Wall clock time and date at job start Tue Mar 31 2020 21:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50696 * 119.99897 * 2 1 4 4 C 1.53008 * 109.46687 * 124.99954 * 3 2 1 5 5 C 1.50703 * 109.46953 * 179.97438 * 4 3 2 6 6 O 1.21282 * 119.99560 * 359.72446 * 5 4 3 7 7 N 1.34776 * 120.00057 * 180.02562 * 5 4 3 8 8 C 1.47313 * 135.90174 * 359.35553 * 7 5 4 9 9 C 1.52435 * 87.52723 * 154.07041 * 8 7 5 10 10 C 1.52990 * 116.90275 * 268.16972 * 9 8 7 11 11 C 1.54190 * 106.20322 * 206.74472 * 10 9 8 12 12 H 1.08994 * 110.03568 * 118.35386 * 11 10 9 13 13 O 1.42894 * 110.03304 * 239.74120 * 11 10 9 14 14 C 1.54375 * 106.58905 * 359.01934 * 11 10 9 15 15 H 1.08992 * 110.44809 * 264.53301 * 14 11 10 16 16 N 1.46500 * 110.44877 * 142.11172 * 14 11 10 17 17 C 1.36931 * 120.00114 * 86.45201 * 16 14 11 18 18 H 1.08007 * 119.99898 * 0.02562 * 17 16 14 19 19 C 1.38815 * 120.00141 * 179.97438 * 17 16 14 20 20 N 1.31624 * 119.99806 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99950 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47062 * 60.00767 * 21 19 17 23 23 H 1.48502 * 109.47135 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47104 * 300.00462 * 21 19 17 25 25 C 1.53612 * 116.14798 * 142.07715 * 9 8 7 26 26 C 1.47320 * 135.90094 * 179.72684 * 7 5 4 27 27 H 1.08991 * 113.52502 * 320.66968 * 26 7 5 28 28 C 1.52995 * 113.52252 * 91.29055 * 26 7 5 29 29 C 1.52997 * 109.46963 * 186.08125 * 28 26 7 30 30 C 1.52997 * 109.47264 * 306.08469 * 28 26 7 31 31 H 1.07997 * 120.00685 * 179.97438 * 1 2 3 32 32 H 1.08007 * 119.99935 * 0.02562 * 1 2 3 33 33 H 1.08000 * 119.99292 * 179.97438 * 2 1 3 34 34 H 1.08990 * 109.47398 * 5.00026 * 3 2 1 35 35 H 1.09002 * 109.46879 * 244.99545 * 3 2 1 36 36 H 1.08998 * 109.46974 * 60.00214 * 4 3 2 37 37 H 1.08994 * 109.47261 * 299.99696 * 4 3 2 38 38 H 1.09000 * 113.53044 * 268.71175 * 8 7 5 39 39 H 1.09005 * 113.52134 * 39.33048 * 8 7 5 40 40 H 1.08999 * 110.10656 * 325.92093 * 10 9 8 41 41 H 1.08994 * 110.11046 * 87.49310 * 10 9 8 42 42 H 0.96697 * 114.00110 * 179.97438 * 13 11 10 43 43 H 0.97004 * 119.99474 * 266.45458 * 16 14 11 44 44 H 0.96992 * 119.99669 * 179.97438 * 20 19 17 45 45 H 1.08998 * 110.78125 * 286.15708 * 25 9 8 46 46 H 1.09001 * 110.78426 * 49.60510 * 25 9 8 47 47 H 1.09003 * 109.47403 * 66.08853 * 28 26 7 48 48 H 1.09001 * 109.46963 * 63.85659 * 29 28 26 49 49 H 1.09004 * 109.47107 * 183.85367 * 29 28 26 50 50 H 1.08996 * 109.47592 * 303.85534 * 29 28 26 51 51 H 1.08998 * 109.47434 * 65.42241 * 30 28 26 52 52 H 1.09009 * 109.47280 * 185.41961 * 30 28 26 53 53 H 1.09004 * 109.47117 * 305.41596 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 6 3.7890 2.6378 1.1814 6 8 3.5743 3.4620 0.3179 7 7 4.7061 2.8864 2.1372 8 6 5.2284 2.1705 3.3140 9 6 6.5140 2.9728 3.1490 10 6 7.6170 2.3449 2.2947 11 6 8.9468 2.9303 2.8107 12 1 9.5822 2.1322 3.1946 13 8 9.6171 3.6254 1.7574 14 6 8.5851 3.9121 3.9458 15 1 8.5199 4.9303 3.5623 16 7 9.5741 3.8348 5.0239 17 6 10.7133 4.5922 4.9636 18 1 10.8826 5.2469 4.1214 19 6 11.6501 4.5193 5.9854 20 7 11.4435 3.7218 7.0120 21 14 13.2038 5.5530 5.9034 22 1 12.8391 6.9917 5.8532 23 1 14.0346 5.2943 7.1069 24 1 13.9732 5.1945 4.6850 25 6 7.1986 3.4287 4.4464 26 6 5.6190 3.9954 2.4646 27 1 6.0755 4.4561 1.5888 28 6 5.0149 5.0196 3.4273 29 6 5.9753 6.2002 3.5844 30 6 3.6803 5.5184 2.8697 31 1 -0.5401 -0.9352 -0.0004 32 1 -0.5400 0.9354 -0.0004 33 1 1.8499 -0.9354 0.0004 34 1 1.3586 2.1316 0.0896 35 1 2.6213 1.4025 -0.9314 36 1 3.7399 0.5065 1.0921 37 1 2.4772 1.2355 2.1130 38 1 4.6901 2.3958 4.2347 39 1 5.3573 1.1006 3.1505 40 1 7.6130 1.2615 2.4147 41 1 7.4733 2.6059 1.2463 42 1 10.4613 4.0173 2.0197 43 1 9.4218 3.2471 5.7804 44 1 12.0983 3.6707 7.7257 45 1 6.6469 4.2479 4.9075 46 1 7.3070 2.5950 5.1402 47 1 4.8511 4.5528 4.3987 48 1 6.0856 6.7087 2.6266 49 1 5.5769 6.8970 4.3219 50 1 6.9474 5.8361 3.9165 51 1 2.9653 4.6960 2.8481 52 1 3.2966 6.3168 3.5051 53 1 3.8281 5.8981 1.8587 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105605032.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:49 Heat of formation + Delta-G solvation = -34.704628 kcal Electronic energy + Delta-G solvation = -30801.692387 eV Core-core repulsion = 26867.681275 eV Total energy + Delta-G solvation = -3934.011113 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.51835 -38.88786 -37.16427 -35.55819 -34.52610 -34.35023 -33.14921 -31.20560 -30.50430 -28.48571 -27.64798 -26.80724 -26.00830 -24.76508 -23.67530 -22.90872 -21.13712 -20.08131 -19.56286 -19.31174 -17.94338 -17.31807 -17.12785 -16.75754 -16.19240 -15.89110 -15.43912 -15.15316 -14.89920 -14.43288 -14.16155 -13.90478 -13.60196 -13.48589 -13.44586 -13.11277 -12.89121 -12.71464 -12.59484 -12.44389 -12.14015 -11.96425 -11.82315 -11.69008 -11.44873 -11.33096 -11.29482 -11.16640 -11.02446 -10.97706 -10.81822 -10.73279 -10.56404 -10.40077 -10.15355 -10.01187 -9.80898 -9.71778 -9.57351 -9.48256 -8.84219 -8.64131 -7.04420 -5.87384 -3.17112 1.94533 2.59064 2.79721 3.37782 3.43185 3.43608 4.15581 4.28879 4.44656 4.52439 4.64208 4.80641 4.85656 4.87153 4.94058 4.95351 5.01645 5.03840 5.14931 5.27191 5.32360 5.38524 5.42361 5.51849 5.53317 5.60004 5.67349 5.69360 5.73144 5.77040 5.82943 5.86206 5.88980 5.93790 5.97051 6.02439 6.06819 6.12121 6.17611 6.24174 6.31441 6.32394 6.38942 6.41415 6.46050 6.49638 6.64724 6.90954 7.57531 7.74666 8.13811 8.28122 8.32105 9.42527 9.99031 10.33367 11.34613 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020995 B = 0.002615 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.357827 B =10706.608527 C =11146.850285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.153 4.153 3 C -0.079 4.079 4 C -0.130 4.130 5 C 0.539 3.461 6 O -0.542 6.542 7 N -0.638 5.638 8 C 0.109 3.891 9 C -0.088 4.088 10 C -0.088 4.088 11 C 0.078 3.922 12 H 0.060 0.940 13 O -0.577 6.577 14 C 0.149 3.851 15 H 0.065 0.935 16 N -0.720 5.720 17 C -0.248 4.248 18 H 0.070 0.930 19 C -0.009 4.009 20 N -0.930 5.930 21 Si 0.906 3.094 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 C -0.119 4.119 26 C 0.154 3.846 27 H 0.088 0.912 28 C -0.094 4.094 29 C -0.155 4.155 30 C -0.138 4.138 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.381 0.619 43 H 0.385 0.615 44 H 0.257 0.743 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.055 0.945 49 H 0.057 0.943 50 H 0.077 0.923 51 H 0.046 0.954 52 H 0.053 0.947 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.375 -5.840 -8.142 20.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.171 4.171 3 C -0.117 4.117 4 C -0.170 4.170 5 C 0.329 3.671 6 O -0.420 6.420 7 N -0.372 5.372 8 C -0.014 4.014 9 C -0.090 4.090 10 C -0.126 4.126 11 C 0.016 3.984 12 H 0.078 0.922 13 O -0.383 6.383 14 C 0.038 3.962 15 H 0.083 0.917 16 N -0.361 5.361 17 C -0.379 4.379 18 H 0.088 0.912 19 C -0.205 4.205 20 N -0.577 5.577 21 Si 0.737 3.263 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.158 4.158 26 C 0.051 3.949 27 H 0.106 0.894 28 C -0.114 4.114 29 C -0.212 4.212 30 C -0.195 4.195 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.127 0.873 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.229 0.771 43 H 0.219 0.781 44 H 0.067 0.933 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.074 0.926 49 H 0.076 0.924 50 H 0.095 0.905 51 H 0.066 0.934 52 H 0.072 0.928 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.035 -5.527 -9.137 21.825 hybrid contribution 1.303 0.333 0.697 1.515 sum -17.732 -5.194 -8.440 20.313 Atomic orbital electron populations 1.23876 0.95977 1.01860 1.01406 1.22985 0.96089 0.98392 0.99672 1.20509 0.97758 0.95324 0.98085 1.21559 0.98753 0.95728 1.00918 1.20220 0.77758 0.88783 0.80328 1.90702 1.65070 1.48960 1.37256 1.49894 1.39221 1.21532 1.26589 1.23053 0.92040 0.97924 0.88410 1.22006 0.93135 0.96213 0.97615 1.21643 0.92470 0.99020 0.99424 1.23525 0.91912 0.94992 0.87996 0.92240 1.86302 1.39206 1.74170 1.38640 1.21868 0.87896 0.97076 0.89388 0.91721 1.42442 1.19990 1.51431 1.22195 1.19165 0.96199 1.18000 1.04509 0.91175 1.24754 0.99025 0.99841 0.96927 1.69643 1.36528 1.40904 1.10630 0.86293 0.83154 0.79983 0.76891 1.21187 1.21714 1.21165 1.22591 0.96840 1.01513 0.94837 1.22409 0.86432 0.89027 0.97079 0.89409 1.21296 0.95819 0.95778 0.98462 1.21995 1.00265 0.97058 1.01929 1.21713 0.96166 1.00455 1.01178 0.88518 0.88559 0.87310 0.90804 0.90165 0.88937 0.89099 0.89435 0.90316 0.91013 0.90882 0.77070 0.78118 0.93345 0.90186 0.90496 0.90463 0.92631 0.92411 0.90472 0.93437 0.92828 0.92420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.37 14.32 29.02 0.42 -0.96 16 2 C -0.15 -1.16 9.52 -36.03 -0.34 -1.50 16 3 C -0.08 -0.72 4.95 -27.88 -0.14 -0.86 16 4 C -0.13 -1.16 5.50 -27.88 -0.15 -1.31 16 5 C 0.54 6.80 7.48 -10.98 -0.08 6.72 16 6 O -0.54 -8.82 16.75 5.56 0.09 -8.73 16 7 N -0.64 -7.52 2.96 -177.52 -0.53 -8.05 16 8 C 0.11 1.07 7.41 -7.57 -0.06 1.01 16 9 C -0.09 -1.08 0.95 -154.92 -0.15 -1.23 16 10 C -0.09 -1.22 6.10 -26.11 -0.16 -1.38 16 11 C 0.08 1.32 4.01 -25.39 -0.10 1.22 16 12 H 0.06 1.12 8.04 -51.93 -0.42 0.70 16 13 O -0.58 -10.28 13.22 -35.23 -0.47 -10.74 16 14 C 0.15 2.64 2.99 -66.08 -0.20 2.45 16 15 H 0.07 1.23 6.38 -51.93 -0.33 0.90 16 16 N -0.72 -16.28 5.16 -51.64 -0.27 -16.54 16 17 C -0.25 -6.31 9.97 -15.06 -0.15 -6.46 16 18 H 0.07 1.72 7.83 -52.48 -0.41 1.31 16 19 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 20 N -0.93 -26.55 13.06 55.49 0.72 -25.83 16 21 Si 0.91 21.34 29.55 -169.99 -5.02 16.31 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 C -0.12 -1.67 5.06 -25.28 -0.13 -1.80 16 26 C 0.15 1.96 3.25 -71.59 -0.23 1.73 16 27 H 0.09 1.33 8.05 -51.93 -0.42 0.91 16 28 C -0.09 -1.11 2.05 -90.63 -0.19 -1.29 16 29 C -0.15 -1.91 8.71 37.16 0.32 -1.59 16 30 C -0.14 -1.63 8.82 37.16 0.33 -1.30 16 31 H 0.10 0.56 8.06 -52.49 -0.42 0.14 16 32 H 0.10 0.67 7.84 -52.48 -0.41 0.26 16 33 H 0.11 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.07 0.74 7.75 -51.93 -0.40 0.34 16 35 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.76 7.55 -51.93 -0.39 0.36 16 39 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 40 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 41 H 0.07 1.11 7.74 -51.93 -0.40 0.71 16 42 H 0.38 6.41 9.11 45.56 0.42 6.83 16 43 H 0.38 9.32 7.71 -40.82 -0.31 9.01 16 44 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 45 H 0.08 1.08 4.71 -51.93 -0.24 0.84 16 46 H 0.08 1.08 8.00 -51.93 -0.42 0.66 16 47 H 0.08 0.85 6.14 -51.93 -0.32 0.54 16 48 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 49 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 50 H 0.08 1.08 4.35 -51.93 -0.23 0.85 16 51 H 0.05 0.58 7.42 -51.93 -0.39 0.19 16 52 H 0.05 0.57 8.14 -51.92 -0.42 0.14 16 53 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 414.81 15.07 6.25 6.25 Total: -1.00 -30.21 414.81 -8.77 -38.98 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: -8.45 Total: 15.25 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -1.10 Total: -6.89 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.07 Total: -50.42 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.37 Total: -19.47 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -30.21 -8.77 -38.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105605032.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.274 kcal (2) G-P(sol) polarization free energy of solvation -30.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds