Wall clock time and date at job start Tue Mar 31 2020 21:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50711 * 119.99795 * 2 1 4 4 C 1.53001 * 109.47111 * 124.99833 * 3 2 1 5 5 C 1.50694 * 109.46995 * 179.97438 * 4 3 2 6 6 O 1.21282 * 120.00422 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00127 * 180.02562 * 5 4 3 8 8 C 1.47857 * 134.35527 * 354.41522 * 7 5 4 9 9 C 1.52536 * 85.65005 * 156.41262 * 8 7 5 10 10 C 1.53536 * 116.18728 * 141.07512 * 9 8 7 11 11 C 1.54512 * 104.03765 * 93.20703 * 10 9 8 12 12 H 1.09002 * 110.01246 * 141.49899 * 11 10 9 13 13 O 1.42900 * 110.04933 * 262.85938 * 11 10 9 14 14 C 1.53975 * 106.70258 * 22.19037 * 11 10 9 15 15 H 1.08995 * 110.00852 * 240.64853 * 14 11 10 16 16 N 1.46498 * 110.01176 * 119.30974 * 14 11 10 17 17 C 1.36942 * 119.99627 * 86.45606 * 16 14 11 18 18 H 1.08003 * 120.00173 * 359.97438 * 17 16 14 19 19 C 1.38811 * 119.99674 * 180.02562 * 17 16 14 20 20 N 1.31616 * 119.99605 * 180.02562 * 19 17 16 21 21 Si 1.86793 * 120.00201 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47310 * 270.00296 * 21 19 17 23 23 H 1.48508 * 109.47120 * 150.00109 * 21 19 17 24 24 H 1.48505 * 109.47131 * 30.00279 * 21 19 17 25 25 C 1.53528 * 116.18880 * 264.62797 * 9 8 7 26 26 C 1.47853 * 134.36127 * 174.44084 * 7 5 4 27 27 H 1.08999 * 113.84290 * 89.40608 * 26 7 5 28 28 C 1.52998 * 113.84553 * 317.76546 * 26 7 5 29 29 C 1.53003 * 109.46765 * 82.94130 * 28 26 7 30 30 C 1.53000 * 109.47224 * 202.94164 * 28 26 7 31 31 H 1.08003 * 119.99595 * 179.97438 * 1 2 3 32 32 H 1.07997 * 120.00243 * 359.97438 * 1 2 3 33 33 H 1.07997 * 120.00243 * 180.02562 * 2 1 3 34 34 H 1.08998 * 109.46871 * 4.99858 * 3 2 1 35 35 H 1.08998 * 109.47125 * 245.00068 * 3 2 1 36 36 H 1.09005 * 109.46638 * 59.99616 * 4 3 2 37 37 H 1.09004 * 109.46886 * 300.00163 * 4 3 2 38 38 H 1.08998 * 113.84803 * 42.22805 * 8 7 5 39 39 H 1.09007 * 113.95926 * 270.60497 * 8 7 5 40 40 H 1.08998 * 110.51220 * 334.56530 * 10 9 8 41 41 H 1.09004 * 110.51387 * 211.84624 * 10 9 8 42 42 H 0.96703 * 113.99583 * 178.74374 * 13 11 10 43 43 H 0.96994 * 120.00602 * 266.45361 * 16 14 11 44 44 H 0.97002 * 119.99787 * 179.97438 * 20 19 17 45 45 H 1.08996 * 110.51535 * 148.15707 * 25 9 8 46 46 H 1.08998 * 110.51275 * 25.42854 * 25 9 8 47 47 H 1.09001 * 109.47238 * 322.94240 * 28 26 7 48 48 H 1.08995 * 109.47330 * 65.19744 * 29 28 26 49 49 H 1.09000 * 109.46689 * 185.19244 * 29 28 26 50 50 H 1.08996 * 109.46875 * 305.18724 * 29 28 26 51 51 H 1.09003 * 109.47115 * 172.39720 * 30 28 26 52 52 H 1.09002 * 109.47132 * 292.39633 * 30 28 26 53 53 H 1.08998 * 109.47113 * 52.39944 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3333 1.1817 5 6 3.7889 2.6381 1.1813 6 8 3.5703 3.4645 0.3209 7 7 4.7061 2.8868 2.1370 8 6 5.1421 2.1798 3.3602 9 6 6.4512 2.9453 3.1962 10 6 7.1039 3.4562 4.4886 11 6 8.0902 2.3330 4.8797 12 1 9.0091 2.7648 5.2762 13 8 7.4936 1.4744 5.8539 14 6 8.3919 1.5415 3.5939 15 1 8.0830 0.5031 3.7140 16 7 9.8235 1.6064 3.2895 17 6 10.6845 0.7014 3.8507 18 1 10.3083 -0.0600 4.5179 19 6 12.0410 0.7633 3.5627 20 7 12.8684 -0.1069 4.1016 21 14 12.6918 2.0805 2.4092 22 1 12.6722 1.5709 1.0145 23 1 14.0847 2.4276 2.7899 24 1 11.8360 3.2903 2.5063 25 6 7.5797 2.2082 2.4611 26 6 5.6765 3.9754 2.3803 27 1 5.2768 4.7975 2.9739 28 6 6.4084 4.4444 1.1212 29 6 5.5352 5.4506 0.3688 30 6 7.7283 5.1097 1.5164 31 1 -0.5399 -0.9354 -0.0004 32 1 -0.5400 0.9353 0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 1.3585 2.1317 0.0895 35 1 2.6213 1.4027 -0.9314 36 1 3.7399 0.5066 1.0921 37 1 2.4772 1.2357 2.1130 38 1 5.2432 1.1019 3.2339 39 1 4.5807 2.4534 4.2536 40 1 6.3534 3.5938 5.2669 41 1 7.6393 4.3876 4.3039 42 1 8.0571 0.7372 6.1261 43 1 10.1615 2.2904 2.6906 44 1 13.8163 -0.0639 3.9001 45 1 8.2011 2.9138 1.9098 46 1 7.1694 1.4536 1.7902 47 1 6.6115 3.5876 0.4786 48 1 5.4086 6.3470 0.9758 49 1 6.0151 5.7148 -0.5735 50 1 4.5602 5.0068 0.1681 51 1 8.3108 5.3220 0.6200 52 1 7.5220 6.0405 2.0447 53 1 8.2922 4.4404 2.1661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105605030.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:42 Heat of formation + Delta-G solvation = -46.043008 kcal Electronic energy + Delta-G solvation = -31057.736042 eV Core-core repulsion = 27123.233261 eV Total energy + Delta-G solvation = -3934.502782 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -42.38230 -39.96301 -38.35281 -36.26244 -36.19457 -35.61189 -34.52578 -32.88602 -31.72867 -29.42088 -29.17740 -27.98784 -26.95166 -26.08714 -24.81177 -24.10616 -21.75390 -21.25295 -20.66420 -20.22539 -19.79951 -19.05001 -18.20298 -17.95017 -16.92371 -16.86755 -16.76201 -16.38584 -16.02161 -15.61443 -15.46848 -15.24496 -14.97469 -14.69675 -14.32935 -14.20089 -14.06010 -13.68760 -13.63504 -13.54692 -13.43917 -13.29646 -13.05746 -12.97671 -12.91573 -12.61524 -12.40258 -12.21160 -12.14903 -12.03616 -11.96573 -11.92431 -11.83092 -11.75371 -11.62523 -11.53178 -11.07923 -10.85642 -10.69799 -10.44130 -10.17497 -9.62124 -9.25690 -8.01313 -5.34255 1.37725 1.38773 1.40965 1.48134 1.67802 1.87253 2.49080 3.23198 3.28264 3.31270 3.46046 3.64043 3.79624 3.84419 3.98787 3.99731 4.03419 4.05632 4.17584 4.22657 4.36396 4.43919 4.45379 4.50090 4.55515 4.56317 4.63168 4.71127 4.71506 4.79084 4.79901 4.91267 4.94432 4.96633 5.01148 5.03059 5.05254 5.08424 5.18461 5.22278 5.22620 5.28163 5.32414 5.39692 5.52157 5.61838 5.76275 5.78599 5.90051 6.21793 6.78014 6.90703 7.09354 7.26833 7.85966 8.03009 9.19704 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012679 B = 0.003181 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.773742 B = 8799.640349 C = 9354.397199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.162 4.162 3 C -0.074 4.074 4 C -0.124 4.124 5 C 0.527 3.473 6 O -0.571 6.571 7 N -0.639 5.639 8 C 0.124 3.876 9 C -0.080 4.080 10 C -0.092 4.092 11 C 0.084 3.916 12 H 0.040 0.960 13 O -0.574 6.574 14 C 0.149 3.851 15 H 0.054 0.946 16 N -0.746 5.746 17 C -0.226 4.226 18 H 0.063 0.937 19 C -0.062 4.062 20 N -0.982 5.982 21 Si 0.945 3.055 22 H -0.283 1.283 23 H -0.300 1.300 24 H -0.247 1.247 25 C -0.104 4.104 26 C 0.155 3.845 27 H 0.104 0.896 28 C -0.086 4.086 29 C -0.166 4.166 30 C -0.154 4.154 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.384 0.616 43 H 0.364 0.636 44 H 0.256 0.744 45 H 0.085 0.915 46 H 0.065 0.935 47 H 0.055 0.945 48 H 0.054 0.946 49 H 0.043 0.957 50 H 0.080 0.920 51 H 0.056 0.944 52 H 0.069 0.931 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.424 7.139 -3.593 23.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.180 4.180 3 C -0.111 4.111 4 C -0.164 4.164 5 C 0.318 3.682 6 O -0.452 6.452 7 N -0.374 5.374 8 C 0.002 3.998 9 C -0.081 4.081 10 C -0.130 4.130 11 C 0.022 3.978 12 H 0.058 0.942 13 O -0.381 6.381 14 C 0.040 3.960 15 H 0.072 0.928 16 N -0.390 5.390 17 C -0.357 4.357 18 H 0.081 0.919 19 C -0.253 4.253 20 N -0.633 5.633 21 Si 0.773 3.227 22 H -0.210 1.210 23 H -0.228 1.228 24 H -0.171 1.171 25 C -0.142 4.142 26 C 0.052 3.948 27 H 0.122 0.878 28 C -0.105 4.105 29 C -0.223 4.223 30 C -0.212 4.212 31 H 0.128 0.872 32 H 0.114 0.886 33 H 0.137 0.863 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.110 0.890 39 H 0.126 0.874 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.232 0.768 43 H 0.198 0.802 44 H 0.065 0.935 45 H 0.103 0.897 46 H 0.084 0.916 47 H 0.074 0.926 48 H 0.073 0.927 49 H 0.063 0.937 50 H 0.099 0.901 51 H 0.075 0.925 52 H 0.088 0.912 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.129 7.755 -4.139 24.743 hybrid contribution 1.696 -0.053 -0.590 1.796 sum -21.433 7.702 -4.728 23.261 Atomic orbital electron populations 1.24033 0.95902 1.02529 1.00402 1.23002 0.96322 0.98120 1.00532 1.20417 0.97474 0.95746 0.97497 1.21574 0.98828 0.94361 1.01605 1.20904 0.77858 0.89305 0.80095 1.90509 1.66053 1.49130 1.39464 1.50409 1.36804 1.25639 1.24512 1.23172 0.91129 0.98811 0.86669 1.22182 0.94122 0.96123 0.95670 1.22104 0.98311 0.96671 0.95896 1.23266 0.94711 0.91037 0.88770 0.94227 1.86304 1.47349 1.43502 1.60926 1.21825 0.82341 0.97964 0.93870 0.92839 1.42887 1.03569 1.36186 1.56331 1.19030 0.88672 1.07060 1.20903 0.91854 1.25423 0.96504 1.01039 1.02353 1.69866 1.03275 1.40133 1.50001 0.85561 0.77495 0.80660 0.79010 1.20995 1.22752 1.17139 1.22370 0.95663 0.99265 0.96882 1.22752 0.85802 0.91326 0.94872 0.87813 1.21080 0.95519 0.98393 0.95534 1.22204 1.02013 0.98701 0.99340 1.22034 0.95899 1.01226 1.01995 0.87161 0.88612 0.86270 0.91903 0.91732 0.87741 0.87374 0.88985 0.87387 0.89109 0.89128 0.76806 0.80207 0.93515 0.89692 0.91600 0.92627 0.92707 0.93748 0.90118 0.92504 0.91202 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.51 14.32 67.78 0.97 -1.54 16 2 C -0.16 -2.32 9.52 25.65 0.24 -2.08 16 3 C -0.07 -1.29 4.95 29.85 0.15 -1.14 16 4 C -0.12 -2.04 5.43 29.85 0.16 -1.88 16 5 C 0.53 12.00 7.92 87.65 0.69 12.70 16 6 O -0.57 -16.64 13.06 -3.04 -0.04 -16.68 16 7 N -0.64 -13.09 3.50 -836.16 -2.92 -16.01 16 8 C 0.12 2.17 7.90 85.96 0.68 2.85 16 9 C -0.08 -1.64 0.41 -52.05 -0.02 -1.66 16 10 C -0.09 -1.98 5.77 31.29 0.18 -1.80 16 11 C 0.08 2.45 4.06 31.44 0.13 2.58 16 12 H 0.04 1.38 7.92 -2.39 -0.02 1.36 16 13 O -0.57 -16.28 13.22 -148.98 -1.97 -18.25 16 14 C 0.15 4.85 3.36 45.84 0.15 5.01 16 15 H 0.05 1.89 7.91 -2.39 -0.02 1.87 16 16 N -0.75 -31.35 4.84 -318.94 -1.54 -32.90 16 17 C -0.23 -11.87 10.44 84.03 0.88 -10.99 16 18 H 0.06 3.61 8.06 -2.91 -0.02 3.58 16 19 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 20 N -0.98 -60.82 13.97 21.65 0.30 -60.52 16 21 Si 0.94 43.66 27.73 68.60 1.90 45.56 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 23 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 24 H -0.25 -10.09 6.52 99.48 0.65 -9.44 16 25 C -0.10 -2.72 4.65 31.29 0.15 -2.58 16 26 C 0.15 3.15 3.30 44.58 0.15 3.30 16 27 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 28 C -0.09 -1.94 2.00 -10.79 -0.02 -1.96 16 29 C -0.17 -3.90 9.10 71.98 0.66 -3.24 16 30 C -0.15 -3.20 8.54 71.98 0.61 -2.59 16 31 H 0.11 1.13 8.06 -2.91 -0.02 1.11 16 32 H 0.10 1.23 7.84 -2.91 -0.02 1.21 16 33 H 0.12 1.47 8.06 -2.91 -0.02 1.44 16 34 H 0.06 1.21 7.75 -2.39 -0.02 1.19 16 35 H 0.06 1.31 8.10 -2.39 -0.02 1.29 16 36 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.09 1.55 8.12 -2.39 -0.02 1.53 16 39 H 0.11 1.55 8.04 -2.38 -0.02 1.53 16 40 H 0.09 1.75 7.91 -2.39 -0.02 1.73 16 41 H 0.09 1.83 7.57 -2.39 -0.02 1.81 16 42 H 0.38 10.33 9.10 -74.06 -0.67 9.65 16 43 H 0.36 14.93 5.39 -92.71 -0.50 14.43 16 44 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 45 H 0.08 2.30 4.22 -2.39 -0.01 2.29 16 46 H 0.07 1.75 8.07 -2.39 -0.02 1.73 16 47 H 0.06 1.46 7.52 -2.39 -0.02 1.44 16 48 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.08 2.28 4.38 -2.39 -0.01 2.27 16 51 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 52 H 0.07 1.25 8.13 -2.39 -0.02 1.23 16 53 H 0.06 1.46 4.42 -2.39 -0.01 1.45 16 Total: -1.00 -67.06 407.92 1.62 -65.44 By element: Atomic # 1 Polarization: 41.72 SS G_CDS: -0.33 Total: 41.39 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 6.22 Total: -8.03 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -4.17 Total: -109.43 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -2.01 Total: -34.93 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.90 Total: 45.56 kcal Total: -67.06 1.62 -65.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105605030.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.392 kcal (2) G-P(sol) polarization free energy of solvation -67.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds