Wall clock time and date at job start Tue Mar 31 2020 20:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50691 * 109.47212 * 2 1 4 4 C 1.50710 * 120.00201 * 264.94924 * 3 2 1 5 5 C 1.32997 * 120.00142 * 84.95743 * 3 2 1 6 6 C 1.47093 * 119.99647 * 352.73507 * 5 3 2 7 7 O 1.21617 * 120.00452 * 353.22952 * 6 5 3 8 8 N 1.34776 * 120.00083 * 173.22634 * 6 5 3 9 9 C 1.47152 * 120.98967 * 355.19734 * 8 6 5 10 10 C 1.53297 * 108.37515 * 230.57675 * 9 8 6 11 11 O 1.42965 * 109.23340 * 307.65127 * 10 9 8 12 12 C 1.42900 * 114.20971 * 62.48086 * 11 10 9 13 13 C 1.52954 * 109.57096 * 177.75240 * 12 11 10 14 14 C 1.53003 * 109.50812 * 299.58016 * 13 12 11 15 15 C 1.53011 * 109.46343 * 300.04987 * 14 13 12 16 16 N 1.46499 * 109.47266 * 180.02562 * 15 14 13 17 17 C 1.36935 * 119.99500 * 85.03400 * 16 15 14 18 18 H 1.08002 * 120.00327 * 359.97438 * 17 16 15 19 19 C 1.38820 * 119.99789 * 179.97438 * 17 16 15 20 20 N 1.31616 * 119.99737 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00158 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47061 * 89.99906 * 21 19 17 23 23 H 1.48497 * 109.47348 * 210.00262 * 21 19 17 24 24 H 1.48500 * 109.47172 * 330.00395 * 21 19 17 25 25 C 1.53002 * 109.44162 * 60.06666 * 15 14 13 26 26 C 1.52950 * 109.58157 * 57.50549 * 12 11 10 27 27 C 1.47156 * 120.99330 * 175.17188 * 8 6 5 28 28 H 1.09002 * 109.47307 * 59.99739 * 1 2 3 29 29 H 1.09003 * 109.47785 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47173 * 300.00096 * 1 2 3 31 31 H 1.09005 * 109.46687 * 240.00024 * 2 1 3 32 32 H 1.08995 * 109.47015 * 120.00495 * 2 1 3 33 33 H 1.08997 * 109.46909 * 270.00390 * 4 3 2 34 34 H 1.09000 * 109.46497 * 30.00236 * 4 3 2 35 35 H 1.09001 * 109.47125 * 150.00220 * 4 3 2 36 36 H 1.07998 * 120.00185 * 172.74022 * 5 3 2 37 37 H 1.09001 * 109.68654 * 110.85457 * 9 8 6 38 38 H 1.09003 * 109.68263 * 350.29380 * 9 8 6 39 39 H 1.09007 * 109.50746 * 67.57310 * 10 9 8 40 40 H 1.08999 * 109.51350 * 187.72167 * 10 9 8 41 41 H 1.09005 * 109.46116 * 59.58641 * 13 12 11 42 42 H 1.08999 * 109.46831 * 179.56234 * 13 12 11 43 43 H 1.09007 * 109.47061 * 180.02562 * 14 13 12 44 44 H 1.08993 * 109.47508 * 60.05499 * 14 13 12 45 45 H 1.08994 * 109.47569 * 300.07725 * 15 14 13 46 46 H 0.96996 * 120.00122 * 265.02537 * 16 15 14 47 47 H 0.97004 * 119.99732 * 179.97438 * 20 19 17 48 48 H 1.08996 * 109.47047 * 179.97438 * 25 15 14 49 49 H 1.08998 * 109.46731 * 59.94952 * 25 15 14 50 50 H 1.09005 * 109.45947 * 180.43961 * 26 12 11 51 51 H 1.08994 * 109.46689 * 300.41414 * 26 12 11 52 52 H 1.08994 * 109.67702 * 9.80262 * 27 8 6 53 53 H 1.09002 * 109.67914 * 249.26637 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3919 2.0929 -1.3001 5 6 2.1586 2.0814 1.1473 6 6 1.6599 1.4870 2.3970 7 8 1.0240 0.4508 2.3662 8 7 1.9078 2.0906 3.5762 9 6 2.7623 3.2863 3.6505 10 6 3.8213 3.0569 4.7348 11 8 3.1756 2.6627 5.9479 12 6 2.4587 1.4299 5.8563 13 6 1.8598 1.0829 7.2203 14 6 2.9831 0.9325 8.2482 15 6 3.9312 -0.1847 7.8076 16 7 5.0064 -0.3293 8.7920 17 6 4.8176 -1.1076 9.9027 18 1 3.8759 -1.6145 10.0533 19 6 5.8367 -1.2451 10.8353 20 7 6.9845 -0.6278 10.6516 21 14 5.5789 -2.3061 12.3509 22 1 5.9976 -3.7001 12.0562 23 1 6.3914 -1.7719 13.4732 24 1 4.1427 -2.2900 12.7280 25 6 4.5318 0.1651 6.4446 26 6 3.4094 0.3156 5.4158 27 6 1.3316 1.5739 4.8278 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.4436 1.9136 -1.5230 34 1 1.7759 1.6858 -2.1020 35 1 2.2160 3.1653 -1.2155 36 1 2.6271 3.0544 1.1614 37 1 2.1563 4.1553 3.9071 38 1 3.2502 3.4492 2.6895 39 1 4.5057 2.2711 4.4148 40 1 4.3774 3.9794 4.9016 41 1 1.1848 1.8794 7.5338 42 1 1.3069 0.1465 7.1466 43 1 2.5556 0.6848 9.2199 44 1 3.5352 1.8693 8.3228 45 1 3.3788 -1.1212 7.7317 46 1 5.8521 0.1261 8.6569 47 1 7.6964 -0.7235 11.3034 48 1 5.2077 -0.6303 6.1304 49 1 5.0833 1.1022 6.5203 50 1 2.8589 -0.6221 5.3391 51 1 3.8374 0.5659 4.4452 52 1 0.8734 0.6017 4.6470 53 1 0.5808 2.2703 5.2012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105470854.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:21 Heat of formation + Delta-G solvation = -73.919792 kcal Electronic energy + Delta-G solvation = -30850.240742 eV Core-core repulsion = 26914.529132 eV Total energy + Delta-G solvation = -3935.711610 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.91333 -40.38557 -38.17822 -36.89549 -35.82420 -35.31042 -33.37184 -31.89248 -31.84717 -31.07280 -29.60404 -28.70992 -26.75480 -25.24631 -24.53508 -24.34586 -23.55239 -22.10975 -20.87539 -20.42525 -19.13377 -18.98413 -18.41133 -17.27412 -17.03482 -16.73879 -16.55182 -16.18997 -15.94966 -15.54696 -15.46109 -15.25592 -15.06061 -14.71664 -14.52763 -14.38857 -14.16288 -13.89426 -13.71151 -13.66585 -13.25831 -13.17155 -13.10926 -12.94751 -12.86159 -12.79147 -12.68999 -12.60827 -12.21631 -12.13619 -12.00021 -11.93726 -11.92502 -11.74335 -11.54321 -11.42334 -11.05634 -10.93193 -10.67513 -10.47352 -10.06327 -9.37593 -8.98941 -7.93363 -5.21419 0.42020 1.46036 1.47926 1.56282 1.95241 2.29953 2.56145 2.78273 3.39362 3.50805 3.63940 3.70622 3.79292 3.81429 3.92794 4.01864 4.16523 4.19653 4.27930 4.32707 4.34106 4.45475 4.50244 4.53817 4.55847 4.59338 4.62457 4.67993 4.70134 4.73965 4.75147 4.85350 4.86312 4.90800 4.99385 5.00214 5.04104 5.09951 5.10601 5.21174 5.25583 5.31221 5.39799 5.46830 5.49436 5.52757 5.54235 5.68571 5.72169 6.28519 6.31772 6.44845 7.23052 7.34381 8.11521 8.35278 9.30482 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021633 B = 0.002446 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.985636 B =11444.760767 C =11708.827000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.100 4.100 3 C -0.021 4.021 4 C -0.124 4.124 5 C -0.249 4.249 6 C 0.537 3.463 7 O -0.566 6.566 8 N -0.613 5.613 9 C 0.077 3.923 10 C 0.035 3.965 11 O -0.378 6.378 12 C 0.119 3.881 13 C -0.095 4.095 14 C -0.116 4.116 15 C 0.175 3.825 16 N -0.738 5.738 17 C -0.236 4.236 18 H 0.073 0.927 19 C -0.079 4.079 20 N -0.971 5.971 21 Si 0.972 3.028 22 H -0.288 1.288 23 H -0.295 1.295 24 H -0.270 1.270 25 C -0.105 4.105 26 C -0.121 4.121 27 C 0.097 3.903 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.155 0.845 37 H 0.088 0.912 38 H 0.121 0.879 39 H 0.051 0.949 40 H 0.124 0.876 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.041 0.959 44 H 0.048 0.952 45 H 0.036 0.964 46 H 0.371 0.629 47 H 0.250 0.750 48 H 0.048 0.952 49 H 0.057 0.943 50 H 0.067 0.933 51 H 0.067 0.933 52 H 0.088 0.912 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.075 10.980 -26.332 30.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.137 4.137 3 C -0.023 4.023 4 C -0.181 4.181 5 C -0.269 4.269 6 C 0.331 3.669 7 O -0.447 6.447 8 N -0.346 5.346 9 C -0.045 4.045 10 C -0.042 4.042 11 O -0.297 6.297 12 C 0.079 3.921 13 C -0.133 4.133 14 C -0.156 4.156 15 C 0.067 3.933 16 N -0.377 5.377 17 C -0.368 4.368 18 H 0.091 0.909 19 C -0.271 4.271 20 N -0.622 5.622 21 Si 0.801 3.199 22 H -0.215 1.215 23 H -0.222 1.222 24 H -0.195 1.195 25 C -0.143 4.143 26 C -0.159 4.159 27 C -0.026 4.026 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.172 0.828 37 H 0.107 0.893 38 H 0.138 0.862 39 H 0.069 0.931 40 H 0.142 0.858 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.202 0.798 47 H 0.059 0.941 48 H 0.066 0.934 49 H 0.075 0.925 50 H 0.086 0.914 51 H 0.086 0.914 52 H 0.107 0.893 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.495 10.434 -26.049 30.717 hybrid contribution 0.637 -0.665 1.164 1.484 sum -11.859 9.769 -24.885 29.246 Atomic orbital electron populations 1.21546 0.94339 1.01493 1.01292 1.20829 0.97081 0.93459 1.02329 1.22870 0.88822 0.94902 0.95665 1.21067 1.03202 1.01045 0.92742 1.22516 1.09506 1.03806 0.91061 1.19098 0.79737 0.83514 0.84558 1.90742 1.42600 1.24341 1.87059 1.48089 1.50135 1.30010 1.06323 1.22651 0.92957 0.87212 1.01716 1.23197 0.94417 1.01724 0.84882 1.88025 1.68654 1.38675 1.34301 1.21668 0.90873 0.84360 0.95246 1.21461 0.97445 1.02355 0.92070 1.21906 0.96763 0.99337 0.97623 1.20420 0.89140 0.95537 0.88230 1.42636 1.14303 1.57565 1.23220 1.19616 0.98439 1.20247 0.98475 0.90862 1.25553 0.96200 1.02954 1.02383 1.69826 1.05256 1.49172 1.37967 0.85160 0.77491 0.78131 0.79138 1.21484 1.22181 1.19471 1.21538 0.97649 1.00664 0.94492 1.21886 0.96941 0.99015 0.98075 1.22147 0.95479 1.01416 0.83553 0.92330 0.93176 0.93230 0.90622 0.91622 0.89118 0.90052 0.89680 0.82802 0.89335 0.86158 0.93083 0.85800 0.90146 0.89833 0.93976 0.93323 0.94631 0.79799 0.94117 0.93367 0.92461 0.91428 0.91426 0.89317 0.89958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 9.31 71.98 0.67 -1.74 16 2 C -0.10 -1.79 5.34 29.85 0.16 -1.63 16 3 C -0.02 -0.29 5.36 -17.62 -0.09 -0.39 16 4 C -0.12 -0.87 10.02 71.24 0.71 -0.15 16 5 C -0.25 -3.79 8.82 23.43 0.21 -3.58 16 6 C 0.54 11.82 7.47 86.57 0.65 12.47 16 7 O -0.57 -15.89 10.49 -4.08 -0.04 -15.93 16 8 N -0.61 -12.28 2.55 -821.69 -2.09 -14.37 16 9 C 0.08 1.08 6.49 86.35 0.56 1.64 16 10 C 0.03 0.65 6.60 72.08 0.48 1.12 16 11 O -0.38 -9.87 8.93 -148.98 -1.33 -11.20 16 12 C 0.12 3.07 0.68 -10.74 -0.01 3.06 16 13 C -0.09 -2.66 4.94 30.58 0.15 -2.51 16 14 C -0.12 -4.33 5.36 30.60 0.16 -4.17 16 15 C 0.17 7.28 2.77 45.00 0.12 7.41 16 16 N -0.74 -38.99 5.12 -322.92 -1.65 -40.64 16 17 C -0.24 -13.55 9.93 84.04 0.83 -12.71 16 18 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 19 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 20 N -0.97 -61.05 13.06 21.65 0.28 -60.76 16 21 Si 0.97 47.40 29.55 68.60 2.03 49.43 16 22 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 23 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 24 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 25 C -0.11 -3.73 5.25 30.60 0.16 -3.57 16 26 C -0.12 -3.46 4.19 30.58 0.13 -3.33 16 27 C 0.10 2.21 5.31 86.34 0.46 2.67 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.05 1.16 6.09 -2.39 -0.01 1.15 16 31 H 0.08 1.07 8.09 -2.38 -0.02 1.05 16 32 H 0.07 1.58 6.13 -2.39 -0.01 1.57 16 33 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.08 0.47 8.12 -2.39 -0.02 0.45 16 35 H 0.08 0.39 8.07 -2.39 -0.02 0.37 16 36 H 0.15 1.39 6.16 -2.91 -0.02 1.37 16 37 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.12 1.02 5.59 -2.39 -0.01 1.01 16 39 H 0.05 1.04 6.26 -2.38 -0.01 1.03 16 40 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 42 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 44 H 0.05 1.95 7.70 -2.39 -0.02 1.94 16 45 H 0.04 1.53 8.08 -2.39 -0.02 1.51 16 46 H 0.37 21.07 7.80 -92.71 -0.72 20.34 16 47 H 0.25 15.21 8.31 -92.70 -0.77 14.44 16 48 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 49 H 0.06 2.09 7.70 -2.39 -0.02 2.07 16 50 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 51 H 0.07 1.83 6.11 -2.39 -0.01 1.82 16 52 H 0.09 2.25 7.05 -2.39 -0.02 2.23 16 53 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -72.22 399.01 3.18 -69.05 By element: Atomic # 1 Polarization: 33.88 SS G_CDS: 0.17 Total: 34.05 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 5.82 Total: -9.62 kcal Atomic # 7 Polarization: -112.32 SS G_CDS: -3.46 Total: -115.78 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -1.37 Total: -27.13 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -72.22 3.18 -69.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105470854.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.875 kcal (2) G-P(sol) polarization free energy of solvation -72.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds