Wall clock time and date at job start Tue Mar 31 2020 21:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50696 * 119.99897 * 2 1 4 4 C 1.53008 * 109.46687 * 124.99954 * 3 2 1 5 5 C 1.50703 * 109.46953 * 179.97438 * 4 3 2 6 6 O 1.21282 * 119.99560 * 359.72446 * 5 4 3 7 7 N 1.34776 * 120.00057 * 180.02562 * 5 4 3 8 8 C 1.47313 * 135.90174 * 359.35553 * 7 5 4 9 9 C 1.52435 * 87.52723 * 154.07041 * 8 7 5 10 10 C 1.52990 * 116.90275 * 268.16972 * 9 8 7 11 11 C 1.54190 * 106.20322 * 206.74472 * 10 9 8 12 12 H 1.08994 * 110.03568 * 118.35386 * 11 10 9 13 13 O 1.42894 * 110.03304 * 239.74120 * 11 10 9 14 14 C 1.54375 * 106.58905 * 359.01934 * 11 10 9 15 15 H 1.08992 * 110.44809 * 264.53301 * 14 11 10 16 16 N 1.46500 * 110.44877 * 142.11172 * 14 11 10 17 17 C 1.36931 * 120.00114 * 86.45201 * 16 14 11 18 18 H 1.08007 * 119.99898 * 0.02562 * 17 16 14 19 19 C 1.38815 * 120.00141 * 179.97438 * 17 16 14 20 20 N 1.31624 * 119.99806 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99950 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47062 * 60.00767 * 21 19 17 23 23 H 1.48502 * 109.47135 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47104 * 300.00462 * 21 19 17 25 25 C 1.53612 * 116.14798 * 142.07715 * 9 8 7 26 26 C 1.47320 * 135.90094 * 179.72684 * 7 5 4 27 27 H 1.08991 * 113.52502 * 320.66968 * 26 7 5 28 28 C 1.52995 * 113.52252 * 91.29055 * 26 7 5 29 29 C 1.52997 * 109.46963 * 186.08125 * 28 26 7 30 30 C 1.52997 * 109.47264 * 306.08469 * 28 26 7 31 31 H 1.07997 * 120.00685 * 179.97438 * 1 2 3 32 32 H 1.08007 * 119.99935 * 0.02562 * 1 2 3 33 33 H 1.08000 * 119.99292 * 179.97438 * 2 1 3 34 34 H 1.08990 * 109.47398 * 5.00026 * 3 2 1 35 35 H 1.09002 * 109.46879 * 244.99545 * 3 2 1 36 36 H 1.08998 * 109.46974 * 60.00214 * 4 3 2 37 37 H 1.08994 * 109.47261 * 299.99696 * 4 3 2 38 38 H 1.09000 * 113.53044 * 268.71175 * 8 7 5 39 39 H 1.09005 * 113.52134 * 39.33048 * 8 7 5 40 40 H 1.08999 * 110.10656 * 325.92093 * 10 9 8 41 41 H 1.08994 * 110.11046 * 87.49310 * 10 9 8 42 42 H 0.96697 * 114.00110 * 179.97438 * 13 11 10 43 43 H 0.97004 * 119.99474 * 266.45458 * 16 14 11 44 44 H 0.96992 * 119.99669 * 179.97438 * 20 19 17 45 45 H 1.08998 * 110.78125 * 286.15708 * 25 9 8 46 46 H 1.09001 * 110.78426 * 49.60510 * 25 9 8 47 47 H 1.09003 * 109.47403 * 66.08853 * 28 26 7 48 48 H 1.09001 * 109.46963 * 63.85659 * 29 28 26 49 49 H 1.09004 * 109.47107 * 183.85367 * 29 28 26 50 50 H 1.08996 * 109.47592 * 303.85534 * 29 28 26 51 51 H 1.08998 * 109.47434 * 65.42241 * 30 28 26 52 52 H 1.09009 * 109.47280 * 185.41961 * 30 28 26 53 53 H 1.09004 * 109.47117 * 305.41596 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 6 3.7890 2.6378 1.1814 6 8 3.5743 3.4620 0.3179 7 7 4.7061 2.8864 2.1372 8 6 5.2284 2.1705 3.3140 9 6 6.5140 2.9728 3.1490 10 6 7.6170 2.3449 2.2947 11 6 8.9468 2.9303 2.8107 12 1 9.5822 2.1322 3.1946 13 8 9.6171 3.6254 1.7574 14 6 8.5851 3.9121 3.9458 15 1 8.5199 4.9303 3.5623 16 7 9.5741 3.8348 5.0239 17 6 10.7133 4.5922 4.9636 18 1 10.8826 5.2469 4.1214 19 6 11.6501 4.5193 5.9854 20 7 11.4435 3.7218 7.0120 21 14 13.2038 5.5530 5.9034 22 1 12.8391 6.9917 5.8532 23 1 14.0346 5.2943 7.1069 24 1 13.9732 5.1945 4.6850 25 6 7.1986 3.4287 4.4464 26 6 5.6190 3.9954 2.4646 27 1 6.0755 4.4561 1.5888 28 6 5.0149 5.0196 3.4273 29 6 5.9753 6.2002 3.5844 30 6 3.6803 5.5184 2.8697 31 1 -0.5401 -0.9352 -0.0004 32 1 -0.5400 0.9354 -0.0004 33 1 1.8499 -0.9354 0.0004 34 1 1.3586 2.1316 0.0896 35 1 2.6213 1.4025 -0.9314 36 1 3.7399 0.5065 1.0921 37 1 2.4772 1.2355 2.1130 38 1 4.6901 2.3958 4.2347 39 1 5.3573 1.1006 3.1505 40 1 7.6130 1.2615 2.4147 41 1 7.4733 2.6059 1.2463 42 1 10.4613 4.0173 2.0197 43 1 9.4218 3.2471 5.7804 44 1 12.0983 3.6707 7.7257 45 1 6.6469 4.2479 4.9075 46 1 7.3070 2.5950 5.1402 47 1 4.8511 4.5528 4.3987 48 1 6.0856 6.7087 2.6266 49 1 5.5769 6.8970 4.3219 50 1 6.9474 5.8361 3.9165 51 1 2.9653 4.6960 2.8481 52 1 3.2966 6.3168 3.5051 53 1 3.8281 5.8981 1.8587 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105605032.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:47 Heat of formation + Delta-G solvation = -53.876033 kcal Electronic energy + Delta-G solvation = -30802.523722 eV Core-core repulsion = 26867.681275 eV Total energy + Delta-G solvation = -3934.842447 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -42.54624 -39.95211 -38.48255 -36.24370 -36.04508 -35.46451 -34.66760 -32.50560 -31.65944 -29.59460 -28.95400 -27.87522 -26.95092 -26.07384 -24.89610 -24.25491 -22.25270 -20.84937 -20.64877 -20.39188 -19.28090 -18.81629 -18.35480 -17.94664 -17.06791 -16.97539 -16.62365 -16.28366 -16.07994 -15.65488 -15.26795 -15.18200 -14.85964 -14.73644 -14.60225 -14.25434 -14.10755 -13.72561 -13.52373 -13.43203 -13.19589 -13.13517 -12.93857 -12.86639 -12.83528 -12.54889 -12.45399 -12.32920 -12.23242 -12.05799 -12.01350 -11.99610 -11.87532 -11.66821 -11.65568 -11.46643 -11.18846 -11.02128 -10.72084 -10.57901 -10.20724 -9.61605 -8.93088 -7.92104 -5.19415 1.38328 1.50651 1.51117 1.56858 1.65686 1.89096 2.57532 3.15105 3.30358 3.39493 3.50753 3.68254 3.79627 3.86930 3.94952 3.98713 4.03259 4.17548 4.20535 4.28425 4.38925 4.43595 4.46310 4.50312 4.56470 4.57881 4.62261 4.66068 4.70437 4.78461 4.83722 4.88744 4.91264 4.93368 4.95910 5.00737 5.05280 5.07516 5.09581 5.17226 5.22324 5.24067 5.27789 5.35849 5.45649 5.53925 5.56478 5.76370 5.91445 6.29917 6.82515 6.86559 7.18323 7.37864 8.13102 8.36681 9.30507 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020995 B = 0.002615 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.357827 B =10706.608527 C =11146.850285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.158 4.158 3 C -0.077 4.077 4 C -0.120 4.120 5 C 0.532 3.468 6 O -0.589 6.589 7 N -0.637 5.637 8 C 0.119 3.881 9 C -0.082 4.082 10 C -0.079 4.079 11 C 0.078 3.922 12 H 0.042 0.958 13 O -0.585 6.585 14 C 0.145 3.855 15 H 0.052 0.948 16 N -0.728 5.728 17 C -0.238 4.238 18 H 0.075 0.925 19 C -0.069 4.069 20 N -0.964 5.964 21 Si 0.963 3.037 22 H -0.282 1.282 23 H -0.300 1.300 24 H -0.279 1.279 25 C -0.106 4.106 26 C 0.149 3.851 27 H 0.056 0.944 28 C -0.087 4.087 29 C -0.152 4.152 30 C -0.129 4.129 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.125 0.875 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.059 0.941 42 H 0.382 0.618 43 H 0.376 0.624 44 H 0.250 0.750 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.095 0.905 48 H 0.046 0.954 49 H 0.069 0.931 50 H 0.059 0.941 51 H 0.045 0.955 52 H 0.068 0.932 53 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.077 -7.262 -7.771 22.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.176 4.176 3 C -0.115 4.115 4 C -0.159 4.159 5 C 0.324 3.676 6 O -0.469 6.469 7 N -0.370 5.370 8 C -0.003 4.003 9 C -0.084 4.084 10 C -0.117 4.117 11 C 0.017 3.983 12 H 0.060 0.940 13 O -0.392 6.392 14 C 0.036 3.964 15 H 0.070 0.930 16 N -0.368 5.368 17 C -0.370 4.370 18 H 0.093 0.907 19 C -0.262 4.262 20 N -0.615 5.615 21 Si 0.793 3.207 22 H -0.208 1.208 23 H -0.226 1.226 24 H -0.205 1.205 25 C -0.145 4.145 26 C 0.045 3.955 27 H 0.074 0.926 28 C -0.107 4.107 29 C -0.209 4.209 30 C -0.187 4.187 31 H 0.130 0.870 32 H 0.111 0.889 33 H 0.142 0.858 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.125 0.875 40 H 0.113 0.887 41 H 0.078 0.922 42 H 0.231 0.769 43 H 0.209 0.791 44 H 0.059 0.941 45 H 0.106 0.894 46 H 0.103 0.897 47 H 0.113 0.887 48 H 0.065 0.935 49 H 0.088 0.912 50 H 0.078 0.922 51 H 0.064 0.936 52 H 0.087 0.913 53 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -20.756 -6.953 -8.797 23.592 hybrid contribution 1.801 0.832 0.473 2.039 sum -18.956 -6.120 -8.325 21.589 Atomic orbital electron populations 1.24040 0.96005 1.02482 1.00505 1.22976 0.96204 0.97991 1.00424 1.20438 0.97536 0.95884 0.97608 1.21580 0.98762 0.93911 1.01670 1.20946 0.77544 0.89572 0.79520 1.90685 1.66551 1.50690 1.39014 1.49930 1.38692 1.21336 1.27084 1.23183 0.89645 0.99007 0.88420 1.21856 0.93621 0.96816 0.96059 1.21601 0.91072 1.00323 0.98706 1.23473 0.93052 0.94090 0.87713 0.94004 1.86316 1.39439 1.74247 1.39203 1.22017 0.89038 0.96799 0.88561 0.93035 1.42574 1.20254 1.50861 1.23087 1.19515 0.96663 1.16976 1.03826 0.90714 1.25428 1.01924 1.01621 0.97239 1.69777 1.37313 1.42974 1.11406 0.85366 0.80129 0.78707 0.76475 1.20789 1.22611 1.20520 1.22471 0.94384 1.01943 0.95680 1.22374 0.87163 0.89704 0.96243 0.92602 1.21256 0.95350 0.95234 0.98829 1.21952 0.99623 0.97591 1.01782 1.21626 0.96138 1.00767 1.00149 0.86983 0.88936 0.85750 0.92354 0.91853 0.86822 0.86943 0.87031 0.87468 0.88692 0.92210 0.76937 0.79149 0.94129 0.89399 0.89732 0.88716 0.93460 0.91176 0.92174 0.93584 0.91342 0.94673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.33 14.32 67.78 0.97 -1.36 16 2 C -0.16 -2.03 9.52 25.65 0.24 -1.78 16 3 C -0.08 -1.31 4.95 29.85 0.15 -1.16 16 4 C -0.12 -1.82 5.50 29.85 0.16 -1.65 16 5 C 0.53 12.68 7.48 87.66 0.66 13.33 16 6 O -0.59 -19.34 16.75 -3.03 -0.05 -19.40 16 7 N -0.64 -13.65 2.96 -833.93 -2.47 -16.12 16 8 C 0.12 1.86 7.41 83.65 0.62 2.48 16 9 C -0.08 -1.84 0.95 -52.44 -0.05 -1.89 16 10 C -0.08 -2.09 6.10 30.99 0.19 -1.90 16 11 C 0.08 2.63 4.01 31.46 0.13 2.76 16 12 H 0.04 1.57 8.04 -2.39 -0.02 1.55 16 13 O -0.59 -21.06 13.22 -148.98 -1.97 -23.03 16 14 C 0.15 5.11 2.99 46.19 0.14 5.25 16 15 H 0.05 1.98 6.38 -2.39 -0.02 1.96 16 16 N -0.73 -32.97 5.16 -317.28 -1.64 -34.61 16 17 C -0.24 -12.16 9.97 84.04 0.84 -11.32 16 18 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 19 C -0.07 -3.75 5.50 84.86 0.47 -3.29 16 20 N -0.96 -55.82 13.06 21.65 0.28 -55.53 16 21 Si 0.96 44.24 29.55 68.60 2.03 46.27 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 23 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 25 C -0.11 -2.78 5.06 31.53 0.16 -2.62 16 26 C 0.15 3.65 3.25 42.17 0.14 3.79 16 27 H 0.06 1.74 8.05 -2.39 -0.02 1.72 16 28 C -0.09 -1.92 2.05 -10.80 -0.02 -1.94 16 29 C -0.15 -3.66 8.71 71.98 0.63 -3.03 16 30 C -0.13 -2.92 8.82 71.98 0.64 -2.28 16 31 H 0.11 1.00 8.06 -2.91 -0.02 0.98 16 32 H 0.09 1.16 7.84 -2.91 -0.02 1.14 16 33 H 0.12 1.22 8.06 -2.91 -0.02 1.19 16 34 H 0.06 1.15 7.75 -2.39 -0.02 1.13 16 35 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 36 H 0.11 1.28 8.14 -2.39 -0.02 1.27 16 37 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.11 1.33 7.55 -2.39 -0.02 1.31 16 39 H 0.11 1.18 8.10 -2.38 -0.02 1.16 16 40 H 0.09 2.08 8.09 -2.39 -0.02 2.06 16 41 H 0.06 1.77 7.74 -2.39 -0.02 1.75 16 42 H 0.38 13.11 9.11 -74.06 -0.67 12.44 16 43 H 0.38 18.27 7.71 -92.71 -0.72 17.56 16 44 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 45 H 0.09 2.19 4.71 -2.39 -0.01 2.18 16 46 H 0.08 2.15 8.00 -2.39 -0.02 2.13 16 47 H 0.09 1.79 6.14 -2.39 -0.01 1.77 16 48 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 50 H 0.06 1.66 4.35 -2.39 -0.01 1.65 16 51 H 0.05 1.05 7.42 -2.39 -0.02 1.03 16 52 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 53 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -67.24 414.81 1.74 -65.50 By element: Atomic # 1 Polarization: 44.03 SS G_CDS: -0.49 Total: 43.54 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: 6.05 Total: -6.62 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -3.82 Total: -106.27 kcal Atomic # 8 Polarization: -40.40 SS G_CDS: -2.02 Total: -42.42 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -67.24 1.74 -65.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105605032.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.625 kcal (2) G-P(sol) polarization free energy of solvation -67.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds