Wall clock time and date at job start Tue Mar 31 2020 20:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50701 * 109.47702 * 2 1 4 4 C 1.50697 * 119.99802 * 275.00609 * 3 2 1 5 5 C 1.32990 * 120.00011 * 94.99677 * 3 2 1 6 6 C 1.47104 * 119.99740 * 174.46912 * 5 3 2 7 7 O 1.21610 * 120.00239 * 5.62036 * 6 5 3 8 8 N 1.34775 * 119.99738 * 185.61292 * 6 5 3 9 9 C 1.46505 * 119.99963 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.52070 * 35.08365 * 9 8 6 11 11 C 1.53190 * 109.49826 * 275.00516 * 9 8 6 12 12 N 1.46927 * 108.79808 * 185.38038 * 11 9 8 13 13 C 1.36938 * 120.64075 * 233.63189 * 12 11 9 14 14 H 1.07995 * 120.00302 * 146.65538 * 13 12 11 15 15 C 1.38817 * 119.99927 * 326.64755 * 13 12 11 16 16 N 1.31617 * 120.00078 * 342.13081 * 15 13 12 17 17 Si 1.86800 * 119.99871 * 162.12975 * 15 13 12 18 18 H 1.48494 * 109.47115 * 60.00157 * 17 15 13 19 19 H 1.48501 * 109.47195 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47161 * 299.99983 * 17 15 13 21 21 C 1.46942 * 118.71424 * 53.65556 * 12 11 9 22 22 C 1.53093 * 108.77288 * 306.48718 * 21 12 11 23 23 C 1.53091 * 109.47171 * 294.34760 * 22 21 12 24 24 C 1.53107 * 109.15282 * 297.04034 * 23 22 21 25 25 O 1.42904 * 109.40087 * 302.50457 * 24 23 22 26 26 C 1.42908 * 114.13930 * 61.18061 * 25 24 23 27 27 C 1.53082 * 109.47348 * 174.68000 * 22 21 12 28 28 C 1.52928 * 109.49572 * 54.49879 * 22 21 12 29 29 H 1.09000 * 109.47694 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47113 * 299.99896 * 1 2 3 31 31 H 1.08996 * 109.47109 * 59.99944 * 1 2 3 32 32 H 1.09001 * 109.47273 * 239.99573 * 2 1 3 33 33 H 1.09005 * 109.47605 * 120.00315 * 2 1 3 34 34 H 1.08998 * 109.47285 * 241.57229 * 4 3 2 35 35 H 1.09003 * 109.47562 * 1.57019 * 4 3 2 36 36 H 1.09003 * 109.47688 * 121.56803 * 4 3 2 37 37 H 1.07999 * 120.00031 * 354.47091 * 5 3 2 38 38 H 0.97001 * 120.00643 * 0.02562 * 8 6 5 39 39 H 1.08998 * 109.58357 * 305.17103 * 11 9 8 40 40 H 1.08998 * 109.58045 * 65.44948 * 11 9 8 41 41 H 0.97001 * 120.00289 * 179.97438 * 16 15 13 42 42 H 1.08994 * 109.58667 * 66.27755 * 21 12 11 43 43 H 1.09002 * 109.58288 * 186.70247 * 21 12 11 44 44 H 1.09004 * 109.52085 * 56.94428 * 23 22 21 45 45 H 1.09003 * 109.52312 * 177.13331 * 23 22 21 46 46 H 1.09002 * 109.47822 * 182.53005 * 24 23 22 47 47 H 1.08995 * 109.49785 * 62.49303 * 24 23 22 48 48 H 1.08994 * 109.48011 * 178.84586 * 26 25 24 49 49 H 1.08995 * 109.48713 * 58.79731 * 26 25 24 50 50 H 1.09001 * 109.52467 * 182.86255 * 27 22 21 51 51 H 1.08998 * 109.52416 * 302.99712 * 27 22 21 52 52 H 1.09000 * 109.46416 * 178.78280 * 28 22 21 53 53 H 1.09003 * 109.46200 * 58.82373 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1762 2.1691 -1.3001 5 6 2.3487 2.0142 1.1474 6 6 2.9530 3.3554 1.1395 7 8 3.0696 3.9637 0.0930 8 7 3.3773 3.9100 2.2923 9 6 3.9797 5.2454 2.2845 10 1 3.4903 5.8614 1.5300 11 6 5.4728 5.1310 1.9613 12 7 6.0870 6.4600 2.0842 13 6 6.8136 6.9912 1.0522 14 1 6.8075 8.0573 0.8800 15 6 7.5583 6.1592 0.2273 16 7 7.8580 4.9395 0.6206 17 14 8.1348 6.7709 -1.4409 18 1 9.0005 7.9636 -1.2587 19 1 8.9048 5.6992 -2.1220 20 1 6.9570 7.1358 -2.2685 21 6 5.9069 7.2079 3.3362 22 6 4.4103 7.2970 3.6460 23 6 3.7165 8.1409 2.5735 24 6 4.2733 9.5664 2.6179 25 8 4.0808 10.1107 3.9252 26 6 4.7482 9.3893 4.9627 27 6 4.2105 7.9565 5.0129 28 6 3.8078 5.8915 3.6614 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.2211 2.4416 -1.4488 35 1 1.8456 1.5351 -2.1229 36 1 1.5661 3.0718 -1.2693 37 1 2.1619 1.5115 2.0848 38 1 3.2846 3.4247 3.1270 39 1 5.9466 4.4434 2.6619 40 1 5.5990 4.7606 0.9440 41 1 8.3780 4.3580 0.0441 42 1 6.4180 6.6902 4.1478 43 1 6.3173 8.2116 3.2244 44 1 3.9036 7.7071 1.5912 45 1 2.6436 8.1627 2.7648 46 1 3.7512 10.1835 1.8867 47 1 5.3379 9.5486 2.3847 48 1 4.5681 9.8789 5.9196 49 1 5.8191 9.3688 4.7604 50 1 3.1483 7.9744 5.2569 51 1 4.7494 7.3906 5.7727 52 1 2.7468 5.9537 3.9033 53 1 4.3163 5.2866 4.4122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099581086.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:40 Heat of formation + Delta-G solvation = -81.504479 kcal Electronic energy + Delta-G solvation = -31340.261767 eV Core-core repulsion = 27404.221260 eV Total energy + Delta-G solvation = -3936.040506 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.55838 -40.58996 -38.48218 -37.07671 -35.75400 -35.26819 -32.86802 -32.01506 -31.92200 -31.14948 -28.65800 -28.21601 -27.34747 -25.27559 -24.61192 -24.25207 -23.62070 -22.24611 -21.45149 -19.71202 -19.25693 -18.58377 -17.92950 -17.28902 -16.92174 -16.74032 -16.51458 -16.03875 -15.93375 -15.56699 -15.48908 -15.42433 -15.26430 -14.97674 -14.76297 -14.26785 -14.23741 -14.01891 -13.71593 -13.50375 -13.43411 -13.07007 -13.03063 -12.97192 -12.79173 -12.62928 -12.49521 -12.39759 -12.27570 -12.21547 -12.13442 -12.05270 -11.86225 -11.74054 -11.63248 -11.09003 -10.86948 -10.60679 -10.55221 -10.26444 -10.17890 -9.82070 -8.62727 -7.91447 -5.41053 0.45809 1.37805 1.43246 1.47405 2.25282 2.44796 2.48566 3.03151 3.24923 3.61753 3.71017 3.76963 3.87010 3.88951 3.95233 4.19752 4.21183 4.30241 4.34074 4.36237 4.39805 4.41113 4.45294 4.53320 4.59865 4.64210 4.74648 4.77247 4.81883 4.84423 4.87421 4.90644 4.97563 5.02974 5.06207 5.09987 5.12468 5.14652 5.23361 5.27636 5.31742 5.38171 5.42316 5.46437 5.51563 5.57441 5.61469 5.65706 5.75820 6.32754 6.36444 6.74936 7.10961 7.43978 7.81772 8.35145 9.12541 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009366 B = 0.004156 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2988.786835 B = 6734.874455 C = 8832.164178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.030 4.030 4 C -0.113 4.113 5 C -0.236 4.236 6 C 0.528 3.472 7 O -0.585 6.585 8 N -0.710 5.710 9 C 0.134 3.866 10 H 0.057 0.943 11 C 0.188 3.812 12 N -0.596 5.596 13 C -0.263 4.263 14 H 0.062 0.938 15 C -0.039 4.039 16 N -0.926 5.926 17 Si 0.952 3.048 18 H -0.267 1.267 19 H -0.294 1.294 20 H -0.286 1.286 21 C 0.152 3.848 22 C -0.066 4.066 23 C -0.130 4.130 24 C 0.066 3.934 25 O -0.396 6.396 26 C 0.055 3.945 27 C -0.131 4.131 28 C -0.094 4.094 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.158 0.842 38 H 0.411 0.589 39 H -0.003 1.003 40 H 0.028 0.972 41 H 0.247 0.753 42 H 0.016 0.984 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.070 0.930 46 H 0.096 0.904 47 H 0.039 0.961 48 H 0.116 0.884 49 H 0.044 0.956 50 H 0.083 0.917 51 H 0.088 0.912 52 H 0.082 0.918 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.052 -5.433 8.449 18.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.128 4.128 3 C -0.032 4.032 4 C -0.169 4.169 5 C -0.256 4.256 6 C 0.319 3.681 7 O -0.468 6.468 8 N -0.361 5.361 9 C 0.027 3.973 10 H 0.075 0.925 11 C 0.061 3.939 12 N -0.318 5.318 13 C -0.393 4.393 14 H 0.079 0.921 15 C -0.235 4.235 16 N -0.570 5.570 17 Si 0.781 3.219 18 H -0.192 1.192 19 H -0.220 1.220 20 H -0.212 1.212 21 C 0.027 3.973 22 C -0.069 4.069 23 C -0.167 4.167 24 C -0.011 4.011 25 O -0.315 6.315 26 C -0.022 4.022 27 C -0.169 4.169 28 C -0.132 4.132 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.176 0.824 38 H 0.247 0.753 39 H 0.015 0.985 40 H 0.047 0.953 41 H 0.056 0.944 42 H 0.034 0.966 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.089 0.911 46 H 0.114 0.886 47 H 0.057 0.943 48 H 0.134 0.866 49 H 0.062 0.938 50 H 0.101 0.899 51 H 0.106 0.894 52 H 0.101 0.899 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.952 -4.937 7.693 17.525 hybrid contribution 1.186 -0.275 -1.050 1.608 sum -13.767 -5.212 6.643 16.149 Atomic orbital electron populations 1.21708 0.93157 1.03005 1.02224 1.20827 0.97352 0.90127 1.04502 1.22825 0.89588 0.96380 0.94358 1.20914 1.01640 0.99337 0.95013 1.22504 1.07835 0.94661 1.00622 1.19291 0.78064 0.87516 0.83242 1.90791 1.58483 1.65151 1.32326 1.45824 1.61595 1.18657 1.10030 1.21459 0.94179 0.83074 0.98555 0.92493 1.20654 0.89018 0.86333 0.97944 1.43995 1.58259 1.17040 1.12536 1.19268 1.20921 0.92450 1.06674 0.92053 1.25802 0.97730 0.97196 1.02812 1.70159 1.41043 1.09257 1.36575 0.85574 0.77814 0.77571 0.80975 1.19214 1.22043 1.21240 1.21201 0.93455 0.95240 0.87366 1.20902 0.95884 0.94360 0.95727 1.22021 0.99658 0.95641 0.99411 1.22514 0.99752 0.94143 0.84658 1.87839 1.73963 1.53765 1.15954 1.22764 0.95720 0.92175 0.91512 1.22127 1.02970 0.96189 0.95623 1.21634 1.01529 0.95382 0.94665 0.90347 0.92430 0.92867 0.89582 0.89175 0.93222 0.90702 0.91991 0.82423 0.75252 0.98500 0.95311 0.94390 0.96599 0.92871 0.92868 0.91129 0.88589 0.94257 0.86581 0.93789 0.89851 0.89393 0.89940 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.89 71.98 0.71 -1.14 16 2 C -0.09 -1.42 6.02 29.85 0.18 -1.24 16 3 C -0.03 -0.72 5.36 -17.62 -0.09 -0.81 16 4 C -0.11 -3.28 8.34 71.23 0.59 -2.69 16 5 C -0.24 -6.10 9.61 23.43 0.23 -5.88 16 6 C 0.53 18.96 7.69 86.57 0.67 19.63 16 7 O -0.59 -26.77 12.77 -4.06 -0.05 -26.82 16 8 N -0.71 -23.12 5.08 -445.72 -2.26 -25.38 16 9 C 0.13 5.17 2.27 45.07 0.10 5.27 16 10 H 0.06 2.56 5.87 -2.39 -0.01 2.55 16 11 C 0.19 9.35 4.86 86.36 0.42 9.77 16 12 N -0.60 -29.98 2.36 -699.26 -1.65 -31.63 16 13 C -0.26 -14.83 9.51 84.03 0.80 -14.03 16 14 H 0.06 3.39 7.89 -2.91 -0.02 3.37 16 15 C -0.04 -2.26 4.85 84.86 0.41 -1.84 16 16 N -0.93 -57.28 11.67 21.65 0.25 -57.03 16 17 Si 0.95 47.50 29.59 68.60 2.03 49.53 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.29 -14.72 7.11 99.48 0.71 -14.02 16 20 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 21 C 0.15 6.13 4.60 86.33 0.40 6.53 16 22 C -0.07 -2.08 0.52 -52.12 -0.03 -2.11 16 23 C -0.13 -4.31 4.37 30.66 0.13 -4.18 16 24 C 0.07 2.10 6.57 72.02 0.47 2.57 16 25 O -0.40 -11.73 10.76 -148.98 -1.60 -13.34 16 26 C 0.05 1.34 6.57 72.02 0.47 1.81 16 27 C -0.13 -3.10 4.92 30.66 0.15 -2.95 16 28 C -0.09 -2.80 4.19 30.59 0.13 -2.67 16 29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 1.16 8.03 -2.38 -0.02 1.14 16 34 H 0.05 1.82 7.15 -2.39 -0.02 1.80 16 35 H 0.07 1.69 8.00 -2.39 -0.02 1.67 16 36 H 0.06 2.02 7.31 -2.39 -0.02 2.00 16 37 H 0.16 2.82 8.05 -2.91 -0.02 2.80 16 38 H 0.41 9.95 8.59 -92.71 -0.80 9.15 16 39 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 40 H 0.03 1.72 6.51 -2.39 -0.02 1.71 16 41 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 42 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.05 2.17 4.84 -2.39 -0.01 2.16 16 44 H 0.05 2.18 6.10 -2.38 -0.01 2.17 16 45 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 47 H 0.04 1.41 6.48 -2.39 -0.02 1.39 16 48 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 49 H 0.04 1.17 6.73 -2.39 -0.02 1.15 16 50 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 51 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 52 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 53 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -74.92 399.41 2.55 -72.36 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 0.09 Total: 26.26 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 5.75 Total: 6.03 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -3.66 Total: -114.03 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -1.66 Total: -40.16 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -74.92 2.55 -72.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099581086.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.140 kcal (2) G-P(sol) polarization free energy of solvation -74.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds