -11.43838 -11.17395 -11.07449 -11.02960 -10.90301 -10.72404 -10.66842 -10.44082 -10.25441 -10.11649 -10.07201 -9.70001 -9.34629 -9.22604 -9.02859 -8.88753 -8.43964 -8.39238 -6.59953 -5.78545 -3.26210 1.58052 3.40660 3.46924 3.49643 3.61446 3.77076 4.21417 4.51178 4.67734 4.78484 4.99837 5.11433 5.12831 5.15087 5.19096 5.30606 5.40092 5.42790 5.46578 5.54024 5.61412 5.64068 5.65300 5.71650 5.73786 5.81140 5.83553 5.90155 5.96688 5.96947 6.05767 6.06901 6.13431 6.19851 6.23208 6.25852 6.32496 6.45939 6.54398 6.61403 6.67782 6.71534 6.76424 6.81870 6.89319 7.03060 7.26730 7.54519 7.65353 7.82332 8.04719 8.47887 8.77008 9.20608 9.83523 10.42268 11.29032 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009366 B = 0.004156 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2988.786835 B = 6734.874455 C = 8832.164178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.038 4.038 4 C -0.114 4.114 5 C -0.226 4.226 6 C 0.540 3.460 7 O -0.535 6.535 8 N -0.720 5.720 9 C 0.117 3.883 10 H 0.085 0.915 11 C 0.172 3.828 12 N -0.580 5.580 13 C -0.263 4.263 14 H 0.062 0.938 15 C 0.016 3.984 16 N -0.893 5.893 17 Si 0.898 3.102 18 H -0.282 1.282 19 H -0.291 1.291 20 H -0.281 1.281 21 C 0.152 3.848 22 C -0.072 4.072 23 C -0.135 4.135 24 C 0.060 3.940 25 O -0.391 6.391 26 C 0.062 3.938 27 C -0.140 4.140 28 C -0.103 4.103 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.391 0.609 39 H 0.017 0.983 40 H 0.082 0.918 41 H 0.254 0.746 42 H 0.018 0.982 43 H 0.058 0.942 44 H 0.090 0.910 45 H 0.054 0.946 46 H 0.085 0.915 47 H 0.060 0.940 48 H 0.084 0.916 49 H 0.053 0.947 50 H 0.064 0.936 51 H 0.069 0.931 52 H 0.052 0.948 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.827 -4.863 6.109 15.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.133 4.133 3 C -0.040 4.040 4 C -0.170 4.170 5 C -0.247 4.247 6 C 0.329 3.671 7 O -0.414 6.414 8 N -0.370 5.370 9 C 0.012 3.988 10 H 0.103 0.897 11 C 0.045 3.955 12 N -0.302 5.302 13 C -0.392 4.392 14 H 0.080 0.920 15 C -0.184 4.184 16 N -0.535 5.535 17 Si 0.727 3.273 18 H -0.208 1.208 19 H -0.217 1.217 20 H -0.207 1.207 21 C 0.025 3.975 22 C -0.074 4.074 23 C -0.173 4.173 24 C -0.016 4.016 25 O -0.310 6.310 26 C -0.015 4.015 27 C -0.179 4.179 28 C -0.141 4.141 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.138 0.862 38 H 0.224 0.776 39 H 0.035 0.965 40 H 0.100 0.900 41 H 0.064 0.936 42 H 0.036 0.964 43 H 0.076 0.924 44 H 0.108 0.892 45 H 0.073 0.927 46 H 0.103 0.897 47 H 0.079 0.921 48 H 0.103 0.897 49 H 0.072 0.928 50 H 0.082 0.918 51 H 0.087 0.913 52 H 0.070 0.930 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.710 -4.373 5.293 14.446 hybrid contribution 0.496 -0.479 -0.303 0.753 sum -12.214 -4.853 4.991 14.059 Atomic orbital electron populations 1.21711 0.94452 1.01750 1.02416 1.20756 0.96443 0.92905 1.03161 1.22494 0.91060 0.94761 0.95663 1.21010 1.04284 0.99166 0.92579 1.22432 1.07085 0.96686 0.98532 1.18465 0.78569 0.86230 0.83881 1.90804 1.56456 1.63565 1.30558 1.45973 1.62415 1.19434 1.09141 1.21960 0.98004 0.81771 0.97097 0.89679 1.20983 0.85846 0.86982 1.01711 1.43817 1.58225 1.16812 1.11354 1.18965 1.21931 0.92342 1.05968 0.92041 1.25125 0.96705 0.96825 0.99793 1.70027 1.39558 1.08177 1.35753 0.86461 0.78417 0.77783 0.84648 1.20805 1.21670 1.20745 1.21085 0.90552 0.96331 0.89510 1.20990 0.99029 0.93576 0.93819 1.22122 0.98661 0.95381 1.01133 1.22637 1.01002 0.94249 0.83700 1.87837 1.73771 1.53345 1.16080 1.22532 0.96328 0.91775 0.90895 1.22171 1.01440 0.96583 0.97664 1.21673 0.99504 0.96052 0.96907 0.92343 0.92463 0.92349 0.90505 0.90878 0.89553 0.93425 0.90137 0.86194 0.77615 0.96473 0.89970 0.93604 0.96444 0.92406 0.89188 0.92703 0.89672 0.92142 0.89734 0.92847 0.91775 0.91257 0.92962 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.89 37.15 0.37 -0.79 16 2 C -0.10 -0.88 6.02 -27.89 -0.17 -1.05 16 3 C -0.04 -0.48 5.36 -101.17 -0.54 -1.02 16 4 C -0.11 -1.60 8.34 36.00 0.30 -1.30 16 5 C -0.23 -3.05 9.61 -37.81 -0.36 -3.41 16 6 C 0.54 9.44 7.69 -12.66 -0.10 9.35 16 7 O -0.53 -11.43 12.77 5.27 0.07 -11.36 16 8 N -0.72 -11.73 5.08 -54.86 -0.28 -12.01 16 9 C 0.12 2.22 2.27 -67.80 -0.15 2.06 16 10 H 0.09 1.83 5.87 -51.93 -0.30 1.52 16 11 C 0.17 4.06 4.86 -3.71 -0.02 4.05 16 12 N -0.58 -14.02 2.36 -172.37 -0.41 -14.43 16 13 C -0.26 -7.10 9.51 -15.06 -0.14 -7.24 16 14 H 0.06 1.63 7.89 -52.49 -0.41 1.22 16 15 C 0.02 0.45 4.85 -17.43 -0.08 0.36 16 16 N -0.89 -26.21 11.67 55.49 0.65 -25.56 16 17 Si 0.90 22.15 29.59 -169.99 -5.03 17.12 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 21 C 0.15 3.04 4.60 -3.75 -0.02 3.02 16 22 C -0.07 -1.18 0.52 -154.41 -0.08 -1.26 16 23 C -0.14 -2.29 4.37 -26.63 -0.12 -2.41 16 24 C 0.06 0.98 6.57 37.21 0.24 1.22 16 25 O -0.39 -6.24 10.76 -35.23 -0.38 -6.62 16 26 C 0.06 0.85 6.57 37.22 0.24 1.09 16 27 C -0.14 -1.92 4.92 -26.63 -0.13 -2.05 16 28 C -0.10 -1.64 4.19 -26.74 -0.11 -1.75 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.61 8.03 -51.93 -0.42 0.19 16 34 H 0.09 1.46 7.15 -51.93 -0.37 1.09 16 35 H 0.05 0.54 8.00 -51.93 -0.42 0.13 16 36 H 0.08 1.23 7.31 -51.93 -0.38 0.85 16 37 H 0.12 1.27 8.05 -52.49 -0.42 0.84 16 38 H 0.39 5.07 8.59 -40.82 -0.35 4.72 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 2.31 6.51 -51.93 -0.34 1.97 16 41 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 1.16 4.84 -51.93 -0.25 0.91 16 44 H 0.09 1.78 6.10 -51.93 -0.32 1.47 16 45 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.06 1.06 6.48 -51.93 -0.34 0.73 16 48 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.05 0.76 6.73 -51.93 -0.35 0.41 16 50 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 51 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 52 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 53 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 399.41 15.07 6.02 6.02 Total: -1.00 -31.49 399.41 -9.53 -41.02 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -9.30 Total: 6.95 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -0.87 Total: -1.13 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: -0.04 Total: -52.00 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.31 Total: -17.98 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.49 -9.53 -41.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099581086.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.675 kcal (2) G-P(sol) polarization free energy of solvation -31.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds