Wall clock time and date at job start Tue Mar 31 2020 21:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50711 * 119.99795 * 2 1 4 4 C 1.53001 * 109.47111 * 124.99833 * 3 2 1 5 5 C 1.50694 * 109.46995 * 179.97438 * 4 3 2 6 6 O 1.21282 * 120.00422 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00127 * 180.02562 * 5 4 3 8 8 C 1.47857 * 134.35527 * 354.41522 * 7 5 4 9 9 C 1.52536 * 85.65005 * 156.41262 * 8 7 5 10 10 C 1.53536 * 116.18728 * 141.07512 * 9 8 7 11 11 C 1.54512 * 104.03765 * 93.20703 * 10 9 8 12 12 H 1.09002 * 110.01246 * 141.49899 * 11 10 9 13 13 O 1.42900 * 110.04933 * 262.85938 * 11 10 9 14 14 C 1.53975 * 106.70258 * 22.19037 * 11 10 9 15 15 H 1.08995 * 110.00852 * 240.64853 * 14 11 10 16 16 N 1.46498 * 110.01176 * 119.30974 * 14 11 10 17 17 C 1.36942 * 119.99627 * 86.45606 * 16 14 11 18 18 H 1.08003 * 120.00173 * 359.97438 * 17 16 14 19 19 C 1.38811 * 119.99674 * 180.02562 * 17 16 14 20 20 N 1.31616 * 119.99605 * 180.02562 * 19 17 16 21 21 Si 1.86793 * 120.00201 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47310 * 270.00296 * 21 19 17 23 23 H 1.48508 * 109.47120 * 150.00109 * 21 19 17 24 24 H 1.48505 * 109.47131 * 30.00279 * 21 19 17 25 25 C 1.53528 * 116.18880 * 264.62797 * 9 8 7 26 26 C 1.47853 * 134.36127 * 174.44084 * 7 5 4 27 27 H 1.08999 * 113.84290 * 89.40608 * 26 7 5 28 28 C 1.52998 * 113.84553 * 317.76546 * 26 7 5 29 29 C 1.53003 * 109.46765 * 82.94130 * 28 26 7 30 30 C 1.53000 * 109.47224 * 202.94164 * 28 26 7 31 31 H 1.08003 * 119.99595 * 179.97438 * 1 2 3 32 32 H 1.07997 * 120.00243 * 359.97438 * 1 2 3 33 33 H 1.07997 * 120.00243 * 180.02562 * 2 1 3 34 34 H 1.08998 * 109.46871 * 4.99858 * 3 2 1 35 35 H 1.08998 * 109.47125 * 245.00068 * 3 2 1 36 36 H 1.09005 * 109.46638 * 59.99616 * 4 3 2 37 37 H 1.09004 * 109.46886 * 300.00163 * 4 3 2 38 38 H 1.08998 * 113.84803 * 42.22805 * 8 7 5 39 39 H 1.09007 * 113.95926 * 270.60497 * 8 7 5 40 40 H 1.08998 * 110.51220 * 334.56530 * 10 9 8 41 41 H 1.09004 * 110.51387 * 211.84624 * 10 9 8 42 42 H 0.96703 * 113.99583 * 178.74374 * 13 11 10 43 43 H 0.96994 * 120.00602 * 266.45361 * 16 14 11 44 44 H 0.97002 * 119.99787 * 179.97438 * 20 19 17 45 45 H 1.08996 * 110.51535 * 148.15707 * 25 9 8 46 46 H 1.08998 * 110.51275 * 25.42854 * 25 9 8 47 47 H 1.09001 * 109.47238 * 322.94240 * 28 26 7 48 48 H 1.08995 * 109.47330 * 65.19744 * 29 28 26 49 49 H 1.09000 * 109.46689 * 185.19244 * 29 28 26 50 50 H 1.08996 * 109.46875 * 305.18724 * 29 28 26 51 51 H 1.09003 * 109.47115 * 172.39720 * 30 28 26 52 52 H 1.09002 * 109.47132 * 292.39633 * 30 28 26 53 53 H 1.08998 * 109.47113 * 52.39944 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3333 1.1817 5 6 3.7889 2.6381 1.1813 6 8 3.5703 3.4645 0.3209 7 7 4.7061 2.8868 2.1370 8 6 5.1421 2.1798 3.3602 9 6 6.4512 2.9453 3.1962 10 6 7.1039 3.4562 4.4886 11 6 8.0902 2.3330 4.8797 12 1 9.0091 2.7648 5.2762 13 8 7.4936 1.4744 5.8539 14 6 8.3919 1.5415 3.5939 15 1 8.0830 0.5031 3.7140 16 7 9.8235 1.6064 3.2895 17 6 10.6845 0.7014 3.8507 18 1 10.3083 -0.0600 4.5179 19 6 12.0410 0.7633 3.5627 20 7 12.8684 -0.1069 4.1016 21 14 12.6918 2.0805 2.4092 22 1 12.6722 1.5709 1.0145 23 1 14.0847 2.4276 2.7899 24 1 11.8360 3.2903 2.5063 25 6 7.5797 2.2082 2.4611 26 6 5.6765 3.9754 2.3803 27 1 5.2768 4.7975 2.9739 28 6 6.4084 4.4444 1.1212 29 6 5.5352 5.4506 0.3688 30 6 7.7283 5.1097 1.5164 31 1 -0.5399 -0.9354 -0.0004 32 1 -0.5400 0.9353 0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 1.3585 2.1317 0.0895 35 1 2.6213 1.4027 -0.9314 36 1 3.7399 0.5066 1.0921 37 1 2.4772 1.2357 2.1130 38 1 5.2432 1.1019 3.2339 39 1 4.5807 2.4534 4.2536 40 1 6.3534 3.5938 5.2669 41 1 7.6393 4.3876 4.3039 42 1 8.0571 0.7372 6.1261 43 1 10.1615 2.2904 2.6906 44 1 13.8163 -0.0639 3.9001 45 1 8.2011 2.9138 1.9098 46 1 7.1694 1.4536 1.7902 47 1 6.6115 3.5876 0.4786 48 1 5.4086 6.3470 0.9758 49 1 6.0151 5.7148 -0.5735 50 1 4.5602 5.0068 0.1681 51 1 8.3108 5.3220 0.6200 52 1 7.5220 6.0405 2.0447 53 1 8.2922 4.4404 2.1661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105605030.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:44 Heat of formation + Delta-G solvation = -26.256534 kcal Electronic energy + Delta-G solvation = -31056.878037 eV Core-core repulsion = 27123.233261 eV Total energy + Delta-G solvation = -3933.644776 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.39976 -38.93997 -37.16352 -35.54830 -34.75366 -34.55566 -33.05027 -31.27819 -30.81790 -28.23305 -28.02483 -27.01110 -26.06961 -24.88173 -23.63679 -22.65521 -20.70810 -20.06665 -20.01406 -19.16023 -18.38331 -17.60471 -17.04034 -16.95809 -16.07802 -15.94139 -15.39956 -15.25307 -14.67677 -14.52537 -14.47962 -14.15346 -13.74438 -13.38693 -13.21746 -12.92223 -12.80337 -12.73836 -12.67954 -12.49024 -12.37063 -12.19437 -12.02445 -11.95346 -11.64275 -11.33723 -11.28360 -11.21074 -11.00144 -10.96314 -10.84267 -10.71908 -10.58325 -10.50321 -10.23002 -9.82027 -9.71902 -9.69763 -9.60909 -9.33386 -8.94356 -8.70057 -7.37002 -5.88261 -3.25072 1.97952 2.57930 2.73571 3.29680 3.32827 3.38992 4.18148 4.33102 4.48415 4.49373 4.63987 4.68510 4.82925 4.88007 4.89963 4.94052 5.00056 5.06144 5.09071 5.21634 5.33901 5.36733 5.43996 5.44980 5.54112 5.56163 5.62155 5.66827 5.70571 5.71979 5.75190 5.77077 5.82499 5.90274 5.93284 5.96429 6.02218 6.06021 6.16666 6.19766 6.32732 6.33340 6.35303 6.39231 6.49285 6.54081 6.62364 6.74218 7.67382 7.83859 8.12282 8.18548 8.32589 9.08222 9.81118 9.99906 11.29561 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012679 B = 0.003181 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.773742 B = 8799.640349 C = 9354.397199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 C -0.078 4.078 4 C -0.131 4.131 5 C 0.534 3.466 6 O -0.539 6.539 7 N -0.639 5.639 8 C 0.120 3.880 9 C -0.088 4.088 10 C -0.102 4.102 11 C 0.078 3.922 12 H 0.065 0.935 13 O -0.576 6.576 14 C 0.153 3.847 15 H 0.066 0.934 16 N -0.744 5.744 17 C -0.251 4.251 18 H 0.090 0.910 19 C 0.009 3.991 20 N -0.930 5.930 21 Si 0.882 3.118 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.276 1.276 25 C -0.113 4.113 26 C 0.154 3.846 27 H 0.090 0.910 28 C -0.090 4.090 29 C -0.171 4.171 30 C -0.158 4.158 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.380 0.620 43 H 0.362 0.638 44 H 0.261 0.739 45 H 0.087 0.913 46 H 0.066 0.934 47 H 0.074 0.926 48 H 0.043 0.957 49 H 0.045 0.955 50 H 0.099 0.901 51 H 0.057 0.943 52 H 0.054 0.946 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.414 5.820 -3.612 21.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.171 4.171 3 C -0.116 4.116 4 C -0.171 4.171 5 C 0.324 3.676 6 O -0.418 6.418 7 N -0.374 5.374 8 C -0.002 4.002 9 C -0.089 4.089 10 C -0.140 4.140 11 C 0.016 3.984 12 H 0.083 0.917 13 O -0.382 6.382 14 C 0.043 3.957 15 H 0.083 0.917 16 N -0.386 5.386 17 C -0.381 4.381 18 H 0.108 0.892 19 C -0.188 4.188 20 N -0.577 5.577 21 Si 0.713 3.287 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.202 1.202 25 C -0.151 4.151 26 C 0.052 3.948 27 H 0.108 0.892 28 C -0.109 4.109 29 C -0.228 4.228 30 C -0.215 4.215 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.128 0.872 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.228 0.772 43 H 0.195 0.805 44 H 0.071 0.929 45 H 0.105 0.895 46 H 0.085 0.915 47 H 0.093 0.907 48 H 0.062 0.938 49 H 0.064 0.936 50 H 0.117 0.883 51 H 0.076 0.924 52 H 0.074 0.926 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.054 6.417 -4.167 22.401 hybrid contribution 1.174 0.417 -0.620 1.391 sum -19.880 6.834 -4.787 21.560 Atomic orbital electron populations 1.23866 0.95971 1.01819 1.01526 1.23004 0.96100 0.98473 0.99551 1.20503 0.97716 0.95283 0.98073 1.21567 0.98851 0.95759 1.00909 1.20381 0.77888 0.88701 0.80582 1.90512 1.64996 1.47944 1.38301 1.50365 1.37130 1.25582 1.24308 1.23049 0.92154 0.98574 0.86465 1.22337 0.94336 0.95879 0.96368 1.22137 0.98736 0.97710 0.95421 1.23487 0.94435 0.90519 0.89942 0.91661 1.86302 1.47377 1.43383 1.61157 1.21623 0.84496 0.97870 0.91745 0.91652 1.42877 1.02180 1.37066 1.56525 1.19032 0.88200 1.07888 1.22984 0.89227 1.24677 0.95956 0.98359 0.99802 1.69695 1.03226 1.37464 1.47316 0.86589 0.78427 0.82252 0.81474 1.21008 1.21688 1.20184 1.22500 0.95305 0.99323 0.97933 1.22725 0.85874 0.90993 0.95244 0.89178 1.21148 0.95104 0.99123 0.95524 1.22287 1.03004 0.98366 0.99098 1.22074 0.96528 1.00870 1.02040 0.88524 0.88608 0.87249 0.90861 0.90192 0.88785 0.89093 0.89583 0.89371 0.90711 0.90129 0.77188 0.80520 0.92930 0.89534 0.91512 0.90736 0.93819 0.93578 0.88312 0.92427 0.92647 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.44 14.32 29.01 0.42 -1.03 16 2 C -0.15 -1.22 9.52 -36.02 -0.34 -1.56 16 3 C -0.08 -0.72 4.95 -27.88 -0.14 -0.86 16 4 C -0.13 -1.20 5.43 -27.89 -0.15 -1.35 16 5 C 0.53 6.49 7.92 -10.99 -0.09 6.40 16 6 O -0.54 -8.01 13.06 5.56 0.07 -7.94 16 7 N -0.64 -7.30 3.50 -178.22 -0.62 -7.93 16 8 C 0.12 1.24 7.90 -3.54 -0.03 1.22 16 9 C -0.09 -1.03 0.41 -154.65 -0.06 -1.09 16 10 C -0.10 -1.26 5.77 -25.66 -0.15 -1.41 16 11 C 0.08 1.20 4.06 -25.43 -0.10 1.10 16 12 H 0.07 1.17 7.92 -51.93 -0.41 0.76 16 13 O -0.58 -8.65 13.22 -35.23 -0.47 -9.12 16 14 C 0.15 2.59 3.36 -66.63 -0.22 2.36 16 15 H 0.07 1.17 7.91 -51.93 -0.41 0.76 16 16 N -0.74 -15.91 4.84 -52.16 -0.25 -16.16 16 17 C -0.25 -6.54 10.44 -15.06 -0.16 -6.70 16 18 H 0.09 2.48 8.06 -52.48 -0.42 2.05 16 19 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 20 N -0.93 -27.98 13.97 55.49 0.78 -27.21 16 21 Si 0.88 21.13 27.73 -169.99 -4.71 16.41 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 24 H -0.28 -6.13 6.52 56.52 0.37 -5.76 16 25 C -0.11 -1.58 4.65 -25.66 -0.12 -1.70 16 26 C 0.15 1.77 3.30 -67.42 -0.22 1.55 16 27 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 28 C -0.09 -1.10 2.00 -90.62 -0.18 -1.28 16 29 C -0.17 -2.14 9.10 37.16 0.34 -1.80 16 30 C -0.16 -1.83 8.54 37.16 0.32 -1.52 16 31 H 0.10 0.60 8.06 -52.48 -0.42 0.18 16 32 H 0.10 0.68 7.84 -52.49 -0.41 0.27 16 33 H 0.11 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.07 0.72 7.75 -51.93 -0.40 0.32 16 35 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.86 8.12 -51.93 -0.42 0.44 16 39 H 0.09 0.82 8.04 -51.92 -0.42 0.41 16 40 H 0.07 0.87 7.91 -51.93 -0.41 0.46 16 41 H 0.08 0.95 7.57 -51.93 -0.39 0.56 16 42 H 0.38 5.24 9.10 45.56 0.41 5.66 16 43 H 0.36 7.71 5.39 -40.82 -0.22 7.49 16 44 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.09 1.26 4.22 -51.93 -0.22 1.04 16 46 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 47 H 0.07 1.02 7.52 -51.93 -0.39 0.63 16 48 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.10 1.43 4.38 -51.93 -0.23 1.21 16 51 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 52 H 0.05 0.58 8.13 -51.93 -0.42 0.16 16 53 H 0.07 0.92 4.42 -51.93 -0.23 0.69 16 LS Contribution 407.92 15.07 6.15 6.15 Total: -1.00 -30.54 407.92 -8.44 -38.97 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: -8.38 Total: 14.33 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -0.99 Total: -7.51 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: -0.10 Total: -51.29 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.39 Total: -17.05 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.71 Total: 16.41 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.54 -8.44 -38.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105605030.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.716 kcal (2) G-P(sol) polarization free energy of solvation -30.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds