Wall clock time and date at job start Tue Mar 31 2020 20:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50695 * 109.46961 * 2 1 4 4 C 1.32999 * 120.00084 * 94.99945 * 3 2 1 5 5 C 1.47102 * 119.99894 * 172.65293 * 4 3 2 6 6 O 1.21618 * 120.00152 * 2.78205 * 5 4 3 7 7 N 1.34773 * 120.00079 * 182.78040 * 5 4 3 8 8 C 1.46925 * 120.63337 * 174.73660 * 7 5 4 9 9 C 1.53190 * 108.77690 * 233.58526 * 8 7 5 10 10 C 1.53036 * 109.31239 * 305.36486 * 9 8 7 11 11 O 1.42902 * 109.45886 * 181.38379 * 10 9 8 12 12 C 1.42898 * 113.99842 * 149.97561 * 11 10 9 13 13 C 1.53497 * 114.20805 * 150.00324 * 12 11 10 14 14 N 1.47069 * 87.99002 * 87.51389 * 13 12 11 15 15 C 1.36932 * 136.06206 * 206.86534 * 14 13 12 16 16 H 1.08005 * 119.99950 * 359.97438 * 15 14 13 17 17 C 1.38805 * 120.00325 * 180.02562 * 15 14 13 18 18 N 1.31621 * 119.99899 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00295 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47472 * 89.99712 * 19 17 15 21 21 H 1.48499 * 109.47208 * 209.99984 * 19 17 15 22 22 H 1.48499 * 109.46864 * 329.99630 * 19 17 15 23 23 C 1.47074 * 87.88120 * 27.12379 * 14 13 12 24 24 C 1.53048 * 109.52867 * 61.37158 * 10 9 8 25 25 C 1.46930 * 120.62846 * 354.71408 * 7 5 4 26 26 C 1.50703 * 119.99805 * 274.99936 * 3 2 1 27 27 C 1.52996 * 109.46984 * 264.66770 * 26 3 2 28 28 H 1.08999 * 109.47364 * 60.00448 * 1 2 3 29 29 H 1.09007 * 109.47010 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47225 * 299.99976 * 1 2 3 31 31 H 1.08995 * 109.46677 * 239.99531 * 2 1 3 32 32 H 1.09002 * 109.47077 * 119.99975 * 2 1 3 33 33 H 1.08002 * 119.99801 * 352.65555 * 4 3 2 34 34 H 1.09002 * 109.58324 * 113.79620 * 8 7 5 35 35 H 1.09000 * 109.70415 * 353.44672 * 8 7 5 36 36 H 1.09000 * 109.49676 * 185.41132 * 9 8 7 37 37 H 1.08999 * 109.49461 * 65.31499 * 9 8 7 38 38 H 1.08997 * 109.46255 * 301.35581 * 10 9 8 39 39 H 1.09001 * 113.28856 * 16.93016 * 12 11 10 40 40 H 1.08999 * 113.46412 * 332.73568 * 13 12 11 41 41 H 1.09002 * 113.52411 * 202.30636 * 13 12 11 42 42 H 0.97004 * 120.00015 * 180.02562 * 18 17 15 43 43 H 1.09000 * 113.46755 * 87.66076 * 23 14 13 44 44 H 1.08993 * 113.46245 * 218.10139 * 23 14 13 45 45 H 1.09002 * 109.49585 * 58.58066 * 24 10 9 46 46 H 1.08996 * 109.49920 * 178.67546 * 24 10 9 47 47 H 1.08999 * 109.58577 * 246.20216 * 25 7 5 48 48 H 1.09002 * 109.58632 * 6.48101 * 25 7 5 49 49 H 1.09000 * 109.47052 * 24.67060 * 26 3 2 50 50 H 1.09000 * 109.46749 * 144.67183 * 26 3 2 51 51 H 1.09001 * 109.47091 * 179.97438 * 27 26 3 52 52 H 1.09000 * 109.47462 * 300.00038 * 27 26 3 53 53 H 1.09000 * 109.47040 * 60.00591 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3486 2.0143 1.1474 5 6 2.9893 3.3384 1.1384 6 8 3.1839 3.9127 0.0841 7 7 3.3608 3.9153 2.2984 8 6 4.1040 5.1826 2.3000 9 6 5.3779 5.0062 3.1325 10 6 5.0051 4.4944 4.5257 11 8 6.1883 4.3594 5.3155 12 6 5.9785 4.5568 6.7152 13 6 6.9348 3.7602 7.6135 14 7 7.8793 4.8833 7.5158 15 6 9.2373 5.0395 7.5970 16 1 9.8697 4.1826 7.7767 17 6 9.8011 6.2993 7.4495 18 7 9.0304 7.3437 7.2311 19 14 11.6535 6.5125 7.5611 20 1 12.2516 6.3594 6.2106 21 1 11.9651 7.8646 8.0901 22 1 12.2162 5.4830 8.4714 23 6 6.7229 5.7657 7.2988 24 6 4.3157 3.1335 4.4033 25 6 3.0297 3.2888 3.5856 26 6 2.1762 2.1691 -1.3002 27 6 3.6181 2.0529 -1.7985 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.1351 1.5241 2.0858 34 1 3.4871 5.9674 2.7378 35 1 4.3698 5.4541 1.2783 36 1 5.8898 5.9644 3.2217 37 1 6.0347 4.2863 2.6442 38 1 4.3284 5.2027 5.0037 39 1 4.9306 4.4896 7.0075 40 1 7.3014 2.8434 7.1519 41 1 6.5529 3.6007 8.6219 42 1 9.4244 8.2240 7.1276 43 1 6.2839 6.1411 8.2232 44 1 6.9094 6.5540 6.5696 45 1 4.9827 2.4315 3.9030 46 1 4.0715 2.7587 5.3973 47 1 2.3252 3.9192 4.1282 48 1 2.5843 2.3093 3.4114 49 1 1.5001 1.7429 -2.0414 50 1 1.9292 3.2192 -1.1442 51 1 3.7221 2.5937 -2.7392 52 1 4.2942 2.4790 -1.0573 53 1 3.8651 1.0028 -1.9545 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105701851.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:49 Heat of formation + Delta-G solvation = -24.729318 kcal Electronic energy + Delta-G solvation = -29764.749926 eV Core-core repulsion = 25831.171375 eV Total energy + Delta-G solvation = -3933.578551 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.40810 -40.36569 -38.93758 -37.39198 -36.54349 -34.17976 -33.06782 -32.78959 -32.06856 -30.63448 -29.53119 -26.50383 -26.31382 -25.23263 -24.94993 -24.15300 -24.06923 -22.18045 -21.17457 -20.49148 -18.95853 -18.85668 -18.46602 -17.48403 -16.96396 -16.72527 -16.32340 -16.14455 -15.87514 -15.60751 -15.34440 -15.21261 -15.04757 -14.86345 -14.60974 -14.38996 -14.25121 -14.14234 -13.62901 -13.46938 -13.39327 -13.22539 -13.16055 -12.93088 -12.83431 -12.74846 -12.56811 -12.49139 -12.25162 -12.22156 -12.11186 -11.88073 -11.68866 -11.63386 -11.54668 -11.45777 -11.15466 -10.92231 -10.40591 -10.13954 -10.09131 -9.55730 -8.89868 -7.89594 -5.21495 0.42786 1.42244 1.45712 1.53547 2.04034 2.30611 2.47080 2.70549 3.32444 3.50886 3.55808 3.67750 3.79306 3.83892 3.92997 4.03788 4.10430 4.18878 4.27509 4.30418 4.32446 4.43150 4.43469 4.45307 4.57210 4.60350 4.64189 4.72138 4.78599 4.79493 4.82648 4.85790 4.86520 4.94128 4.98256 5.01360 5.05986 5.13191 5.14981 5.19164 5.25141 5.28750 5.36116 5.36660 5.41010 5.52195 5.55346 5.60628 5.72054 5.96255 6.49225 6.61617 6.92091 7.25093 7.61415 8.62827 9.28181 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020556 B = 0.002152 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.835049 B =13005.965941 C =13482.208783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.017 4.017 4 C -0.243 4.243 5 C 0.537 3.463 6 O -0.571 6.571 7 N -0.612 5.612 8 C 0.126 3.874 9 C -0.125 4.125 10 C 0.084 3.916 11 O -0.374 6.374 12 C 0.064 3.936 13 C 0.113 3.887 14 N -0.640 5.640 15 C -0.223 4.223 16 H 0.082 0.918 17 C -0.073 4.073 18 N -0.954 5.954 19 Si 0.979 3.021 20 H -0.289 1.289 21 H -0.292 1.292 22 H -0.266 1.266 23 C 0.128 3.872 24 C -0.147 4.147 25 C 0.111 3.889 26 C -0.102 4.102 27 C -0.129 4.129 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.154 0.846 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.114 0.886 40 H 0.046 0.954 41 H 0.070 0.930 42 H 0.246 0.754 43 H 0.033 0.967 44 H 0.034 0.966 45 H 0.059 0.941 46 H 0.098 0.902 47 H 0.091 0.909 48 H 0.115 0.885 49 H 0.075 0.925 50 H 0.078 0.922 51 H 0.053 0.947 52 H 0.038 0.962 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.733 -15.347 -12.733 30.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.132 4.132 3 C -0.019 4.019 4 C -0.263 4.263 5 C 0.331 3.669 6 O -0.453 6.453 7 N -0.344 5.344 8 C 0.003 3.997 9 C -0.164 4.164 10 C 0.026 3.974 11 O -0.293 6.293 12 C 0.006 3.994 13 C -0.012 4.012 14 N -0.367 5.367 15 C -0.352 4.352 16 H 0.099 0.901 17 C -0.266 4.266 18 N -0.604 5.604 19 Si 0.807 3.193 20 H -0.216 1.216 21 H -0.219 1.219 22 H -0.191 1.191 23 C 0.002 3.998 24 C -0.185 4.185 25 C -0.011 4.011 26 C -0.139 4.139 27 C -0.186 4.186 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.171 0.829 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.131 0.869 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.078 0.922 46 H 0.116 0.884 47 H 0.109 0.891 48 H 0.133 0.867 49 H 0.094 0.906 50 H 0.097 0.903 51 H 0.072 0.928 52 H 0.057 0.943 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.131 -14.933 -13.330 29.841 hybrid contribution 1.451 0.958 0.407 1.786 sum -20.680 -13.975 -12.923 28.106 Atomic orbital electron populations 1.21717 0.93355 1.02887 1.02283 1.20827 0.97230 0.90823 1.04338 1.22823 0.88817 0.95775 0.94441 1.22553 1.08038 0.95492 1.00266 1.19085 0.78595 0.86538 0.82712 1.90712 1.57333 1.66224 1.31081 1.48159 1.55716 1.23657 1.06864 1.21403 0.91477 0.85971 1.00852 1.21891 0.97943 1.01671 0.94890 1.22284 0.86843 0.97205 0.91065 1.88020 1.33238 1.90933 1.17061 1.23615 0.97894 0.96559 0.81366 1.22885 0.88978 0.92312 0.97072 1.45794 1.00573 1.06226 1.84104 1.19292 0.81273 0.93713 1.40894 0.90054 1.25649 1.02473 0.95259 1.03193 1.70029 1.34892 0.98539 1.56904 0.85061 0.79591 0.76950 0.77654 1.21570 1.21859 1.19105 1.22653 0.86060 0.94682 0.96450 1.22399 0.97123 0.96934 1.02089 1.22004 0.96196 1.00574 0.82318 1.20898 0.97700 1.01062 0.94191 1.21503 0.95906 1.00849 1.00377 0.92702 0.90797 0.92369 0.89650 0.89494 0.82890 0.89804 0.90073 0.91509 0.92901 0.90763 0.86888 0.93517 0.91207 0.94473 0.94949 0.94725 0.92202 0.88388 0.89113 0.86679 0.90614 0.90334 0.92819 0.94326 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.89 71.98 0.71 -0.37 16 2 C -0.10 -0.88 6.08 29.85 0.18 -0.69 16 3 C -0.02 -0.25 4.62 -17.62 -0.08 -0.33 16 4 C -0.24 -4.01 8.93 23.43 0.21 -3.80 16 5 C 0.54 12.44 7.39 86.57 0.64 13.08 16 6 O -0.57 -16.67 10.68 -4.09 -0.04 -16.71 16 7 N -0.61 -12.82 2.97 -823.17 -2.45 -15.27 16 8 C 0.13 2.97 6.41 86.36 0.55 3.52 16 9 C -0.13 -3.56 5.73 30.67 0.18 -3.38 16 10 C 0.08 2.26 2.46 30.62 0.08 2.33 16 11 O -0.37 -14.24 10.04 -148.98 -1.50 -15.73 16 12 C 0.06 2.34 4.50 30.93 0.14 2.48 16 13 C 0.11 4.55 8.52 83.18 0.71 5.26 16 14 N -0.64 -34.53 3.78 -738.97 -2.80 -37.33 16 15 C -0.22 -13.25 10.74 84.03 0.90 -12.34 16 16 H 0.08 4.62 7.83 -2.91 -0.02 4.59 16 17 C -0.07 -4.40 5.50 84.86 0.47 -3.93 16 18 N -0.95 -60.35 11.51 21.65 0.25 -60.10 16 19 Si 0.98 47.92 29.55 68.60 2.03 49.95 16 20 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 21 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 23 C 0.13 6.20 7.24 83.18 0.60 6.80 16 24 C -0.15 -2.87 5.69 30.67 0.17 -2.69 16 25 C 0.11 1.61 6.35 86.36 0.55 2.16 16 26 C -0.10 -1.85 5.35 29.85 0.16 -1.69 16 27 C -0.13 -2.60 9.34 71.98 0.67 -1.92 16 28 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16 30 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.09 0.64 8.04 -2.39 -0.02 0.62 16 33 H 0.15 1.62 5.85 -2.91 -0.02 1.61 16 34 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.08 2.16 7.04 -2.39 -0.02 2.14 16 36 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.07 1.79 7.71 -2.39 -0.02 1.77 16 39 H 0.11 2.97 7.76 -2.39 -0.02 2.95 16 40 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 43 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.03 1.95 7.12 -2.39 -0.02 1.93 16 45 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.12 1.10 5.30 -2.39 -0.01 1.08 16 49 H 0.08 1.08 8.09 -2.39 -0.02 1.06 16 50 H 0.08 1.86 5.85 -2.39 -0.01 1.85 16 51 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 52 H 0.04 0.99 6.38 -2.39 -0.02 0.97 16 53 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -78.31 412.03 3.21 -75.10 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.87 Total: 15.62 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 6.84 Total: 4.47 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -4.99 Total: -112.70 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -1.54 Total: -32.45 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.03 Total: 49.95 kcal Total: -78.31 3.21 -75.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105701851.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.371 kcal (2) G-P(sol) polarization free energy of solvation -78.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds